Wall clock time and date at job start Tue Mar 31 2020 06:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00282 * 2 1 4 4 H 1.48499 * 109.47460 * 269.99847 * 3 2 1 5 5 H 1.48500 * 109.47139 * 30.00065 * 3 2 1 6 6 H 1.48509 * 109.46975 * 150.00219 * 3 2 1 7 7 C 1.38817 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00251 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00249 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.46862 * 325.00037 * 10 9 7 12 12 C 1.52999 * 109.47081 * 205.00064 * 10 9 7 13 13 N 1.46492 * 109.47242 * 54.99909 * 12 10 9 14 14 C 1.34787 * 119.99934 * 179.97438 * 13 12 10 15 15 O 1.21560 * 119.99961 * 0.02562 * 14 13 12 16 16 C 1.47749 * 119.99691 * 179.97438 * 14 13 12 17 17 C 1.39359 * 124.11183 * 180.02562 * 16 14 13 18 18 N 1.30089 * 112.14021 * 180.27066 * 17 16 14 19 19 S 1.55918 * 108.75977 * 359.59727 * 18 17 16 20 20 N 1.31482 * 124.12192 * 0.02562 * 16 14 13 21 21 C 1.52998 * 109.47040 * 84.99989 * 10 9 7 22 22 C 1.52999 * 117.49923 * 8.74613 * 21 10 9 23 23 C 1.53003 * 117.49998 * 300.08568 * 21 10 9 24 24 H 0.96993 * 119.99401 * 359.97438 * 1 2 3 25 25 H 0.97006 * 120.00163 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47122 * 294.99273 * 12 10 9 27 27 H 1.09004 * 109.46721 * 175.00127 * 12 10 9 28 28 H 0.97000 * 120.00463 * 0.02562 * 13 12 10 29 29 H 1.08002 * 123.92565 * 359.97438 * 17 16 14 30 30 H 1.09000 * 115.55160 * 154.42271 * 21 10 9 31 31 H 1.08992 * 117.49785 * 0.02562 * 22 21 10 32 32 H 1.09002 * 117.49956 * 145.02503 * 22 21 10 33 33 H 1.08998 * 117.50368 * 214.98612 * 23 21 10 34 34 H 1.09004 * 117.49464 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4711 0.0000 11 1 3.5644 -3.2067 0.5891 12 6 5.4990 -2.2592 0.6102 13 7 5.3610 -1.6644 1.9418 14 6 6.4587 -1.3874 2.6733 15 8 7.5632 -1.6308 2.2278 16 6 6.3195 -0.7870 4.0161 17 6 7.3936 -0.4658 4.8438 18 7 7.0050 0.0453 5.9752 19 16 5.4477 0.1205 5.9829 20 7 5.1671 -0.4907 4.5756 21 6 4.2587 -2.9753 -1.4371 22 6 3.8386 -2.0294 -2.5639 23 6 2.9755 -3.2473 -2.2247 24 1 -0.4849 0.8400 0.0004 25 1 3.8647 -0.3623 0.0004 26 1 6.0785 -1.5918 -0.0276 27 1 6.0103 -3.2184 0.6919 28 1 4.4796 -1.4706 2.2975 29 1 8.4281 -0.6272 4.5788 30 1 5.1104 -3.6302 -1.6209 31 1 3.4581 -1.0479 -2.2815 32 1 4.4137 -2.0623 -3.4893 33 1 2.9831 -4.0809 -2.9270 34 1 2.0268 -3.0675 -1.7189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690142846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:49 Heat of formation + Delta-G solvation = 46.687388 kcal Electronic energy + Delta-G solvation = -19752.199823 eV Core-core repulsion = 16619.936564 eV Total energy + Delta-G solvation = -3132.263259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.16517 -40.30907 -39.14643 -36.05709 -35.19113 -34.59971 -32.96503 -30.43864 -28.44498 -25.59072 -24.60548 -23.38520 -22.86705 -21.51120 -20.75564 -20.38289 -19.74567 -18.66657 -17.26068 -17.04784 -16.81937 -16.47186 -16.29515 -15.87390 -15.65328 -15.04044 -14.62598 -14.52608 -14.26484 -13.28887 -13.15261 -12.97315 -12.65288 -12.55424 -12.47476 -12.28577 -12.13900 -12.09631 -12.04551 -11.63919 -11.30875 -11.08126 -10.87026 -10.64231 -10.34264 -10.04815 -9.32355 -7.97460 -5.29658 -0.65888 0.34954 0.45728 0.61234 1.36879 1.37855 1.44177 1.99091 2.05771 2.48936 3.09488 3.34867 3.40894 3.61020 3.72349 3.86878 4.06219 4.25487 4.32321 4.46824 4.47690 4.54883 4.64786 4.85526 4.99317 5.15526 5.18497 5.29220 5.40259 5.52409 5.63804 5.87548 6.25323 6.39285 6.96966 7.11353 7.85601 8.03590 9.23828 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.005706 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.096608 B = 4905.520537 C = 6113.518199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.054 4.054 3 Si 0.938 3.062 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.258 1.258 7 C -0.203 4.203 8 H 0.066 0.934 9 N -0.741 5.741 10 C 0.194 3.806 11 H 0.061 0.939 12 C 0.123 3.877 13 N -0.699 5.699 14 C 0.601 3.399 15 O -0.552 6.552 16 C -0.006 4.006 17 C 0.092 3.908 18 N -0.594 5.594 19 S 0.784 5.216 20 N -0.571 5.571 21 C -0.161 4.161 22 C -0.171 4.171 23 C -0.177 4.177 24 H 0.254 0.746 25 H 0.363 0.637 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.414 0.586 29 H 0.231 0.769 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.459 -2.854 8.416 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.246 4.246 3 Si 0.767 3.233 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.183 1.183 7 C -0.334 4.334 8 H 0.084 0.916 9 N -0.384 5.384 10 C 0.086 3.914 11 H 0.079 0.921 12 C -0.001 4.001 13 N -0.349 5.349 14 C 0.382 3.618 15 O -0.431 6.431 16 C -0.180 4.180 17 C -0.100 4.100 18 N -0.436 5.436 19 S 0.826 5.174 20 N -0.423 5.423 21 C -0.182 4.182 22 C -0.208 4.208 23 C -0.214 4.214 24 H 0.063 0.937 25 H 0.197 0.803 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.251 0.749 29 H 0.247 0.753 30 H 0.145 0.855 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.726 -2.415 9.584 16.914 hybrid contribution 0.463 0.790 -1.283 1.576 sum 14.189 -1.625 8.300 16.519 Atomic orbital electron populations 1.69844 1.06857 1.26087 1.60433 1.25230 0.95674 1.00132 1.03564 0.85674 0.78599 0.81431 0.77547 1.21299 1.23104 1.18322 1.18888 0.82000 0.93098 1.39453 0.91609 1.42789 1.02630 1.03355 1.89612 1.20142 0.90267 0.87713 0.93301 0.92096 1.21707 0.97202 0.99484 0.81700 1.45923 1.09521 1.61539 1.17907 1.16906 0.84484 0.77998 0.82397 1.90782 1.25851 1.54947 1.71483 1.22434 0.87876 1.07866 0.99791 1.23914 1.03465 0.96102 0.86537 1.72217 1.20341 1.24241 1.26776 1.78858 0.94303 1.37844 1.06443 1.72351 1.33168 1.19653 1.17121 1.22993 0.98775 1.03184 0.93275 1.22799 1.03775 0.95502 0.98755 1.22822 0.95205 0.99776 1.03609 0.93721 0.80341 0.91061 0.88608 0.74930 0.75263 0.85530 0.90610 0.88323 0.88075 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.56 13.97 21.65 0.30 -60.26 16 2 C -0.05 -3.04 5.50 84.86 0.47 -2.57 16 3 Si 0.94 44.51 27.74 68.60 1.90 46.41 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.26 -11.24 6.52 99.48 0.65 -10.59 16 7 C -0.20 -10.45 8.64 84.04 0.73 -9.73 16 8 H 0.07 3.74 7.14 -2.91 -0.02 3.72 16 9 N -0.74 -30.55 2.88 -322.95 -0.93 -31.48 16 10 C 0.19 6.39 2.86 44.99 0.13 6.52 16 11 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 12 C 0.12 3.46 5.21 86.38 0.45 3.91 16 13 N -0.70 -21.16 5.38 -466.07 -2.51 -23.67 16 14 C 0.60 17.84 7.82 86.76 0.68 18.52 16 15 O -0.55 -17.79 16.80 -3.91 -0.07 -17.86 16 16 C -0.01 -0.16 6.81 41.98 0.29 0.12 16 17 C 0.09 2.00 11.22 85.22 0.96 2.95 16 18 N -0.59 -12.49 11.41 -92.44 -1.05 -13.55 16 19 S 0.78 14.82 23.69 -56.49 -1.34 13.48 16 20 N -0.57 -15.00 11.00 -80.59 -0.89 -15.89 16 21 C -0.16 -4.82 5.70 -10.79 -0.06 -4.88 16 22 C -0.17 -5.71 9.74 30.62 0.30 -5.41 16 23 C -0.18 -5.95 9.87 30.62 0.30 -5.65 16 24 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.36 15.16 5.66 -92.70 -0.52 14.64 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.41 13.64 7.73 -92.71 -0.72 12.92 16 29 H 0.23 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.13 2.96 8.11 -2.39 -0.02 2.94 16 31 H 0.08 3.08 6.68 -2.39 -0.02 3.07 16 32 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.10 2.83 8.14 -2.39 -0.02 2.82 16 34 H 0.07 2.93 6.22 -2.38 -0.01 2.91 16 Total: -1.00 -65.68 305.55 -0.49 -66.17 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.14 Total: 32.84 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.23 Total: 3.79 kcal Atomic # 7 Polarization: -139.76 SS G_CDS: -5.08 Total: -144.84 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.07 Total: -17.86 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.41 kcal Atomic # 16 Polarization: 14.82 SS G_CDS: -1.34 Total: 13.48 kcal Total: -65.68 -0.49 -66.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690142846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.862 kcal (2) G-P(sol) polarization free energy of solvation -65.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds