Wall clock time and date at job start Tue Mar 31 2020 06:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36006 * 116.99943 * 2 1 4 4 C 1.38195 * 119.96488 * 359.97438 * 3 2 1 5 5 C 1.39795 * 119.93475 * 180.02562 * 4 3 2 6 6 C 1.47428 * 120.06786 * 179.72565 * 5 4 3 7 7 O 1.21541 * 119.99635 * 0.02562 * 6 5 4 8 8 O 1.34762 * 119.99914 * 180.02562 * 6 5 4 9 9 C 1.34866 * 116.99517 * 180.02562 * 8 6 5 10 10 H 1.07992 * 120.00219 * 359.97438 * 9 8 6 11 11 C 1.38804 * 119.99869 * 179.97438 * 9 8 6 12 12 N 1.31418 * 119.99715 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99768 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47370 * 89.99898 * 13 11 9 15 15 H 1.48503 * 109.46818 * 209.99940 * 13 11 9 16 16 H 1.48497 * 109.47112 * 329.99453 * 13 11 9 17 17 C 1.39800 * 119.87413 * 0.02562 * 5 4 3 18 18 C 1.38203 * 119.93140 * 0.02562 * 17 5 4 19 19 O 1.36005 * 119.96833 * 179.97438 * 18 17 5 20 20 C 1.42898 * 116.99675 * 0.02562 * 19 18 17 21 21 C 1.39257 * 119.96681 * 180.02562 * 3 2 1 22 22 O 1.35882 * 119.93924 * 0.02562 * 21 3 2 23 23 C 1.42900 * 117.00086 * 89.99949 * 22 21 3 24 24 H 1.09006 * 109.47277 * 60.00319 * 1 2 3 25 25 H 1.09004 * 109.47363 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47584 * 299.99899 * 1 2 3 27 27 H 1.08005 * 120.03629 * 0.02785 * 4 3 2 28 28 H 0.97005 * 119.99550 * 179.97438 * 12 11 9 29 29 H 1.07998 * 120.03762 * 179.97438 * 17 5 4 30 30 H 1.09006 * 109.46836 * 180.02562 * 20 19 18 31 31 H 1.08997 * 109.47449 * 299.99698 * 20 19 18 32 32 H 1.09001 * 109.47493 * 59.99744 * 20 19 18 33 33 H 1.08995 * 109.46925 * 300.00141 * 23 22 21 34 34 H 1.08999 * 109.46545 * 60.00018 * 23 22 21 35 35 H 1.09004 * 109.46925 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2930 2.3704 -0.0005 5 6 1.9283 3.6156 -0.0011 6 6 1.1275 4.8534 -0.0078 7 8 -0.0863 4.7918 -0.0123 8 8 1.7414 6.0531 -0.0088 9 6 0.9504 7.1455 -0.0145 10 1 -0.1237 7.0344 -0.0184 11 6 1.5171 8.4126 -0.0153 12 7 0.7464 9.4770 -0.0214 13 14 3.3752 8.6047 -0.0093 14 1 3.8725 8.6525 -1.4078 15 1 3.7404 9.8633 0.6892 16 1 3.9898 7.4512 0.6955 17 6 3.3246 3.6850 -0.0016 18 6 4.0728 2.5230 -0.0022 19 8 5.4312 2.5896 -0.0032 20 6 6.0167 3.8931 -0.0031 21 6 3.4371 1.2839 -0.0005 22 8 4.1753 0.1431 -0.0016 23 6 4.5272 -0.4008 -1.2753 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2145 2.3138 -0.0005 28 1 1.1424 10.3625 -0.0216 29 1 3.8182 4.6456 -0.0025 30 1 7.1031 3.8034 -0.0045 31 1 5.6963 4.4355 -0.8926 32 1 5.6976 4.4348 0.8873 33 1 3.6207 -0.6380 -1.8321 34 1 5.1151 0.3290 -1.8320 35 1 5.1140 -1.3084 -1.1333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003564537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:37 Heat of formation + Delta-G solvation = -152.923072 kcal Electronic energy + Delta-G solvation = -22343.797142 eV Core-core repulsion = 18695.539750 eV Total energy + Delta-G solvation = -3648.257392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79300 -39.20739 -38.99756 -37.73203 -36.25732 -35.21793 -32.48342 -30.55028 -29.63954 -27.81967 -27.13728 -26.94473 -25.48734 -23.15145 -21.86431 -20.50171 -18.62616 -18.12297 -17.51416 -17.08171 -16.55969 -16.23923 -16.07468 -15.51516 -15.18263 -14.99436 -14.78757 -14.66606 -14.54683 -14.13805 -13.35435 -13.04181 -12.56844 -12.47391 -12.35895 -11.97365 -11.84832 -11.57923 -11.52375 -11.46237 -11.16773 -10.76742 -10.54844 -10.39670 -9.95621 -9.84782 -9.37173 -8.82778 -8.23803 -8.15994 -6.53407 -4.23610 0.81332 1.41375 2.78279 2.97309 3.12762 3.15411 3.23076 3.61516 3.75716 3.93768 4.08287 4.10829 4.93054 5.00026 5.05134 5.07058 5.16911 5.19235 5.21785 5.25059 5.35964 5.40782 5.41145 5.49055 5.54405 5.58805 5.67989 6.18122 6.26911 6.34483 6.58066 7.00304 7.22056 7.57121 7.68850 7.88504 8.48002 8.83692 9.52026 10.54126 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.005702 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.876340 B = 4908.999734 C = 6269.949190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.304 6.304 3 C 0.139 3.861 4 C -0.183 4.183 5 C -0.012 4.012 6 C 0.441 3.559 7 O -0.532 6.532 8 O -0.238 6.238 9 C -0.372 4.372 10 H 0.113 0.887 11 C 0.066 3.934 12 N -0.863 5.863 13 Si 0.903 3.097 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.259 1.259 17 C -0.191 4.191 18 C 0.138 3.862 19 O -0.304 6.304 20 C 0.021 3.979 21 C 0.039 3.961 22 O -0.312 6.312 23 C 0.035 3.965 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.149 0.851 28 H 0.283 0.717 29 H 0.149 0.851 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.513 -15.799 -1.739 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.092 3.908 4 C -0.202 4.202 5 C -0.013 4.013 6 C 0.288 3.712 7 O -0.429 6.429 8 O -0.146 6.146 9 C -0.448 4.448 10 H 0.131 0.869 11 C -0.139 4.139 12 N -0.501 5.501 13 Si 0.728 3.272 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.183 1.183 17 C -0.211 4.211 18 C 0.092 3.908 19 O -0.217 6.217 20 C -0.074 4.074 21 C -0.006 4.006 22 O -0.228 6.228 23 C -0.059 4.059 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.167 0.833 28 H 0.093 0.907 29 H 0.166 0.834 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.489 -15.997 -1.590 18.180 hybrid contribution 0.317 0.891 -0.242 0.976 sum 8.805 -15.106 -1.832 17.581 Atomic orbital electron populations 1.23159 0.77985 1.03923 1.02180 1.86116 1.21535 1.25530 1.88504 1.18682 0.90373 0.84819 0.96886 1.21108 1.01173 0.89829 1.08071 1.18913 0.92140 0.91551 0.98722 1.20259 0.86388 0.83843 0.80667 1.90681 1.14749 1.87383 1.50073 1.83527 1.41037 1.14039 1.76036 1.20758 0.92473 0.80734 1.50790 0.86944 1.24590 1.00314 0.93541 0.95436 1.69588 1.36274 0.98287 1.45911 0.86240 0.83451 0.78381 0.79100 1.19576 1.20424 1.18279 1.21446 0.93709 0.98039 1.07889 1.18792 0.83123 0.92283 0.96593 1.86107 1.16169 1.31000 1.88416 1.23185 0.98864 0.83057 1.02312 1.17053 0.86280 0.84570 1.12712 1.86091 1.70361 1.37652 1.28736 1.22971 0.99532 0.98364 0.85059 0.92213 0.88089 0.92100 0.83348 0.90697 0.83378 0.87995 0.92166 0.92019 0.93746 0.93714 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.30 10.27 -34.50 -0.35 -4.66 16 3 C 0.14 2.22 6.69 -39.22 -0.26 1.96 16 4 C -0.18 -3.16 8.58 -39.02 -0.33 -3.49 16 5 C -0.01 -0.23 5.87 -104.99 -0.62 -0.84 16 6 C 0.44 10.68 7.83 34.47 0.27 10.95 16 7 O -0.53 -14.18 15.58 -19.30 -0.30 -14.48 16 8 O -0.24 -6.21 7.81 -21.76 -0.17 -6.38 16 9 C -0.37 -10.80 10.11 30.94 0.31 -10.49 16 10 H 0.11 3.59 7.09 -52.49 -0.37 3.22 16 11 C 0.07 1.84 5.50 -17.52 -0.10 1.74 16 12 N -0.86 -24.69 13.96 55.49 0.77 -23.92 16 13 Si 0.90 20.36 28.62 -169.99 -4.86 15.50 16 14 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 17 C -0.19 -3.38 8.60 -39.01 -0.34 -3.71 16 18 C 0.14 2.26 6.69 -39.21 -0.26 2.00 16 19 O -0.30 -4.47 10.27 -34.50 -0.35 -4.82 16 20 C 0.02 0.24 9.81 101.05 0.99 1.23 16 21 C 0.04 0.65 5.75 -38.82 -0.22 0.42 16 22 O -0.31 -4.85 9.96 -44.76 -0.45 -5.29 16 23 C 0.04 0.41 11.13 101.05 1.12 1.54 16 24 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 25 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.62 7.66 -51.93 -0.40 0.23 16 27 H 0.15 2.45 5.86 -52.48 -0.31 2.15 16 28 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.15 2.56 5.82 -52.49 -0.31 2.25 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 32 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -32.97 312.57 -3.27 -36.24 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -3.82 Total: 0.58 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 1.56 Total: 2.52 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.77 Total: -23.92 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.63 Total: -35.64 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.86 Total: 15.50 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.97 -3.27 -36.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003564537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.684 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds