Wall clock time and date at job start Tue Mar 31 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99761 * 2 1 4 4 H 1.48492 * 109.46893 * 269.99705 * 3 2 1 5 5 H 1.48499 * 109.47037 * 30.00124 * 3 2 1 6 6 H 1.48503 * 109.46829 * 150.00074 * 3 2 1 7 7 C 1.38814 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99593 * 157.93568 * 7 2 1 9 9 N 1.36940 * 120.00202 * 337.94375 * 7 2 1 10 10 C 1.46501 * 119.99532 * 324.92023 * 9 7 2 11 11 C 1.52994 * 109.47358 * 270.00061 * 10 9 7 12 12 N 1.46498 * 109.47241 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99886 * 179.97438 * 12 11 10 14 14 O 1.21621 * 120.00063 * 0.02562 * 13 12 11 15 15 C 1.47175 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.38241 * 128.48156 * 179.97438 * 15 13 12 17 17 N 1.31233 * 111.89142 * 180.02562 * 16 15 13 18 18 N 1.27334 * 120.04182 * 0.02562 * 17 16 15 19 19 S 1.56641 * 109.73542 * 359.69721 * 18 17 16 20 20 C 1.46495 * 120.00072 * 144.91982 * 9 7 2 21 21 C 1.52997 * 117.49951 * 3.24095 * 20 9 7 22 22 C 1.52998 * 117.50289 * 294.57795 * 20 9 7 23 23 H 0.96997 * 120.00560 * 356.07149 * 1 2 3 24 24 H 1.09005 * 109.46764 * 149.99958 * 10 9 7 25 25 H 1.08998 * 109.47343 * 30.00529 * 10 9 7 26 26 H 1.08997 * 109.47208 * 59.99875 * 11 10 9 27 27 H 1.09005 * 109.46939 * 300.00330 * 11 10 9 28 28 H 0.97000 * 119.99882 * 0.02562 * 12 11 10 29 29 H 1.08009 * 124.04955 * 0.02562 * 16 15 13 30 30 H 1.08998 * 115.54629 * 148.90668 * 20 9 7 31 31 H 1.09000 * 117.50293 * 359.97438 * 21 20 9 32 32 H 1.09005 * 117.50403 * 145.02097 * 21 20 9 33 33 H 1.08997 * 117.50151 * 214.97946 * 22 20 9 34 34 H 1.09005 * 117.49682 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0310 -1.2364 -0.3508 9 7 1.4008 -2.3445 0.4464 10 6 0.4457 -2.2801 1.5553 11 6 1.1887 -2.4652 2.8799 12 7 0.2334 -2.4014 3.9887 13 6 0.6643 -2.5403 5.2581 14 8 1.8462 -2.7182 5.4831 15 6 -0.2953 -2.4757 6.3722 16 6 -0.0493 -2.5946 7.7274 17 7 -1.1487 -2.4856 8.4356 18 7 -2.2653 -2.2942 7.8542 19 16 -2.0488 -2.2202 6.3045 20 6 1.7040 -3.6309 -0.1856 21 6 2.7656 -3.6441 -1.2872 22 6 1.2875 -3.8162 -1.6460 23 1 -0.4851 0.8380 0.0575 24 1 -0.2968 -3.0701 1.4417 25 1 -0.0521 -1.3104 1.5503 26 1 1.9311 -1.6753 2.9935 27 1 1.6864 -3.4350 2.8848 28 1 -0.7093 -2.2599 3.8092 29 1 0.9302 -2.7577 8.1522 30 1 1.6465 -4.5010 0.4684 31 1 3.2382 -2.6955 -1.5422 32 1 3.4063 -4.5230 -1.3584 33 1 0.9564 -4.8083 -1.9530 34 1 0.7874 -2.9810 -2.1366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753150837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:48 Heat of formation + Delta-G solvation = 88.862930 kcal Electronic energy + Delta-G solvation = -19292.883050 eV Core-core repulsion = 16162.448659 eV Total energy + Delta-G solvation = -3130.434391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97253 -39.36710 -37.20095 -34.99083 -33.37919 -32.29024 -30.90757 -28.49031 -27.06940 -24.61736 -23.07914 -21.71285 -21.31735 -20.64779 -19.84157 -19.33030 -17.52409 -16.36882 -16.07489 -15.88583 -15.50422 -14.99886 -14.87999 -14.57462 -13.96952 -13.92848 -12.94835 -12.86521 -12.74394 -12.14773 -12.01969 -11.70000 -11.13860 -10.83043 -10.79061 -10.48653 -10.44658 -10.26921 -10.25913 -10.12852 -10.01107 -9.93004 -9.72668 -9.37864 -8.83856 -8.59051 -6.73870 -5.94935 -3.54741 -0.43115 0.63358 1.29877 1.81331 2.99414 3.07692 3.27513 3.35817 3.40138 3.85036 4.34513 4.53439 4.70528 4.84938 5.18246 5.20273 5.39625 5.82254 5.89448 5.95711 6.08845 6.17577 6.34881 6.42703 6.47298 6.59850 6.83678 6.96388 7.14279 7.35988 7.41893 7.55598 7.68335 8.12458 8.31883 8.98895 9.61547 10.16012 11.02068 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.004329 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.252206 B = 6466.815906 C = 7087.466404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.013 3.987 3 Si 0.896 3.104 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.261 4.261 8 H 0.069 0.931 9 N -0.546 5.546 10 C 0.134 3.866 11 C 0.097 3.903 12 N -0.707 5.707 13 C 0.592 3.408 14 O -0.521 6.521 15 C -0.275 4.275 16 C 0.067 3.933 17 N -0.253 5.253 18 N -0.263 5.263 19 S 0.424 5.576 20 C 0.118 3.882 21 C -0.194 4.194 22 C -0.219 4.219 23 H 0.256 0.744 24 H 0.034 0.966 25 H 0.107 0.893 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.397 0.603 29 H 0.215 0.785 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 -5.390 8.628 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.188 4.188 3 Si 0.725 3.275 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.390 4.390 8 H 0.087 0.913 9 N -0.263 5.263 10 C 0.007 3.993 11 C -0.027 4.027 12 N -0.357 5.357 13 C 0.374 3.626 14 O -0.398 6.398 15 C -0.417 4.417 16 C -0.100 4.100 17 N -0.118 5.118 18 N -0.245 5.245 19 S 0.558 5.442 20 C 0.009 3.991 21 C -0.233 4.233 22 C -0.260 4.260 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.125 0.875 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.231 0.769 29 H 0.232 0.768 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.004 -5.105 9.125 11.592 hybrid contribution 1.473 0.740 -0.159 1.656 sum -3.531 -4.365 8.966 10.579 Atomic orbital electron populations 1.70018 1.05517 1.26232 1.50810 1.25121 0.95018 0.98835 0.99806 0.86415 0.79716 0.83415 0.77994 1.21093 1.21381 1.20129 1.19095 0.94625 0.85363 1.39889 0.91346 1.43206 1.49206 1.01774 1.32095 1.21121 0.91080 1.03845 0.83248 1.22524 0.92572 1.01668 0.85960 1.46036 1.12440 1.71664 1.05573 1.16540 0.86409 0.78141 0.81505 1.90847 1.15740 1.49262 1.83969 1.28281 0.99876 1.14008 0.99521 1.24458 0.99531 0.97821 0.88201 1.70686 0.93943 1.15182 1.31975 1.78844 1.20720 1.19881 1.05016 1.82708 1.00003 1.49196 1.12284 1.21243 1.00745 0.89848 0.87256 1.23046 0.91936 1.02002 1.06276 1.23358 0.97436 1.00730 1.04479 0.93413 0.94760 0.87515 0.90892 0.92455 0.76870 0.76817 0.89414 0.88394 0.90642 0.91138 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.16 11.33 55.49 0.63 -22.53 16 2 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 3 Si 0.90 20.39 29.61 -169.99 -5.03 15.36 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.26 -6.53 8.63 -15.06 -0.13 -6.66 16 8 H 0.07 1.74 6.55 -52.48 -0.34 1.39 16 9 N -0.55 -12.35 2.78 -165.67 -0.46 -12.81 16 10 C 0.13 2.71 5.45 -4.04 -0.02 2.69 16 11 C 0.10 1.76 6.00 -4.05 -0.02 1.74 16 12 N -0.71 -10.42 5.55 -61.47 -0.34 -10.76 16 13 C 0.59 8.89 7.80 -12.63 -0.10 8.79 16 14 O -0.52 -9.58 16.98 5.26 0.09 -9.49 16 15 C -0.28 -3.34 6.81 -35.95 -0.25 -3.58 16 16 C 0.07 0.76 11.55 -17.81 -0.21 0.56 16 17 N -0.25 -3.20 11.54 30.36 0.35 -2.85 16 18 N -0.26 -3.23 12.51 60.35 0.75 -2.47 16 19 S 0.42 4.22 23.05 -107.50 -2.48 1.75 16 20 C 0.12 2.35 6.56 -67.94 -0.45 1.90 16 21 C -0.19 -3.63 9.80 -26.69 -0.26 -3.89 16 22 C -0.22 -4.19 10.36 -26.69 -0.28 -4.47 16 23 H 0.26 6.50 8.32 -40.82 -0.34 6.16 16 24 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 25 H 0.11 2.43 5.36 -51.93 -0.28 2.15 16 26 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.40 4.87 7.90 -40.82 -0.32 4.54 16 29 H 0.22 1.99 8.06 -52.48 -0.42 1.57 16 30 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 31 H 0.10 2.00 6.37 -51.93 -0.33 1.67 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -28.93 312.07 -7.37 -36.30 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -3.79 Total: 5.51 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.80 Total: -2.69 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.93 Total: -51.43 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -2.48 Total: 1.75 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.93 -7.37 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753150837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.166 kcal (2) G-P(sol) polarization free energy of solvation -28.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds