Wall clock time and date at job start Tue Mar 31 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00154 * 2 1 4 4 C 1.50697 * 109.47398 * 293.95339 * 3 2 1 5 5 H 1.08003 * 119.99528 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00389 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99716 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99896 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47225 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46993 * 120.00456 * 8 6 4 11 11 H 1.48502 * 109.47347 * 240.00155 * 8 6 4 12 12 C 1.46905 * 111.00066 * 123.95135 * 2 1 3 13 13 C 1.50707 * 109.47016 * 66.04612 * 12 2 1 14 14 O 1.21295 * 119.99489 * 0.02562 * 13 12 2 15 15 N 1.34769 * 119.99974 * 180.02562 * 13 12 2 16 16 C 1.39985 * 119.99929 * 185.52765 * 15 13 12 17 17 C 1.38855 * 120.07404 * 24.81827 * 16 15 13 18 18 C 1.38112 * 119.94300 * 179.97438 * 17 16 15 19 19 C 1.38304 * 120.09178 * 359.97438 * 18 17 16 20 20 C 1.38258 * 120.14728 * 0.02562 * 19 18 17 21 21 C 1.38232 * 120.06104 * 0.02562 * 20 19 18 22 22 Cl 1.73591 * 120.04825 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47038 * 296.04464 * 1 2 3 24 24 H 1.08995 * 109.47277 * 56.04215 * 1 2 3 25 25 H 1.08995 * 109.47218 * 176.04804 * 1 2 3 26 26 H 1.09009 * 109.47363 * 53.95058 * 3 2 1 27 27 H 1.09000 * 109.47741 * 173.95142 * 3 2 1 28 28 H 0.97005 * 119.99866 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47474 * 306.05014 * 12 2 1 30 30 H 1.08997 * 109.47375 * 186.04502 * 12 2 1 31 31 H 0.97000 * 120.00285 * 5.52359 * 15 13 12 32 32 H 1.08000 * 120.03004 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.95821 * 180.02562 * 18 17 16 34 34 H 1.07991 * 119.92386 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.96678 * 179.72372 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5114 -2.0484 6 6 2.0269 3.3494 -1.5285 7 7 2.7120 4.0018 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.8158 3.2440 -3.9915 10 1 0.7552 5.3877 -2.8597 11 1 2.8250 4.5943 -3.8431 12 6 1.9955 -0.7660 1.1377 13 6 1.6370 -2.2205 0.9730 14 8 1.0054 -2.5832 0.0030 15 7 2.0180 -3.1179 1.9033 16 6 1.7871 -4.4828 1.6952 17 6 1.6621 -4.9784 0.4041 18 6 1.4348 -6.3256 0.2018 19 6 1.3321 -7.1815 1.2832 20 6 1.4560 -6.6922 2.5704 21 6 1.6825 -5.3447 2.7800 22 17 1.8373 -4.7305 4.3962 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8523 25 1 -0.3633 -1.0252 -0.0708 26 1 1.5611 1.9274 0.8309 27 1 3.0797 1.3444 0.1083 28 1 2.9866 4.9179 -0.7769 29 1 1.5611 -0.3873 2.0629 30 1 3.0797 -0.6611 1.1757 31 1 2.4523 -2.8182 2.7172 32 1 1.7425 -4.3110 -0.4412 33 1 1.3379 -6.7113 -0.8023 34 1 1.1548 -8.2345 1.1219 35 1 1.3709 -7.3624 3.4129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007913145.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:43 Heat of formation + Delta-G solvation = -2.181011 kcal Electronic energy + Delta-G solvation = -19209.255572 eV Core-core repulsion = 16040.536762 eV Total energy + Delta-G solvation = -3168.718810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64423 -38.71616 -36.67832 -36.12693 -34.74713 -32.54578 -30.91911 -30.20996 -27.97786 -26.90503 -24.36544 -23.28226 -22.51918 -20.82422 -20.02776 -18.09111 -17.05275 -16.68263 -16.21120 -15.63342 -15.06057 -14.72700 -14.56521 -14.22392 -14.01603 -13.79885 -13.70888 -13.33087 -12.49040 -12.27160 -11.90007 -11.86256 -11.66173 -11.53564 -11.20888 -11.11349 -10.89081 -10.70817 -10.64055 -10.51038 -10.00042 -9.52904 -9.16541 -8.96292 -8.46514 -8.21316 -7.31948 -6.05505 -4.06185 0.93075 1.10927 1.87955 2.69822 2.91932 3.31108 3.38532 3.44688 3.54848 4.41705 4.56134 4.72025 4.86044 4.98188 5.06673 5.24978 5.26690 5.31103 5.62527 5.65757 5.71799 5.96256 6.00030 6.21589 6.26672 6.33076 6.38486 6.75297 6.86395 7.15899 7.25123 7.29789 7.76017 7.98728 8.11664 8.21737 8.47877 9.01926 9.58157 11.05633 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033315 B = 0.003373 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.259935 B = 8299.648944 C = 8901.672567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.522 5.522 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.038 3.962 13 C 0.516 3.484 14 O -0.492 6.492 15 N -0.678 5.678 16 C 0.173 3.827 17 C -0.123 4.123 18 C -0.092 4.092 19 C -0.136 4.136 20 C -0.090 4.090 21 C -0.077 4.077 22 Cl -0.071 7.071 23 H 0.006 0.994 24 H 0.076 0.924 25 H 0.063 0.937 26 H -0.006 1.006 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.412 0.588 32 H 0.158 0.842 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -20.578 8.906 22.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.247 5.247 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.084 0.916 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.094 4.094 13 C 0.305 3.695 14 O -0.364 6.364 15 N -0.324 5.324 16 C 0.076 3.924 17 C -0.144 4.144 18 C -0.110 4.110 19 C -0.155 4.155 20 C -0.110 4.110 21 C -0.107 4.107 22 Cl -0.042 7.042 23 H 0.025 0.975 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.011 0.989 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.248 0.752 32 H 0.176 0.824 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.058 -20.696 7.909 22.181 hybrid contribution -0.147 1.177 0.668 1.362 sum -1.205 -19.519 8.578 21.355 Atomic orbital electron populations 1.22384 0.87922 1.01171 1.00215 1.61895 1.07929 1.17485 1.37405 1.19811 0.95419 0.80885 0.97115 1.21180 1.34768 0.96857 1.01591 0.91587 1.24984 0.95265 0.97295 0.97103 1.69962 1.38474 1.11449 1.34075 0.86416 0.78172 0.79263 0.83446 1.19564 1.21116 1.20982 1.21967 1.02412 0.89225 0.95792 1.21320 0.77960 0.88523 0.81709 1.90619 1.36400 1.80051 1.29372 1.43847 1.60692 1.03976 1.23846 1.17615 0.98608 0.83448 0.92695 1.21551 1.00646 0.96182 0.95997 1.21213 0.97561 0.92799 0.99466 1.21064 1.02574 1.00174 0.91729 1.20832 0.99451 0.92554 0.98127 1.20680 1.11023 0.94409 0.84568 1.98358 1.96534 1.87832 1.21465 0.97528 0.90527 0.91811 0.98854 0.95058 0.92954 0.92563 0.87856 0.75163 0.82446 0.85088 0.85236 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.03 60.07 0.54 1.19 16 2 N -0.52 -11.42 4.49 -245.83 -1.10 -12.52 16 3 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 4 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 16 5 H 0.07 1.87 7.12 -52.48 -0.37 1.50 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.04 0.64 5.45 -4.97 -0.03 0.62 16 13 C 0.52 8.24 7.36 -10.99 -0.08 8.16 16 14 O -0.49 -9.25 11.48 5.54 0.06 -9.19 16 15 N -0.68 -8.69 5.19 -9.83 -0.05 -8.74 16 16 C 0.17 2.22 6.43 -83.64 -0.54 1.68 16 17 C -0.12 -1.60 8.72 -39.40 -0.34 -1.94 16 18 C -0.09 -0.94 10.04 -39.60 -0.40 -1.33 16 19 C -0.14 -1.20 10.04 -39.55 -0.40 -1.59 16 20 C -0.09 -0.85 9.82 -39.58 -0.39 -1.23 16 21 C -0.08 -0.86 6.34 -39.32 -0.25 -1.11 16 22 Cl -0.07 -0.71 27.78 -51.86 -1.44 -2.15 16 23 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.08 1.70 6.76 -51.93 -0.35 1.34 16 25 H 0.06 1.27 5.88 -51.93 -0.31 0.96 16 26 H -0.01 -0.17 8.12 -51.92 -0.42 -0.59 16 27 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 30 H 0.10 1.61 7.93 -51.93 -0.41 1.20 16 31 H 0.41 4.33 7.76 -40.82 -0.32 4.01 16 32 H 0.16 2.36 5.79 -52.49 -0.30 2.05 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -31.46 311.00 -8.57 -40.03 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.14 Total: 0.66 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.29 Total: -3.72 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.42 Total: -46.97 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.06 Total: -9.19 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.44 Total: -2.15 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.46 -8.57 -40.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007913145.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.846 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds