Wall clock time and date at job start Tue Mar 31 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99626 * 2 1 4 4 C 1.50707 * 109.47104 * 66.04266 * 3 2 1 5 5 H 1.07995 * 119.99874 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99673 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00085 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99726 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 59.99803 * 8 6 4 10 10 H 1.48509 * 109.46952 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47066 * 299.99768 * 8 6 4 12 12 C 1.46890 * 111.00387 * 236.04151 * 2 1 3 13 13 C 1.50696 * 109.47450 * 293.95447 * 12 2 1 14 14 O 1.21286 * 120.00042 * 359.97438 * 13 12 2 15 15 N 1.34779 * 120.00333 * 179.97438 * 13 12 2 16 16 C 1.39919 * 120.00218 * 174.72951 * 15 13 12 17 17 C 1.38902 * 120.06373 * 326.53933 * 16 15 13 18 18 C 1.38096 * 119.95641 * 179.72633 * 17 16 15 19 19 C 1.38291 * 120.08307 * 0.57622 * 18 17 16 20 20 C 1.38383 * 120.12237 * 359.69754 * 19 18 17 21 21 Cl 1.73606 * 119.97276 * 180.02562 * 20 19 18 22 22 C 1.38250 * 120.04675 * 0.02562 * 20 19 18 23 23 H 1.09008 * 109.46474 * 183.95494 * 1 2 3 24 24 H 1.08998 * 109.47606 * 303.95068 * 1 2 3 25 25 H 1.08993 * 109.46986 * 63.96238 * 1 2 3 26 26 H 1.09004 * 109.47051 * 186.04123 * 3 2 1 27 27 H 1.09001 * 109.47274 * 306.04462 * 3 2 1 28 28 H 0.97006 * 119.99746 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47019 * 53.95554 * 12 2 1 30 30 H 1.08998 * 109.47270 * 173.95235 * 12 2 1 31 31 H 0.97007 * 119.99434 * 354.72724 * 15 13 12 32 32 H 1.07998 * 120.02228 * 0.02562 * 17 16 15 33 33 H 1.07998 * 119.96425 * 180.27491 * 18 17 16 34 34 H 1.07991 * 119.93851 * 179.72389 * 19 18 17 35 35 H 1.08002 * 120.04050 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6367 2.0472 1.2985 5 1 1.0744 1.5113 2.0488 6 6 2.0265 3.3496 1.5284 7 7 2.7117 4.0020 0.6149 8 14 1.5826 4.1869 3.1382 9 1 2.1753 3.4299 4.2699 10 1 2.1146 5.5734 3.1381 11 1 0.1055 4.2230 3.2864 12 6 1.9955 -0.7660 -1.1374 13 6 1.6371 -2.2204 -0.9727 14 8 1.0056 -2.5833 -0.0028 15 7 2.0182 -3.1180 -1.9030 16 6 1.7827 -4.4818 -1.6973 17 6 1.8304 -5.0103 -0.4136 18 6 1.5919 -6.3556 -0.2124 19 6 1.3174 -7.1795 -1.2887 20 6 1.2747 -6.6576 -2.5696 21 17 0.9291 -7.6953 -3.9178 22 6 1.5069 -5.3105 -2.7764 23 1 -0.3632 -1.0253 0.0709 24 1 -0.3634 0.5739 0.8524 25 1 -0.3633 0.4511 -0.9233 26 1 3.0797 1.3445 -0.1082 27 1 1.5610 1.9274 -0.8309 28 1 2.9862 4.9182 0.7769 29 1 1.5612 -0.3873 -2.0627 30 1 3.0798 -0.6611 -1.1754 31 1 2.4559 -2.8185 -2.7153 32 1 2.0490 -4.3687 0.4272 33 1 1.6246 -6.7658 0.7861 34 1 1.1357 -8.2320 -1.1292 35 1 1.4731 -4.9032 -3.7761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019834123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:46 Heat of formation + Delta-G solvation = -4.486219 kcal Electronic energy + Delta-G solvation = -18976.686593 eV Core-core repulsion = 15807.867822 eV Total energy + Delta-G solvation = -3168.818771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59383 -38.76341 -36.77579 -36.04368 -34.69219 -32.55046 -30.98459 -30.21040 -28.01981 -26.92207 -24.38078 -23.15302 -22.66198 -20.82432 -20.05000 -18.06531 -17.10555 -16.48736 -16.20107 -15.69947 -15.08243 -14.94440 -14.56916 -14.18403 -13.95789 -13.84590 -13.68900 -13.43651 -12.48876 -12.12634 -12.10862 -11.88547 -11.70907 -11.50147 -11.20089 -11.11287 -10.88810 -10.75764 -10.58144 -10.40263 -10.02075 -9.58073 -9.19760 -9.01740 -8.46639 -8.30431 -7.33286 -6.06259 -4.07163 0.97263 1.00608 1.83875 2.68912 2.96801 3.33586 3.36932 3.41036 3.51225 4.40781 4.56566 4.80549 4.84299 4.96063 4.99713 5.19173 5.30092 5.34305 5.47577 5.61272 5.68926 5.91809 6.05196 6.14952 6.23560 6.28390 6.35050 6.73339 6.85551 7.14908 7.23702 7.30429 7.74696 7.97872 8.10817 8.23431 8.46959 9.00312 9.57125 11.04771 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.048462 B = 0.002829 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.627938 B = 9893.695207 C =10187.033213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.523 5.523 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.065 0.935 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.900 3.100 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.039 3.961 13 C 0.515 3.485 14 O -0.494 6.494 15 N -0.683 5.683 16 C 0.173 3.827 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.134 4.134 20 C -0.015 4.015 21 Cl -0.074 7.074 22 C -0.146 4.146 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.006 0.994 26 H 0.031 0.969 27 H -0.007 1.007 28 H 0.262 0.738 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.411 0.589 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 -20.516 -9.013 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.248 5.248 3 C 0.069 3.931 4 C -0.546 4.546 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.093 4.093 13 C 0.303 3.697 14 O -0.365 6.365 15 N -0.330 5.330 16 C 0.077 3.923 17 C -0.138 4.138 18 C -0.105 4.105 19 C -0.153 4.153 20 C -0.043 4.043 21 Cl -0.045 7.045 22 C -0.167 4.167 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.025 0.975 26 H 0.049 0.951 27 H 0.011 0.989 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.247 0.753 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.983 -20.792 -7.987 22.295 hybrid contribution -0.229 1.042 -0.597 1.222 sum -1.212 -19.750 -8.584 21.569 Atomic orbital electron populations 1.22382 0.87919 1.01159 1.00204 1.61885 1.07934 1.17497 1.37503 1.19799 0.95387 0.80868 0.97071 1.21104 1.34990 0.96880 1.01611 0.91706 1.24978 0.95232 0.97271 0.97097 1.69942 1.38338 1.11555 1.34155 0.86523 0.78762 0.78240 0.83688 1.20095 1.21352 1.20227 1.21955 1.02363 0.89304 0.95714 1.21322 0.78047 0.88494 0.81817 1.90674 1.36356 1.80251 1.29250 1.43785 1.61172 1.04001 1.24029 1.17601 0.97537 0.83568 0.93565 1.21393 1.00095 0.95493 0.96843 1.21027 0.97812 0.92836 0.98819 1.21007 1.02993 1.00721 0.90595 1.20570 1.03914 0.90991 0.88782 1.98368 1.93563 1.66991 1.45556 1.20706 1.04696 0.92055 0.99268 0.91820 0.90545 0.97541 0.95080 0.98874 0.92827 0.92640 0.87901 0.75269 0.83797 0.84693 0.85032 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.03 60.07 0.54 1.19 16 2 N -0.52 -11.32 4.49 -245.83 -1.10 -12.42 16 3 C 0.19 4.92 4.72 -4.97 -0.02 4.89 16 4 C -0.51 -14.21 8.46 -34.44 -0.29 -14.50 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.04 0.63 5.45 -4.98 -0.03 0.60 16 13 C 0.52 7.89 7.29 -10.99 -0.08 7.81 16 14 O -0.49 -9.23 12.01 5.55 0.07 -9.17 16 15 N -0.68 -7.81 5.34 -9.87 -0.05 -7.87 16 16 C 0.17 2.05 6.28 -83.70 -0.53 1.52 16 17 C -0.12 -1.47 8.66 -39.39 -0.34 -1.81 16 18 C -0.09 -0.88 10.04 -39.61 -0.40 -1.27 16 19 C -0.13 -1.27 9.83 -39.51 -0.39 -1.66 16 20 C -0.02 -0.16 6.32 -39.52 -0.25 -0.41 16 21 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 22 C -0.15 -1.50 9.74 -39.36 -0.38 -1.88 16 23 H 0.06 1.26 5.88 -51.92 -0.31 0.95 16 24 H 0.08 1.68 6.76 -51.93 -0.35 1.33 16 25 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 26 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 27 H -0.01 -0.17 8.12 -51.93 -0.42 -0.60 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.06 0.82 8.12 -51.93 -0.42 0.39 16 30 H 0.10 1.54 7.93 -51.93 -0.41 1.12 16 31 H 0.41 3.30 8.82 -40.82 -0.36 2.94 16 32 H 0.14 2.05 6.43 -52.49 -0.34 1.72 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -31.76 313.94 -8.63 -40.39 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.22 Total: -0.44 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.26 Total: -4.05 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.42 Total: -45.89 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.76 -8.63 -40.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019834123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.905 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds