Wall clock time and date at job start Tue Mar 31 2020 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09011 * 110.88136 * 54.30037 * 11 10 9 13 13 C 1.55153 * 111.01013 * 178.17855 * 11 10 9 14 14 C 1.54368 * 102.92223 * 153.54913 * 13 11 10 15 15 N 1.47023 * 107.28806 * 337.86602 * 14 13 11 16 16 C 1.34779 * 125.64916 * 178.94496 * 15 14 13 17 17 O 1.21565 * 120.00141 * 179.97438 * 16 15 14 18 18 C 1.47750 * 119.99735 * 359.95476 * 16 15 14 19 19 C 1.39356 * 124.11630 * 180.02562 * 18 16 15 20 20 N 1.30092 * 112.14657 * 179.97438 * 19 18 16 21 21 S 1.55922 * 108.75535 * 0.02562 * 20 19 18 22 22 N 1.31488 * 124.11935 * 359.70337 * 18 16 15 23 23 C 1.47423 * 108.70195 * 358.90529 * 15 14 13 24 24 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 27 27 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 28 28 H 1.09002 * 110.72499 * 271.94833 * 13 11 10 29 29 H 1.09009 * 110.71673 * 35.21940 * 13 11 10 30 30 H 1.09003 * 109.90485 * 218.42701 * 14 13 11 31 31 H 1.08997 * 109.97687 * 97.34392 * 14 13 11 32 32 H 1.08003 * 123.92398 * 0.02562 * 19 18 16 33 33 H 1.08997 * 110.36616 * 265.28782 * 23 15 14 34 34 H 1.09004 * 110.45952 * 143.01626 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3595 -4.7291 -0.8257 13 6 1.8030 -6.1832 -0.0448 14 6 0.7998 -7.1425 0.6307 15 7 -0.0947 -6.3243 1.4626 16 6 -1.1231 -6.7874 2.2005 17 8 -1.7987 -6.0159 2.8533 18 6 -1.4296 -8.2326 2.2156 19 6 -2.4704 -8.8033 2.9457 20 7 -2.5292 -10.0935 2.7894 21 16 -1.3881 -10.5339 1.8224 22 7 -0.7573 -9.1363 1.5371 23 6 0.3202 -4.9136 1.3567 24 1 -0.4850 0.8401 0.0004 25 1 0.3557 -2.3880 0.0005 26 1 2.6849 -3.7145 -0.8894 27 1 2.6848 -3.7144 0.8905 28 1 1.9922 -6.4848 -1.0751 29 1 2.7332 -6.1370 0.5216 30 1 1.3341 -7.8589 1.2547 31 1 0.2212 -7.6704 -0.1273 32 1 -3.1497 -8.2399 3.5682 33 1 0.9901 -4.6527 2.1759 34 1 -0.5515 -4.2591 1.3572 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752930296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:25 Heat of formation + Delta-G solvation = 44.882276 kcal Electronic energy + Delta-G solvation = -19367.669481 eV Core-core repulsion = 16235.327946 eV Total energy + Delta-G solvation = -3132.341535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.37193 -39.52248 -37.55814 -34.76891 -33.87701 -32.16290 -30.43433 -28.80296 -27.74149 -25.57585 -23.83980 -22.47542 -21.93066 -20.13399 -19.65719 -19.60451 -17.46103 -16.93153 -16.44269 -16.02176 -15.77856 -15.14130 -14.64267 -14.40199 -13.68505 -13.41357 -13.18738 -12.80857 -12.63438 -12.58636 -12.15807 -11.86356 -11.61564 -11.48815 -11.35625 -11.12836 -10.85598 -10.62283 -10.59661 -10.41286 -10.15554 -10.01070 -9.67469 -9.50521 -8.87517 -8.61200 -6.92470 -5.75133 -3.04710 0.13945 1.09002 1.30719 1.32961 2.86436 3.00176 3.45058 3.49831 3.51765 4.13177 4.39948 4.58988 4.71712 4.84486 4.87631 5.03712 5.20290 5.38170 5.53662 5.59646 5.74681 5.88245 5.95339 6.04692 6.05953 6.10044 6.24133 6.37232 6.41204 6.68616 6.81546 7.41958 7.70701 7.96849 8.43082 9.54379 10.11029 10.45349 11.47497 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.041489 B = 0.003265 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.711955 B = 8572.589893 C = 9110.393470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.128 4.128 14 C 0.113 3.887 15 N -0.596 5.596 16 C 0.611 3.389 17 O -0.522 6.522 18 C 0.021 3.979 19 C 0.090 3.910 20 N -0.578 5.578 21 S 0.702 5.298 22 N -0.539 5.539 23 C 0.116 3.884 24 H 0.256 0.744 25 H 0.384 0.616 26 H 0.025 0.975 27 H 0.022 0.978 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.215 0.785 33 H 0.076 0.924 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 -23.690 2.170 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.166 4.166 14 C -0.010 4.010 15 N -0.329 5.329 16 C 0.393 3.607 17 O -0.397 6.397 18 C -0.154 4.154 19 C -0.104 4.104 20 N -0.418 5.418 21 S 0.744 5.256 22 N -0.389 5.389 23 C -0.005 4.005 24 H 0.065 0.935 25 H 0.218 0.782 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.231 0.769 33 H 0.095 0.905 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.564 -25.108 1.860 25.183 hybrid contribution -0.334 2.506 0.607 2.600 sum -0.898 -22.602 2.467 22.754 Atomic orbital electron populations 1.69662 1.05104 1.25710 1.57510 1.24752 0.95518 0.97723 1.02904 0.86190 0.78611 0.83846 0.77522 1.21700 1.20782 1.21788 1.19206 0.91018 0.84119 1.42967 0.91154 1.42373 1.05910 0.99940 1.89566 1.20587 0.92702 0.84736 0.98262 1.22601 0.98213 0.94910 0.96770 0.89597 1.22726 0.98088 0.94483 1.01327 1.22097 0.91500 0.93390 0.94013 1.48340 1.29319 1.10222 1.45004 1.16338 0.80347 0.83859 0.80195 1.90872 1.49767 1.55878 1.43207 1.22556 0.96679 0.96540 0.99659 1.23803 0.98456 0.88087 1.00006 1.72271 1.28033 1.18108 1.23394 1.79085 1.08443 1.12213 1.25893 1.72715 1.32230 1.07758 1.26187 1.22449 1.00179 0.79924 0.97974 0.93461 0.78195 0.95717 0.95979 0.89909 0.90316 0.91117 0.90940 0.76854 0.90546 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.27 5.49 -59.91 -0.33 -18.60 16 10 C 0.17 3.15 5.71 -4.04 -0.02 3.13 16 11 C -0.11 -1.62 3.07 -88.47 -0.27 -1.89 16 12 H 0.09 1.38 8.14 -51.92 -0.42 0.96 16 13 C -0.13 -1.47 6.42 -24.87 -0.16 -1.63 16 14 C 0.11 1.31 5.49 -3.04 -0.02 1.29 16 15 N -0.60 -8.61 3.33 -171.64 -0.57 -9.18 16 16 C 0.61 9.16 7.85 -12.37 -0.10 9.06 16 17 O -0.52 -9.37 17.06 5.31 0.09 -9.27 16 18 C 0.02 0.25 6.71 -83.71 -0.56 -0.31 16 19 C 0.09 0.95 11.22 -17.87 -0.20 0.75 16 20 N -0.58 -5.70 11.41 19.43 0.22 -5.48 16 21 S 0.70 5.34 23.69 -107.50 -2.55 2.79 16 22 N -0.54 -5.56 8.64 23.18 0.20 -5.36 16 23 C 0.12 1.89 6.23 -2.53 -0.02 1.87 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.38 10.13 7.63 -40.82 -0.31 9.82 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.43 8.03 -51.93 -0.42 0.01 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.86 8.04 -51.92 -0.42 0.44 16 30 H 0.07 0.76 7.70 -51.93 -0.40 0.36 16 31 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 32 H 0.22 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 34 H 0.09 1.64 8.04 -51.93 -0.42 1.23 16 LS Contribution 305.33 15.07 4.60 4.60 Total: -1.00 -32.82 305.33 -8.23 -41.05 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.01 Total: 4.72 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -1.59 Total: 4.92 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: 0.25 Total: -66.22 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: 5.34 SS G_CDS: -2.55 Total: 2.79 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.82 -8.23 -41.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752930296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.930 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds