Wall clock time and date at job start Tue Mar 31 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47156 * 269.99905 * 3 2 1 5 5 H 1.48500 * 109.47149 * 29.99876 * 3 2 1 6 6 H 1.48503 * 109.47161 * 150.00171 * 3 2 1 7 7 C 1.38813 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00268 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99657 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99629 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47560 * 325.00053 * 10 9 7 12 12 C 1.53005 * 109.47091 * 204.99857 * 10 9 7 13 13 N 1.46505 * 109.46904 * 55.00222 * 12 10 9 14 14 C 1.34777 * 119.99724 * 180.02562 * 13 12 10 15 15 O 1.21603 * 120.00258 * 359.97438 * 14 13 12 16 16 C 1.47445 * 119.99414 * 179.72682 * 14 13 12 17 17 C 1.37985 * 124.14999 * 180.27464 * 16 14 13 18 18 S 1.72103 * 104.03214 * 179.97438 * 17 16 14 19 19 N 1.56401 * 96.15513 * 359.97438 * 18 17 16 20 20 N 1.27414 * 109.87651 * 359.75198 * 19 18 17 21 21 C 1.53005 * 109.46958 * 85.00491 * 10 9 7 22 22 C 1.52997 * 117.49816 * 8.74144 * 21 10 9 23 23 C 1.52998 * 117.49351 * 300.08171 * 21 10 9 24 24 H 0.96999 * 119.99821 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00634 * 0.02562 * 9 7 2 26 26 H 1.09003 * 109.47270 * 295.00782 * 12 10 9 27 27 H 1.08993 * 109.47355 * 175.00325 * 12 10 9 28 28 H 0.97000 * 119.99792 * 359.97438 * 13 12 10 29 29 H 1.07995 * 127.98642 * 359.95210 * 17 16 14 30 30 H 1.08993 * 115.55057 * 154.41708 * 21 10 9 31 31 H 1.09001 * 117.50087 * 0.02562 * 22 21 10 32 32 H 1.09002 * 117.49418 * 145.02431 * 22 21 10 33 33 H 1.08998 * 117.49733 * 214.98169 * 23 21 10 34 34 H 1.09002 * 117.50504 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0022 11 1 3.5644 -3.2062 0.5919 12 6 5.4990 -2.2587 0.6122 13 7 5.3610 -1.6627 1.9434 14 6 6.4587 -1.3841 2.6741 15 8 7.5636 -1.6279 2.2287 16 6 6.3199 -0.7787 4.0114 17 6 7.3831 -0.4538 4.8287 18 16 6.6421 0.2068 6.2346 19 7 5.1675 0.0436 5.7393 20 7 5.1564 -0.4730 4.5746 21 6 4.2587 -2.9764 -1.4345 22 6 3.8386 -2.0316 -2.5621 23 6 2.9755 -3.2492 -2.2218 24 1 -0.4850 0.8400 -0.0004 25 1 3.8646 -0.3622 0.0014 26 1 6.0785 -1.5916 -0.0261 27 1 6.0104 -3.2176 0.6947 28 1 4.4796 -1.4679 2.2985 29 1 8.4369 -0.5843 4.6319 30 1 5.1104 -3.6314 -1.6177 31 1 3.4581 -1.0497 -2.2806 32 1 4.4138 -2.0653 -3.4874 33 1 2.9832 -4.0833 -2.9234 34 1 2.0268 -3.0689 -1.7163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752472816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:12 Heat of formation + Delta-G solvation = 81.596075 kcal Electronic energy + Delta-G solvation = -19736.771987 eV Core-core repulsion = 16606.022482 eV Total energy + Delta-G solvation = -3130.749505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15550 -39.24196 -37.73905 -34.71683 -33.30995 -32.31490 -31.13382 -28.83823 -27.12908 -24.52155 -23.02323 -22.19962 -21.49142 -20.80966 -19.63942 -18.93092 -17.66553 -16.79670 -16.16212 -15.95262 -15.45659 -15.27277 -14.82724 -14.41980 -14.20060 -13.53233 -13.24155 -12.80201 -12.72937 -12.50683 -12.24052 -11.63441 -11.22987 -10.96750 -10.80895 -10.59666 -10.48817 -10.24099 -10.22715 -10.19908 -10.08313 -9.56025 -9.55249 -9.24015 -9.01551 -8.89243 -7.36670 -5.81418 -3.18484 -0.10779 0.74370 1.37513 1.37820 3.13758 3.21933 3.35223 3.38589 3.44414 3.77020 4.51499 4.54878 4.55475 4.80822 5.17875 5.19183 5.28820 5.44911 5.66310 5.73209 5.81707 5.90985 5.93724 6.24030 6.37012 6.48617 6.58878 6.70307 7.00491 7.13699 7.30879 7.69139 7.93461 8.18898 8.36686 9.13738 9.86116 10.04308 11.36246 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.005516 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.049769 B = 5074.475664 C = 6264.698606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.094 0.906 9 N -0.743 5.743 10 C 0.197 3.803 11 H 0.068 0.932 12 C 0.114 3.886 13 N -0.693 5.693 14 C 0.599 3.401 15 O -0.538 6.538 16 C -0.018 4.018 17 C -0.238 4.238 18 S 0.445 5.555 19 N -0.284 5.284 20 N -0.201 5.201 21 C -0.178 4.178 22 C -0.165 4.165 23 C -0.169 4.169 24 H 0.260 0.740 25 H 0.363 0.637 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.421 0.579 29 H 0.208 0.792 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.698 -2.293 8.844 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.184 4.184 3 Si 0.708 3.292 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.112 0.888 9 N -0.386 5.386 10 C 0.087 3.913 11 H 0.086 0.914 12 C -0.010 4.010 13 N -0.344 5.344 14 C 0.379 3.621 15 O -0.415 6.415 16 C -0.166 4.166 17 C -0.395 4.395 18 S 0.581 5.419 19 N -0.264 5.264 20 N -0.071 5.071 21 C -0.200 4.200 22 C -0.202 4.202 23 C -0.206 4.206 24 H 0.070 0.930 25 H 0.196 0.804 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.259 0.741 29 H 0.225 0.775 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.947 -1.888 9.836 17.992 hybrid contribution 0.926 0.799 -1.210 1.720 sum 15.873 -1.090 8.626 18.098 Atomic orbital electron populations 1.69680 1.05070 1.25849 1.56943 1.24618 0.95095 0.96940 1.01745 0.86670 0.79351 0.85497 0.77697 1.21160 1.21821 1.20345 1.18988 0.80193 0.94603 1.43583 0.88843 1.42843 1.04219 1.01705 1.89806 1.19972 0.89421 0.89695 0.92231 0.91423 1.21782 0.98993 0.98278 0.81955 1.45925 1.09677 1.61024 1.17759 1.16650 0.85051 0.78509 0.81864 1.90807 1.25524 1.54364 1.70798 1.22795 0.87791 1.06064 0.99917 1.28843 1.06980 1.04370 0.99357 1.81471 0.98742 1.43563 1.18134 1.78761 1.17735 1.20297 1.09607 1.71603 1.24384 1.09641 1.01504 1.22992 0.98422 1.03680 0.94890 1.22848 1.03211 0.97223 0.96953 1.22901 0.96440 0.98634 1.02635 0.93010 0.80368 0.91186 0.90844 0.74105 0.77534 0.89266 0.87193 0.91064 0.90835 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.97 55.49 0.78 -27.36 16 2 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 3 Si 0.88 21.70 27.74 -169.99 -4.71 16.98 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 7 C -0.24 -6.28 8.64 -15.06 -0.13 -6.41 16 8 H 0.09 2.60 7.14 -52.49 -0.37 2.22 16 9 N -0.74 -15.84 2.88 -53.42 -0.15 -16.00 16 10 C 0.20 3.46 2.86 -67.92 -0.19 3.27 16 11 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 12 C 0.11 1.79 5.22 -4.04 -0.02 1.76 16 13 N -0.69 -11.37 5.39 -61.37 -0.33 -11.70 16 14 C 0.60 9.64 7.81 -12.51 -0.10 9.54 16 15 O -0.54 -9.41 16.80 5.27 0.09 -9.32 16 16 C -0.02 -0.26 6.87 -83.78 -0.58 -0.84 16 17 C -0.24 -2.44 11.21 30.64 0.34 -2.10 16 18 S 0.44 3.88 23.38 -107.50 -2.51 1.37 16 19 N -0.28 -3.91 12.49 60.35 0.75 -3.16 16 20 N -0.20 -3.15 11.24 32.74 0.37 -2.79 16 21 C -0.18 -2.94 5.71 -90.62 -0.52 -3.45 16 22 C -0.17 -2.94 9.74 -26.69 -0.26 -3.20 16 23 C -0.17 -2.98 9.87 -26.69 -0.26 -3.25 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.36 7.95 5.66 -40.82 -0.23 7.72 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.42 7.39 7.72 -40.82 -0.32 7.07 16 29 H 0.21 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 31 H 0.11 2.29 6.68 -51.93 -0.35 1.95 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.11 2.27 6.22 -51.93 -0.32 1.94 16 LS Contribution 306.57 15.07 4.62 4.62 Total: -1.00 -31.32 306.57 -6.63 -37.95 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -3.71 Total: 13.82 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.81 Total: -4.42 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 1.41 Total: -61.01 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.51 Total: 1.37 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.32 -6.63 -37.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752472816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.547 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds