Wall clock time and date at job start Tue Mar 31 2020 06:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48500 * 109.47081 * 269.99760 * 3 2 1 5 5 H 1.48502 * 109.46987 * 29.99781 * 3 2 1 6 6 H 1.48501 * 109.47264 * 149.99904 * 3 2 1 7 7 C 1.38814 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99628 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00318 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99920 * 180.02562 * 9 7 2 11 11 H 1.08988 * 109.47344 * 34.99975 * 10 9 7 12 12 C 1.53004 * 109.46895 * 154.99899 * 10 9 7 13 13 N 1.46504 * 109.46928 * 304.99492 * 12 10 9 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21573 * 119.99941 * 0.02562 * 14 13 12 16 16 C 1.47756 * 120.00007 * 180.27931 * 14 13 12 17 17 C 1.39348 * 124.11442 * 179.45385 * 16 14 13 18 18 N 1.30093 * 112.14298 * 179.77897 * 17 16 14 19 19 S 1.55924 * 108.75520 * 0.46219 * 18 17 16 20 20 N 1.31481 * 124.11320 * 359.74924 * 16 14 13 21 21 C 1.52994 * 109.46863 * 274.99242 * 10 9 7 22 22 C 1.53005 * 117.49406 * 128.74931 * 21 10 9 23 23 C 1.53001 * 117.49807 * 60.09473 * 21 10 9 24 24 H 0.96998 * 120.00254 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00037 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47202 * 184.99750 * 12 10 9 27 27 H 1.08997 * 109.47419 * 64.99648 * 12 10 9 28 28 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 29 29 H 1.08002 * 123.92866 * 0.02562 * 17 16 14 30 30 H 1.09001 * 115.55569 * 274.41786 * 21 10 9 31 31 H 1.09001 * 117.50171 * 0.02562 * 22 21 10 32 32 H 1.09005 * 117.49638 * 145.02634 * 22 21 10 33 33 H 1.08998 * 117.50094 * 214.97869 * 23 21 10 34 34 H 1.09001 * 117.49735 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5650 -3.2063 -0.5887 12 6 5.4995 -2.2588 -0.6080 13 7 5.3624 -1.6635 -1.9396 14 6 6.4606 -1.3852 -2.6697 15 8 7.5650 -1.6286 -2.2234 16 6 6.3226 -0.7791 -4.0101 17 6 7.3977 -0.4466 -4.8319 18 7 7.0102 0.0684 -5.9620 19 16 5.4524 0.1353 -5.9744 20 7 5.1706 -0.4827 -4.5703 21 6 4.2578 -2.9756 1.4380 22 6 3.8337 -4.4171 1.7268 23 6 2.9740 -3.2520 2.2232 24 1 -0.4850 0.8400 -0.0004 25 1 3.8646 -0.3621 0.0007 26 1 6.0110 -3.2178 -0.6897 27 1 6.0785 -1.5915 0.0304 28 1 4.4813 -1.4689 -2.2956 29 1 8.4322 -0.6023 -4.5637 30 1 5.1108 -2.5817 1.9905 31 1 3.4514 -5.0059 0.8930 32 1 4.4075 -4.9713 2.4697 33 1 2.9825 -3.0401 3.2924 34 1 2.0257 -3.0738 1.7162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690142847.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:54 Heat of formation + Delta-G solvation = 65.196410 kcal Electronic energy + Delta-G solvation = -19623.426077 eV Core-core repulsion = 16491.965429 eV Total energy + Delta-G solvation = -3131.460648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16844 -39.08645 -37.62579 -34.90531 -33.86297 -33.32010 -31.23666 -28.85813 -27.31769 -24.18079 -22.85716 -21.92380 -21.69290 -20.40129 -19.73474 -19.45938 -18.11188 -17.22101 -16.19551 -15.81691 -15.42308 -15.33785 -14.82166 -14.30244 -14.18490 -13.79730 -13.22769 -12.85535 -12.50579 -12.35757 -11.57892 -11.53028 -11.46482 -11.29792 -11.14957 -10.96588 -10.90791 -10.76883 -10.29463 -10.14086 -9.74930 -9.56181 -9.41985 -9.37319 -9.03828 -8.88602 -7.38368 -5.83877 -3.20198 0.31878 1.27038 1.43975 1.48976 3.12072 3.19435 3.32898 3.36441 3.41393 4.35843 4.39487 4.52952 4.82202 5.00850 5.05165 5.29008 5.30732 5.39193 5.54265 5.62103 5.70831 5.85325 5.92939 6.10379 6.13396 6.26199 6.39484 6.54013 6.64738 6.70481 6.97209 7.62811 7.89574 8.18392 8.33851 9.11053 9.83904 10.02560 11.33797 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.005779 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.802348 B = 4844.109234 C = 6207.707719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.093 0.907 9 N -0.742 5.742 10 C 0.198 3.802 11 H 0.065 0.935 12 C 0.114 3.886 13 N -0.693 5.693 14 C 0.599 3.401 15 O -0.535 6.535 16 C 0.013 3.987 17 C 0.088 3.912 18 N -0.583 5.583 19 S 0.716 5.284 20 N -0.536 5.536 21 C -0.164 4.164 22 C -0.193 4.193 23 C -0.154 4.154 24 H 0.260 0.740 25 H 0.362 0.638 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.420 0.580 29 H 0.214 0.786 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.989 -3.180 -8.106 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.088 3.912 11 H 0.083 0.917 12 C -0.010 4.010 13 N -0.344 5.344 14 C 0.379 3.621 15 O -0.412 6.412 16 C -0.162 4.162 17 C -0.106 4.106 18 N -0.423 5.423 19 S 0.757 5.243 20 N -0.386 5.386 21 C -0.186 4.186 22 C -0.231 4.231 23 C -0.191 4.191 24 H 0.070 0.930 25 H 0.195 0.805 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.258 0.742 29 H 0.230 0.770 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.179 -2.692 -9.279 14.775 hybrid contribution 1.267 0.842 1.298 2.000 sum 12.446 -1.850 -7.981 14.900 Atomic orbital electron populations 1.69684 1.05051 1.25849 1.57161 1.24622 0.95115 0.96999 1.01848 0.86648 0.79304 0.85369 0.77769 1.21132 1.21819 1.20382 1.18990 0.80249 0.94554 1.43278 0.88953 1.42832 1.04167 1.01638 1.89797 1.20027 0.89584 0.89817 0.91770 0.91671 1.21792 0.98831 0.98381 0.82006 1.45887 1.09650 1.61205 1.17707 1.16755 0.84987 0.78494 0.81877 1.90805 1.25507 1.54191 1.70696 1.22613 0.87232 1.06329 1.00061 1.23760 1.03086 0.96678 0.87121 1.72254 1.19438 1.23990 1.26648 1.79133 0.95434 1.40469 1.09234 1.72540 1.32336 1.18604 1.15092 1.22937 0.99189 0.97131 0.99313 1.22960 1.05428 0.91276 1.03423 1.22851 0.96778 1.00354 0.99118 0.93024 0.80497 0.90620 0.91272 0.74227 0.77004 0.89059 0.89381 0.90003 0.90171 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.92 13.97 55.49 0.78 -27.15 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -6.19 9.11 -15.06 -0.14 -6.33 16 8 H 0.09 2.54 7.14 -52.48 -0.37 2.17 16 9 N -0.74 -15.88 4.34 -53.43 -0.23 -16.11 16 10 C 0.20 3.44 2.70 -67.93 -0.18 3.26 16 11 H 0.07 1.17 7.84 -51.94 -0.41 0.76 16 12 C 0.11 1.75 5.21 -4.04 -0.02 1.73 16 13 N -0.69 -11.01 5.39 -61.27 -0.33 -11.34 16 14 C 0.60 9.33 7.82 -12.37 -0.10 9.24 16 15 O -0.54 -9.09 16.81 5.30 0.09 -9.01 16 16 C 0.01 0.18 6.81 -83.71 -0.57 -0.39 16 17 C 0.09 1.04 11.22 -17.88 -0.20 0.84 16 18 N -0.58 -6.80 11.41 19.43 0.22 -6.58 16 19 S 0.72 7.56 23.69 -107.50 -2.55 5.02 16 20 N -0.54 -7.46 11.00 23.17 0.25 -7.20 16 21 C -0.16 -2.67 5.36 -90.62 -0.49 -3.16 16 22 C -0.19 -2.80 10.18 -26.69 -0.27 -3.08 16 23 C -0.15 -2.67 9.78 -26.69 -0.26 -2.93 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.36 7.94 5.66 -40.82 -0.23 7.71 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.42 7.10 7.72 -40.82 -0.32 6.78 16 29 H 0.21 2.04 8.06 -52.49 -0.42 1.61 16 30 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 31 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.11 2.26 6.23 -51.93 -0.32 1.94 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -30.50 308.46 -7.93 -38.43 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -3.77 Total: 13.15 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.32 Total: -0.63 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: 0.69 Total: -68.39 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Atomic # 16 Polarization: 7.56 SS G_CDS: -2.55 Total: 5.02 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.50 -7.93 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690142847.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.629 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds