Wall clock time and date at job start Tue Mar 31 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48498 * 109.47142 * 240.00264 * 3 2 1 5 5 H 1.48502 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47050 * 119.99701 * 3 2 1 7 7 C 1.38813 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99314 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00539 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00372 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47375 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.91343 * 308.90038 * 11 10 9 13 13 C 1.55157 * 111.00585 * 184.99935 * 11 10 9 14 14 C 1.54321 * 103.10033 * 206.50978 * 13 11 10 15 15 N 1.47018 * 107.27524 * 22.10414 * 14 13 11 16 16 C 1.34774 * 125.65048 * 181.02410 * 15 14 13 17 17 O 1.21571 * 120.00183 * 180.02562 * 16 15 14 18 18 C 1.47749 * 120.00237 * 0.02562 * 16 15 14 19 19 C 1.39353 * 124.11924 * 179.97438 * 18 16 15 20 20 N 1.30093 * 112.14487 * 179.97438 * 19 18 16 21 21 S 1.55925 * 108.75478 * 0.02562 * 20 19 18 22 22 N 1.31495 * 124.11409 * 359.70611 * 18 16 15 23 23 C 1.47434 * 108.70129 * 1.05955 * 15 14 13 24 24 H 0.96999 * 119.99725 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99526 * 359.97438 * 9 7 2 26 26 H 1.08994 * 109.46923 * 59.99400 * 10 9 7 27 27 H 1.09000 * 109.46828 * 299.99857 * 10 9 7 28 28 H 1.09002 * 110.72219 * 88.05675 * 13 11 10 29 29 H 1.09003 * 110.71618 * 324.96287 * 13 11 10 30 30 H 1.09008 * 109.88104 * 141.52028 * 14 13 11 31 31 H 1.09002 * 109.88425 * 262.68213 * 14 13 11 32 32 H 1.07996 * 123.92412 * 0.02562 * 19 18 16 33 33 H 1.09000 * 110.36877 * 94.71035 * 23 15 14 34 34 H 1.09001 * 110.36202 * 216.92811 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 1.0637 -4.8197 -0.0035 12 1 0.3239 -4.7005 0.7881 13 6 1.7988 -6.1802 0.1226 14 6 0.8288 -7.1667 -0.5611 15 7 -0.0298 -6.3821 -1.4604 16 6 -1.0233 -6.8751 -2.2261 17 8 -1.6710 -6.1299 -2.9353 18 6 -1.3253 -8.3212 -2.2036 19 6 -2.3313 -8.9215 -2.9583 20 7 -2.3931 -10.2057 -2.7600 21 16 -1.2952 -10.6070 -1.7281 22 7 -0.6742 -9.1993 -1.4727 23 6 0.3767 -4.9668 -1.3865 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0016 26 1 2.6839 -3.7150 0.8887 27 1 2.6852 -3.7142 -0.8912 28 1 1.9433 -6.4449 1.1701 29 1 2.7539 -6.1525 -0.4019 30 1 1.3920 -7.9028 -1.1349 31 1 0.2186 -7.6676 0.1906 32 1 -2.9832 -8.3832 -3.6303 33 1 1.0818 -4.7325 -2.1840 34 1 -0.4965 -4.3176 -1.4502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752930299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:28 Heat of formation + Delta-G solvation = 44.923585 kcal Electronic energy + Delta-G solvation = -19351.017137 eV Core-core repulsion = 16218.677393 eV Total energy + Delta-G solvation = -3132.339744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37535 -39.52103 -37.55493 -34.76878 -33.88073 -32.16456 -30.43401 -28.81367 -27.74611 -25.57558 -23.83895 -22.46435 -21.93517 -20.14858 -19.66469 -19.61088 -17.46102 -16.92847 -16.44463 -16.02968 -15.78522 -15.14605 -14.64867 -14.38670 -13.69019 -13.41642 -13.18155 -12.81596 -12.63735 -12.58760 -12.15782 -11.87979 -11.62017 -11.49411 -11.35055 -11.12702 -10.84443 -10.61809 -10.60097 -10.41881 -10.16445 -10.03539 -9.67165 -9.50936 -8.86936 -8.61954 -6.92443 -5.74966 -3.04496 0.13576 1.08688 1.30266 1.32589 2.85749 2.99506 3.45494 3.49707 3.51033 4.12739 4.39512 4.59146 4.71836 4.84070 4.86785 5.03432 5.19895 5.37404 5.53230 5.59600 5.74289 5.88529 5.95376 6.04357 6.05321 6.09895 6.23505 6.36770 6.40361 6.68933 6.81501 7.41225 7.70254 7.96081 8.43308 9.54471 10.11200 10.45558 11.47636 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.041973 B = 0.003239 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.931690 B = 8643.028220 C = 9160.745359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.128 4.128 14 C 0.113 3.887 15 N -0.596 5.596 16 C 0.611 3.389 17 O -0.522 6.522 18 C 0.021 3.979 19 C 0.090 3.910 20 N -0.578 5.578 21 S 0.702 5.298 22 N -0.539 5.539 23 C 0.115 3.885 24 H 0.256 0.744 25 H 0.384 0.616 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.215 0.785 33 H 0.076 0.924 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 -23.757 -1.919 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.124 4.124 12 H 0.104 0.896 13 C -0.167 4.167 14 C -0.010 4.010 15 N -0.329 5.329 16 C 0.393 3.607 17 O -0.398 6.398 18 C -0.154 4.154 19 C -0.103 4.103 20 N -0.418 5.418 21 S 0.744 5.256 22 N -0.389 5.389 23 C -0.006 4.006 24 H 0.066 0.934 25 H 0.218 0.782 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.231 0.769 33 H 0.094 0.906 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.503 -25.160 -1.569 25.214 hybrid contribution -0.296 2.476 -0.672 2.583 sum -0.799 -22.684 -2.240 22.808 Atomic orbital electron populations 1.69654 1.05106 1.25829 1.57436 1.24753 0.95519 0.97719 1.02884 0.86261 0.78510 0.83539 0.77816 1.21255 1.21692 1.21291 1.19164 0.90991 0.84138 1.43093 0.91208 1.42366 1.05898 0.99927 1.89573 1.20581 0.92697 0.84726 0.98263 1.22632 0.98529 0.94874 0.96396 0.89559 1.22718 0.98359 0.94316 1.01272 1.22094 0.92308 0.93845 0.92737 1.48334 1.32166 1.10540 1.41831 1.16336 0.80146 0.83696 0.80540 1.90872 1.50116 1.57644 1.41139 1.22553 0.97292 0.96782 0.98823 1.23800 0.98475 0.87745 1.00325 1.72273 1.27983 1.18940 1.22617 1.79086 1.10805 1.11816 1.23883 1.72716 1.31327 1.08222 1.26626 1.22499 1.00451 0.79685 0.97942 0.93411 0.78197 0.95709 0.95970 0.89926 0.90341 0.91068 0.90955 0.76858 0.90599 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.28 5.55 -59.92 -0.33 -18.61 16 10 C 0.17 3.16 5.72 -4.05 -0.02 3.13 16 11 C -0.10 -1.61 3.06 -88.36 -0.27 -1.88 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.13 -1.47 6.41 -24.90 -0.16 -1.63 16 14 C 0.11 1.30 5.49 -3.07 -0.02 1.29 16 15 N -0.60 -8.57 3.33 -171.52 -0.57 -9.14 16 16 C 0.61 9.11 7.85 -12.37 -0.10 9.02 16 17 O -0.52 -9.32 17.06 5.30 0.09 -9.23 16 18 C 0.02 0.25 6.71 -83.71 -0.56 -0.31 16 19 C 0.09 0.94 11.22 -17.87 -0.20 0.74 16 20 N -0.58 -5.68 11.41 19.43 0.22 -5.46 16 21 S 0.70 5.32 23.69 -107.50 -2.55 2.77 16 22 N -0.54 -5.54 8.65 23.18 0.20 -5.34 16 23 C 0.12 1.87 6.34 -2.41 -0.02 1.85 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.38 10.14 7.67 -40.82 -0.31 9.82 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.43 7.97 -51.93 -0.41 0.02 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 30 H 0.07 0.76 7.68 -51.92 -0.40 0.36 16 31 H 0.07 0.80 7.58 -51.93 -0.39 0.41 16 32 H 0.22 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 34 H 0.09 1.62 8.03 -51.93 -0.42 1.21 16 LS Contribution 305.42 15.07 4.60 4.60 Total: -1.00 -32.79 305.42 -8.23 -41.01 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.00 Total: 4.73 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -1.59 Total: 4.84 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: 0.24 Total: -66.15 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -2.55 Total: 2.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.79 -8.23 -41.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752930299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.937 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds