Wall clock time and date at job start Tue Mar 31 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.46631 * 2 1 4 4 C 1.46497 * 119.99981 * 269.99901 * 3 2 1 5 5 C 1.50700 * 109.47350 * 270.00119 * 4 3 2 6 6 H 1.08002 * 119.99768 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99687 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99599 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00323 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47163 * 90.00411 * 9 7 5 11 11 H 1.48504 * 109.47219 * 209.99838 * 9 7 5 12 12 H 1.48499 * 109.47156 * 330.00235 * 9 7 5 13 13 C 1.34780 * 119.99266 * 90.00425 * 3 2 1 14 14 O 1.21596 * 119.99177 * 179.97438 * 13 3 2 15 15 N 1.34769 * 120.00346 * 0.02562 * 13 3 2 16 16 C 1.40003 * 120.00050 * 185.29826 * 15 13 3 17 17 C 1.38861 * 120.05667 * 33.44272 * 16 15 13 18 18 C 1.38111 * 119.94154 * 180.23842 * 17 16 15 19 19 C 1.38383 * 120.05620 * 359.46335 * 18 17 16 20 20 Cl 1.73605 * 119.93986 * 180.30155 * 19 18 17 21 21 C 1.38378 * 120.11371 * 0.28878 * 19 18 17 22 22 C 1.38108 * 120.05749 * 359.96769 * 21 19 18 23 23 H 1.09006 * 109.46765 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47245 * 299.99634 * 1 2 3 25 25 H 1.09003 * 109.47550 * 59.99542 * 1 2 3 26 26 H 1.08997 * 109.47047 * 240.01007 * 2 1 3 27 27 H 1.08997 * 109.47126 * 120.00317 * 2 1 3 28 28 H 1.08994 * 109.47424 * 30.00796 * 4 3 2 29 29 H 1.09002 * 109.46478 * 150.00455 * 4 3 2 30 30 H 0.97000 * 119.99657 * 179.97438 * 8 7 5 31 31 H 0.96997 * 120.00404 * 5.29230 * 15 13 3 32 32 H 1.08000 * 120.02969 * 0.02562 * 17 16 15 33 33 H 1.07995 * 119.97134 * 179.75051 * 18 17 16 34 34 H 1.07995 * 119.97162 * 179.97438 * 21 19 18 35 35 H 1.08003 * 120.03245 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8353 -1.7038 6 1 4.3425 1.2305 -1.0962 7 6 4.1491 2.3908 -2.8775 8 7 5.3911 2.1838 -3.2574 9 14 3.0131 3.4373 -3.9279 10 1 3.1169 4.8573 -3.5057 11 1 3.4062 3.3153 -5.3548 12 1 1.6133 2.9716 -3.7584 13 6 2.2429 2.0165 1.1673 14 8 2.6485 3.1628 1.1673 15 7 2.0188 1.3809 2.3344 16 6 2.1451 2.0739 3.5444 17 6 1.8130 3.4204 3.6126 18 6 1.9431 4.1029 4.8062 19 6 2.3935 3.4432 5.9363 20 17 2.5485 4.3021 7.4370 21 6 2.7202 2.1001 5.8721 22 6 2.5969 1.4143 4.6797 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.5816 1.6879 -2.0283 29 1 2.0953 3.1411 -1.1382 30 1 5.7171 2.5744 -4.0833 31 1 1.7700 0.4434 2.3362 32 1 1.4565 3.9345 2.7322 33 1 1.6888 5.1512 4.8589 34 1 3.0719 1.5876 6.7553 35 1 2.8516 0.3659 4.6302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042247357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:12 Heat of formation + Delta-G solvation = -1.110734 kcal Electronic energy + Delta-G solvation = -19553.834359 eV Core-core repulsion = 16385.161960 eV Total energy + Delta-G solvation = -3168.672399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45651 -38.70712 -36.54868 -35.57458 -34.42804 -32.65615 -31.06862 -30.44038 -29.44427 -27.36966 -23.45048 -23.07233 -22.90781 -21.63793 -19.43295 -18.10791 -17.20271 -16.95149 -16.56145 -15.44785 -15.06827 -14.74171 -14.22746 -14.04041 -13.79351 -13.57548 -13.44320 -13.23179 -12.69312 -12.42420 -12.20420 -12.03241 -11.80425 -11.52075 -11.51306 -11.07041 -10.88533 -10.84366 -10.54426 -10.23676 -9.96433 -9.61159 -9.47567 -9.01100 -8.61521 -8.07557 -7.71266 -6.11219 -4.10445 1.15747 1.31200 2.14115 2.98286 3.27353 3.33045 3.35396 3.45910 3.88528 4.20618 4.36922 4.77669 4.86600 5.10135 5.20885 5.25817 5.36825 5.40890 5.49225 5.53653 5.81952 5.90724 5.99578 6.04169 6.23043 6.26876 6.30407 6.50435 6.55527 6.81707 7.01514 7.16499 7.39054 7.57669 8.34316 8.43923 8.91290 9.03705 9.48501 11.02216 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.003980 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.964733 B = 7032.673312 C = 7614.338581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.600 5.600 4 C 0.231 3.769 5 C -0.531 4.531 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.700 3.300 14 O -0.565 6.565 15 N -0.694 5.694 16 C 0.191 3.809 17 C -0.112 4.112 18 C -0.088 4.088 19 C -0.063 4.063 20 Cl -0.083 7.083 21 C -0.089 4.089 22 C -0.146 4.146 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.147 0.853 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 -3.708 15.933 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.335 5.335 4 C 0.110 3.890 5 C -0.570 4.570 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.402 3.598 14 O -0.441 6.441 15 N -0.343 5.343 16 C 0.093 3.907 17 C -0.133 4.133 18 C -0.107 4.107 19 C -0.090 4.090 20 Cl -0.054 7.054 21 C -0.108 4.108 22 C -0.168 4.168 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.340 -2.771 15.742 19.037 hybrid contribution -0.390 0.035 -0.564 0.687 sum -10.730 -2.735 15.177 18.787 Atomic orbital electron populations 1.22259 0.96496 1.01734 1.02505 1.21418 0.93568 0.83877 1.02938 1.47277 1.67064 1.13505 1.05620 1.19614 0.97346 0.93212 0.78781 1.21342 0.95378 1.33055 1.07196 0.90788 1.24849 0.95008 0.95776 0.97337 1.69900 1.15140 1.44897 1.23546 0.86853 0.81375 0.81663 0.79783 1.19855 1.21056 1.19061 1.15875 0.78878 0.84944 0.80075 1.90922 1.50930 1.16751 1.85510 1.43020 1.73346 1.14313 1.03657 1.17643 0.95675 0.92347 0.84989 1.21233 1.00309 0.93633 0.98077 1.20921 0.98798 1.00255 0.90715 1.20801 1.07494 0.93156 0.87549 1.98345 1.96743 1.77384 1.32964 1.20725 0.99763 0.92240 0.98075 1.20789 1.03171 1.00868 0.91922 0.91819 0.92941 0.91942 0.89180 0.92120 0.94957 0.94398 0.92526 0.75883 0.83578 0.84888 0.84915 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.11 1.52 5.94 -4.04 -0.02 1.50 16 3 N -0.60 -11.79 2.46 -180.80 -0.44 -12.23 16 4 C 0.23 5.47 4.23 -5.20 -0.02 5.45 16 5 C -0.53 -15.00 9.94 -34.44 -0.34 -15.34 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 9 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 13 C 0.70 13.97 8.02 -86.92 -0.70 13.27 16 14 O -0.57 -13.62 13.62 5.28 0.07 -13.55 16 15 N -0.69 -10.42 5.22 -14.21 -0.07 -10.50 16 16 C 0.19 2.76 6.28 -83.67 -0.53 2.24 16 17 C -0.11 -1.70 8.65 -39.40 -0.34 -2.04 16 18 C -0.09 -1.15 9.82 -39.57 -0.39 -1.54 16 19 C -0.06 -0.76 6.32 -39.48 -0.25 -1.01 16 20 Cl -0.08 -0.92 28.95 -51.86 -1.50 -2.42 16 21 C -0.09 -0.99 9.82 -39.58 -0.39 -1.38 16 22 C -0.15 -1.72 9.96 -39.40 -0.39 -2.11 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 27 H 0.06 0.71 6.29 -51.93 -0.33 0.38 16 28 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 29 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.40 4.70 6.51 -40.82 -0.27 4.44 16 32 H 0.15 2.48 6.43 -52.49 -0.34 2.15 16 33 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -33.21 313.36 -8.41 -41.62 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.20 Total: 3.05 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.09 Total: -0.58 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.26 Total: -49.40 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.07 Total: -13.55 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.21 -8.41 -41.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042247357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.508 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds