Wall clock time and date at job start Tue Mar 31 2020 06:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35811 * 116.99811 * 2 1 4 4 C 1.39103 * 119.87298 * 0.02562 * 3 2 1 5 5 C 1.37561 * 120.29438 * 180.02562 * 4 3 2 6 6 C 1.39990 * 120.02277 * 359.97438 * 5 4 3 7 7 C 1.47116 * 120.12552 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00115 * 179.72960 * 7 6 5 9 9 O 1.34814 * 120.00117 * 0.02562 * 7 6 5 10 10 C 1.34868 * 117.00250 * 179.72747 * 9 7 6 11 11 H 1.08004 * 119.99836 * 359.97438 * 10 9 7 12 12 C 1.38775 * 120.00537 * 180.02562 * 10 9 7 13 13 N 1.31441 * 119.99601 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00442 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46734 * 60.00315 * 14 12 10 16 16 H 1.48501 * 109.47126 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47409 * 300.00295 * 14 12 10 18 18 C 1.40304 * 119.74301 * 0.23835 * 6 5 4 19 19 O 1.35761 * 120.14197 * 179.72036 * 18 6 5 20 20 C 1.42908 * 116.99528 * 90.00196 * 19 18 6 21 21 C 1.38783 * 119.71221 * 359.49003 * 18 6 5 22 22 O 1.36113 * 120.01392 * 180.25185 * 21 18 6 23 23 C 1.42904 * 116.99621 * 270.30044 * 22 21 18 24 24 H 1.09005 * 109.47126 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46924 * 299.99912 * 1 2 3 26 26 H 1.09001 * 109.47250 * 59.99548 * 1 2 3 27 27 H 1.07997 * 119.85606 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.98942 * 179.97438 * 5 4 3 29 29 H 0.97002 * 119.99944 * 180.02562 * 13 12 10 30 30 H 1.08996 * 109.46580 * 180.02562 * 20 19 18 31 31 H 1.08998 * 109.47088 * 300.00163 * 20 19 18 32 32 H 1.08995 * 109.46994 * 59.99888 * 20 19 18 33 33 H 1.08997 * 109.47174 * 299.99778 * 23 22 21 34 34 H 1.08998 * 109.47454 * 60.00101 * 23 22 21 35 35 H 1.09004 * 109.46557 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2853 2.3750 0.0005 5 6 1.9007 3.6053 0.0000 6 6 3.2981 3.6894 -0.0005 7 6 3.9586 5.0039 -0.0017 8 8 5.1723 5.0744 0.0028 9 8 3.2181 6.1305 -0.0017 10 6 3.8858 7.3022 0.0030 11 1 4.9659 7.3083 0.0069 12 6 3.1853 8.5002 0.0038 13 7 1.8710 8.4929 -0.0004 14 14 4.1102 10.1231 0.0110 15 1 4.9674 10.2096 -1.1987 16 1 3.1389 11.2464 0.0101 17 1 4.9597 10.2034 1.2264 18 6 4.0661 2.5153 -0.0056 19 8 5.4218 2.5874 -0.0119 20 6 6.0755 2.6203 1.2585 21 6 3.4340 1.2798 0.0007 22 8 4.1731 0.1368 0.0010 23 6 4.5256 -0.4081 -1.2722 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.2071 2.3134 0.0005 28 1 1.3057 4.5065 0.0000 29 1 1.3813 9.3302 -0.0003 30 1 7.1539 2.6784 1.1106 31 1 5.7383 3.4927 1.8181 32 1 5.8329 1.7153 1.8154 33 1 3.6194 -0.6455 -1.8293 34 1 5.1140 0.3210 -1.8291 35 1 5.1120 -1.3157 -1.1291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003564576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:41 Heat of formation + Delta-G solvation = -151.463745 kcal Electronic energy + Delta-G solvation = -22508.968465 eV Core-core repulsion = 18860.774355 eV Total energy + Delta-G solvation = -3648.194111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65127 -39.06808 -38.41144 -37.32886 -36.04664 -34.94152 -32.17220 -30.25966 -29.80657 -27.63958 -26.98708 -26.10710 -25.40414 -23.15836 -21.96821 -20.32181 -18.47676 -17.83866 -17.46064 -16.98293 -16.17541 -16.02794 -15.88146 -15.28682 -14.89863 -14.71653 -14.56265 -14.37213 -14.31110 -14.16255 -13.10956 -12.94221 -12.63947 -12.29294 -12.11803 -11.80149 -11.60799 -11.43647 -11.30393 -11.09830 -10.82557 -10.48090 -10.37110 -10.14000 -9.84142 -9.46503 -8.92335 -8.59541 -8.50601 -8.06705 -6.45763 -4.07811 1.05974 1.21231 3.02189 3.11854 3.17691 3.21424 3.26313 3.77877 3.97957 4.01813 4.40039 4.58026 4.87369 5.02892 5.04654 5.14758 5.18774 5.35070 5.41984 5.44619 5.48393 5.53876 5.69360 5.72974 5.78663 5.97055 6.09745 6.24275 6.46100 6.61682 6.88042 7.11593 7.37359 7.51437 7.90937 7.92941 8.72589 9.03501 9.84845 10.72229 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.023398 B = 0.004949 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.400917 B = 5656.374752 C = 6664.731096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.134 3.866 4 C -0.216 4.216 5 C -0.022 4.022 6 C -0.137 4.137 7 C 0.437 3.563 8 O -0.535 6.535 9 O -0.209 6.209 10 C -0.371 4.371 11 H 0.097 0.903 12 C 0.041 3.959 13 N -0.862 5.862 14 Si 0.945 3.055 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.269 1.269 18 C 0.168 3.832 19 O -0.312 6.312 20 C 0.055 3.945 21 C 0.025 3.975 22 O -0.317 6.317 23 C 0.037 3.963 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.139 0.861 28 H 0.153 0.847 29 H 0.271 0.729 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 -15.164 0.115 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.087 3.913 4 C -0.234 4.234 5 C -0.040 4.040 6 C -0.139 4.139 7 C 0.285 3.715 8 O -0.432 6.432 9 O -0.117 6.117 10 C -0.448 4.448 11 H 0.114 0.886 12 C -0.164 4.164 13 N -0.499 5.499 14 Si 0.770 3.230 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.194 1.194 18 C 0.122 3.878 19 O -0.228 6.228 20 C -0.039 4.039 21 C -0.020 4.020 22 O -0.233 6.233 23 C -0.058 4.058 24 H 0.117 0.883 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.157 0.843 28 H 0.171 0.829 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.184 -15.259 0.119 15.415 hybrid contribution -0.074 1.005 -0.083 1.011 sum -2.257 -14.254 0.036 14.431 Atomic orbital electron populations 1.23123 0.78374 1.03880 1.01753 1.86090 1.21298 1.26252 1.88181 1.19379 0.90973 0.84900 0.96001 1.21135 1.00320 0.91364 1.10615 1.21397 0.93196 0.98148 0.91279 1.19696 0.93498 0.91718 1.08965 1.20312 0.85943 0.84987 0.80274 1.90672 1.14626 1.87554 1.50363 1.83902 1.39084 1.13210 1.75498 1.21233 0.92591 0.79674 1.51252 0.88559 1.25348 0.95815 0.98906 0.96285 1.69972 1.05843 1.28096 1.46011 0.85715 0.78620 0.79286 0.79420 1.19422 1.20356 1.19436 1.18683 0.84274 0.89280 0.95566 1.85888 1.13514 1.93615 1.29754 1.22834 0.97222 1.00130 0.83708 1.18002 0.86620 0.85945 1.11406 1.86074 1.70606 1.37547 1.29114 1.22979 0.99497 0.98448 0.84878 0.88260 0.92306 0.92403 0.84325 0.82904 0.91947 0.89088 0.92997 0.94054 0.93868 0.93255 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.12 10.26 -34.02 -0.35 -4.47 16 3 C 0.13 2.09 6.70 -38.97 -0.26 1.83 16 4 C -0.22 -3.20 9.01 -39.51 -0.36 -3.56 16 5 C -0.02 -0.40 9.60 -39.17 -0.38 -0.77 16 6 C -0.14 -2.93 5.89 -104.86 -0.62 -3.54 16 7 C 0.44 11.37 7.82 34.33 0.27 11.64 16 8 O -0.53 -14.75 13.22 -26.67 -0.35 -15.10 16 9 O -0.21 -6.00 8.98 -21.90 -0.20 -6.20 16 10 C -0.37 -10.93 9.65 30.93 0.30 -10.64 16 11 H 0.10 2.85 6.86 -52.48 -0.36 2.49 16 12 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 13 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 14 Si 0.95 21.12 29.55 -169.99 -5.02 16.10 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 C 0.17 3.34 5.75 -38.60 -0.22 3.12 16 19 O -0.31 -6.36 8.62 -47.66 -0.41 -6.77 16 20 C 0.05 0.94 10.48 101.05 1.06 2.00 16 21 C 0.03 0.44 5.74 -39.09 -0.22 0.22 16 22 O -0.32 -5.21 9.97 -45.54 -0.45 -5.67 16 23 C 0.04 0.47 11.13 101.05 1.13 1.60 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 26 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 27 H 0.14 1.58 6.27 -52.49 -0.33 1.25 16 28 H 0.15 2.85 7.60 -52.49 -0.40 2.45 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.05 0.97 7.48 -51.93 -0.39 0.58 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -34.31 313.31 -3.66 -37.97 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.94 Total: -0.72 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 1.59 Total: 4.13 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.76 Total: -23.98 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -1.76 Total: -38.21 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.31 -3.66 -37.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003564576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.496 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds