Wall clock time and date at job start Tue Mar 31 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47269 * 2 1 4 4 C 1.36935 * 119.99811 * 274.98015 * 3 2 1 5 5 H 1.08004 * 120.00007 * 24.12280 * 4 3 2 6 6 C 1.38814 * 119.99960 * 204.11363 * 4 3 2 7 7 N 1.31617 * 119.99664 * 5.05172 * 6 4 3 8 8 Si 1.86799 * 120.00143 * 185.04966 * 6 4 3 9 9 H 1.48504 * 109.47090 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47353 * 120.00036 * 8 6 4 11 11 H 1.48505 * 109.47129 * 240.00526 * 8 6 4 12 12 C 1.46495 * 119.99833 * 94.98136 * 3 2 1 13 13 C 1.50698 * 109.47111 * 90.00109 * 12 3 2 14 14 O 1.21291 * 120.00278 * 0.02562 * 13 12 3 15 15 N 1.34778 * 119.99942 * 179.97438 * 13 12 3 16 16 C 1.39983 * 119.99950 * 185.82470 * 15 13 12 17 17 C 1.38847 * 120.07425 * 24.72592 * 16 15 13 18 18 C 1.38119 * 119.94534 * 179.97438 * 17 16 15 19 19 C 1.38297 * 120.08371 * 359.97401 * 18 17 16 20 20 C 1.38250 * 120.15824 * 0.02562 * 19 18 17 21 21 C 1.38232 * 120.05654 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.04879 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47209 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46932 * 300.00432 * 1 2 3 25 25 H 1.08998 * 109.47052 * 59.99697 * 1 2 3 26 26 H 1.08998 * 109.47008 * 240.00116 * 2 1 3 27 27 H 1.09004 * 109.47377 * 120.00043 * 2 1 3 28 28 H 0.97003 * 119.99737 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47293 * 330.00060 * 12 3 2 30 30 H 1.09007 * 109.47000 * 209.99892 * 12 3 2 31 31 H 0.96999 * 120.00042 * 5.82944 * 15 13 12 32 32 H 1.08004 * 120.02844 * 359.96522 * 17 16 15 33 33 H 1.07992 * 119.95825 * 179.97438 * 18 17 16 34 34 H 1.08009 * 119.91802 * 180.02562 * 19 18 17 35 35 H 1.07997 * 119.97551 * 179.72704 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1495 2.0611 -1.1814 5 1 1.5608 1.7714 -2.0394 6 6 3.0390 3.1226 -1.2764 7 7 3.8276 3.4128 -0.2634 8 14 3.1167 4.1389 -2.8417 9 1 2.1354 3.6114 -3.8236 10 1 2.7934 5.5543 -2.5296 11 1 4.4835 4.0586 -3.4168 12 6 2.3664 2.0351 1.2639 13 6 3.8202 1.7875 1.5739 14 8 4.4990 1.1299 0.8136 15 7 4.3664 2.2975 2.6955 16 6 5.7418 2.1723 2.9237 17 6 6.6129 2.0129 1.8542 18 6 7.9695 1.8901 2.0824 19 6 8.4613 1.9262 3.3744 20 6 7.5975 2.0847 4.4422 21 6 6.2385 2.2072 4.2210 22 17 5.1540 2.4056 5.5619 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.4489 4.1548 -0.3296 29 1 1.7496 1.6284 2.0653 30 1 2.1906 3.1075 1.1787 31 1 3.8065 2.7513 3.3447 32 1 6.2299 1.9848 0.8448 33 1 8.6472 1.7657 1.2507 34 1 9.5227 1.8303 3.5498 35 1 7.9843 2.1081 5.4502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:29 Heat of formation + Delta-G solvation = 15.536467 kcal Electronic energy + Delta-G solvation = -20256.991488 eV Core-core repulsion = 17089.040965 eV Total energy + Delta-G solvation = -3167.950522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.67077 -37.78544 -36.16981 -35.55015 -33.64900 -31.89046 -30.34449 -29.76805 -28.75375 -26.50033 -23.74594 -22.64870 -21.99766 -20.59705 -19.35899 -17.52459 -16.74662 -15.98412 -15.85615 -15.20495 -14.48401 -14.10715 -13.88884 -13.70954 -13.57688 -13.18078 -12.85507 -12.76965 -12.39221 -11.79418 -11.62161 -11.39056 -11.21920 -11.09926 -11.02292 -10.87648 -10.65305 -10.51575 -10.29100 -9.99078 -9.85722 -9.64764 -8.80287 -8.51268 -8.28556 -7.39616 -6.81961 -5.88804 -3.29029 1.53568 1.74399 2.40193 3.34564 3.42106 3.43602 3.85150 3.98487 4.33897 4.54097 5.11907 5.31816 5.36848 5.38853 5.54255 5.78316 5.86933 5.96589 6.08099 6.24255 6.30254 6.33477 6.53089 6.56609 6.58259 6.80432 6.82729 6.86769 7.02161 7.10746 7.12947 7.58629 7.71907 8.24598 8.41670 9.12376 9.55562 9.77694 10.22787 11.22185 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.005975 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.445062 B = 4684.775999 C = 5531.084714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 N -0.575 5.575 4 C -0.243 4.243 5 H 0.074 0.926 6 C 0.005 3.995 7 N -0.909 5.909 8 Si 0.915 3.085 9 H -0.279 1.279 10 H -0.291 1.291 11 H -0.291 1.291 12 C 0.175 3.825 13 C 0.535 3.465 14 O -0.506 6.506 15 N -0.684 5.684 16 C 0.197 3.803 17 C -0.120 4.120 18 C -0.098 4.098 19 C -0.153 4.153 20 C -0.095 4.095 21 C -0.092 4.092 22 Cl -0.084 7.084 23 H 0.039 0.961 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.255 0.745 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.399 0.601 32 H 0.167 0.833 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.078 -1.538 9.537 10.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 N -0.295 5.295 4 C -0.373 4.373 5 H 0.091 0.909 6 C -0.192 4.192 7 N -0.556 5.556 8 Si 0.746 3.254 9 H -0.204 1.204 10 H -0.218 1.218 11 H -0.218 1.218 12 C 0.044 3.956 13 C 0.323 3.677 14 O -0.378 6.378 15 N -0.328 5.328 16 C 0.098 3.902 17 C -0.141 4.141 18 C -0.117 4.117 19 C -0.172 4.172 20 C -0.114 4.114 21 C -0.122 4.122 22 Cl -0.055 7.055 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.117 0.883 31 H 0.234 0.766 32 H 0.184 0.816 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.411 -1.890 8.951 9.763 hybrid contribution 0.028 0.999 -0.288 1.040 sum 3.439 -0.890 8.663 9.363 Atomic orbital electron populations 1.22308 0.99557 0.99202 1.01390 1.20777 0.91750 0.86411 0.99307 1.43714 1.74336 1.08976 1.02427 1.19263 1.17089 1.10725 0.90193 0.90853 1.24948 0.96009 1.00524 0.97748 1.69357 1.25210 1.30604 1.30420 0.86008 0.77362 0.79457 0.82563 1.20446 1.21807 1.21762 1.20415 0.88135 0.99890 0.87178 1.22267 0.92695 0.75599 0.77146 1.90443 1.62716 1.39142 1.45486 1.44280 1.04887 1.58645 1.24985 1.17760 0.85723 0.95953 0.90794 1.21760 0.91780 0.99657 1.00858 1.21173 0.95338 0.98447 0.96703 1.20885 0.99128 1.04831 0.92390 1.20675 0.90588 1.00588 0.99525 1.20661 0.91428 1.13485 0.86616 1.98314 1.64969 1.96296 1.45944 0.94240 0.93746 0.92985 0.93597 0.94528 0.93369 0.94687 0.88282 0.76614 0.81601 0.85958 0.86056 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.21 37.16 0.38 -2.49 16 2 C 0.14 2.99 6.39 -4.04 -0.03 2.96 16 3 N -0.57 -13.82 2.03 -174.61 -0.35 -14.17 16 4 C -0.24 -6.40 9.67 -15.06 -0.15 -6.55 16 5 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 6 C 0.00 0.12 5.22 -17.43 -0.09 0.03 16 7 N -0.91 -24.32 7.99 55.49 0.44 -23.87 16 8 Si 0.92 21.51 29.56 -169.99 -5.02 16.48 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 C 0.17 3.89 5.41 -5.20 -0.03 3.86 16 13 C 0.53 12.18 5.40 -10.99 -0.06 12.12 16 14 O -0.51 -13.32 12.76 5.55 0.07 -13.25 16 15 N -0.68 -13.27 5.19 -9.83 -0.05 -13.32 16 16 C 0.20 3.74 6.43 -83.64 -0.54 3.20 16 17 C -0.12 -2.38 8.72 -39.40 -0.34 -2.72 16 18 C -0.10 -1.58 10.04 -39.60 -0.40 -1.97 16 19 C -0.15 -2.13 10.04 -39.56 -0.40 -2.52 16 20 C -0.09 -1.34 9.82 -39.58 -0.39 -1.73 16 21 C -0.09 -1.49 6.34 -39.32 -0.25 -1.74 16 22 Cl -0.08 -1.18 27.78 -51.86 -1.44 -2.62 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 27 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 30 H 0.10 2.34 6.83 -51.93 -0.35 1.99 16 31 H 0.40 6.77 7.76 -40.82 -0.32 6.45 16 32 H 0.17 3.94 5.79 -52.48 -0.30 3.63 16 33 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -29.05 309.65 -8.29 -37.34 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.31 Total: 6.30 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -2.28 Total: 2.45 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.04 Total: -51.37 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.44 Total: -2.62 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.05 -8.29 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.872 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds