Wall clock time and date at job start Tue Mar 31 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.50702 * 109.47427 * 269.72511 * 3 2 1 5 5 H 1.07999 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99945 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99852 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00230 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47399 * 89.99911 * 8 6 4 10 10 H 1.48505 * 109.47222 * 210.00067 * 8 6 4 11 11 H 1.48500 * 109.47085 * 329.99867 * 8 6 4 12 12 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 13 13 O 1.21588 * 119.99858 * 180.02562 * 12 2 1 14 14 N 1.34777 * 119.99964 * 0.02562 * 12 2 1 15 15 C 1.39075 * 119.99626 * 180.02562 * 14 12 2 16 16 N 1.29891 * 125.65998 * 359.68646 * 15 14 12 17 17 N 1.26242 * 117.66442 * 179.80179 * 16 15 14 18 18 C 1.29504 * 116.58184 * 0.50333 * 17 16 15 19 19 C 1.50704 * 126.14617 * 179.77064 * 18 17 16 20 20 C 1.53000 * 117.49451 * 8.57989 * 19 18 17 21 21 C 1.53003 * 117.49768 * 299.95841 * 19 18 17 22 22 S 1.71308 * 125.65240 * 179.97438 * 15 14 12 23 23 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 24 24 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 25 25 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 26 26 H 1.09002 * 109.47192 * 29.72648 * 3 2 1 27 27 H 1.08996 * 109.47342 * 149.72358 * 3 2 1 28 28 H 0.97005 * 119.99840 * 180.02562 * 7 6 4 29 29 H 0.96996 * 119.99887 * 359.97438 * 14 12 2 30 30 H 1.09002 * 115.54933 * 154.28248 * 19 18 17 31 31 H 1.08997 * 117.50245 * 359.97438 * 20 19 18 32 32 H 1.09001 * 117.49361 * 145.02322 * 20 19 18 33 33 H 1.08999 * 117.48992 * 214.97840 * 21 19 18 34 34 H 1.08993 * 117.49606 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4546 1.7003 -1.4208 5 1 2.1068 1.0908 -2.2417 6 6 3.1331 2.8738 -1.6726 7 7 3.3571 3.2508 -2.9126 8 14 3.7342 3.9284 -0.2528 9 1 5.1062 3.5082 0.1298 10 1 3.7508 5.3543 -0.6676 11 1 2.8235 3.7612 0.9081 12 6 2.1388 -1.1673 0.0056 13 8 3.3547 -1.1673 0.0060 14 7 1.4648 -2.3344 0.0106 15 6 2.1602 -3.5389 0.0169 16 7 3.4527 -3.6670 0.0127 17 7 3.9258 -4.8374 0.0235 18 6 3.0691 -5.8086 0.0276 19 6 3.3938 -7.2803 0.0353 20 6 4.8563 -7.6799 0.2410 21 6 4.2088 -7.8300 -1.1372 22 16 1.4539 -5.0996 0.0244 23 1 -0.3634 0.0049 1.0276 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5096 26 1 1.6064 2.0295 0.5096 27 1 3.1477 1.1395 0.5181 28 1 3.8347 4.0763 -3.0898 29 1 0.4949 -2.3344 0.0106 30 1 2.6295 -7.9281 0.4646 31 1 5.5836 -6.8785 0.3703 32 1 5.0544 -8.5908 0.8058 33 1 3.9808 -8.8396 -1.4789 34 1 4.5097 -7.1273 -1.9141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049028706.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:03 Heat of formation + Delta-G solvation = 89.457499 kcal Electronic energy + Delta-G solvation = -19237.738112 eV Core-core repulsion = 16107.329504 eV Total energy + Delta-G solvation = -3130.408608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22659 -39.72931 -37.43922 -35.40139 -34.75146 -32.52485 -30.25117 -28.53120 -26.77852 -25.88359 -23.76612 -22.62333 -22.41492 -20.75340 -19.74371 -18.39351 -17.67065 -17.01545 -16.84992 -16.13315 -15.86369 -15.01684 -14.79678 -14.43044 -13.98019 -13.46329 -13.37775 -13.00191 -12.57337 -12.45635 -12.17317 -11.80926 -11.65939 -11.54895 -11.03262 -10.98879 -10.74661 -10.54798 -10.42785 -10.17890 -10.07916 -9.58244 -9.54726 -9.36789 -8.60001 -8.55863 -7.82438 -6.09772 -4.09378 0.51528 0.52593 1.18443 2.67165 2.70010 3.29554 3.35078 3.38198 3.59775 3.70607 3.94631 4.18921 4.38809 4.54714 4.60284 4.73048 4.92092 5.22864 5.28714 5.40044 5.44954 5.55260 5.64207 5.81315 5.94387 5.95395 6.16979 6.32411 6.75414 7.03511 7.24197 7.57024 8.17200 8.44228 8.77921 8.92245 8.99581 9.49403 11.03580 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029884 B = 0.003819 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.716258 B = 7330.637960 C = 7816.237813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.603 5.603 3 C 0.231 3.769 4 C -0.533 4.533 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.691 3.309 13 O -0.517 6.517 14 N -0.639 5.639 15 C 0.265 3.735 16 N -0.268 5.268 17 N -0.223 5.223 18 C 0.022 3.978 19 C -0.086 4.086 20 C -0.150 4.150 21 C -0.157 4.157 22 S 0.088 5.912 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.416 0.584 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 -20.870 7.637 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.339 5.339 3 C 0.111 3.889 4 C -0.571 4.571 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.390 3.610 13 O -0.386 6.386 14 N -0.295 5.295 15 C -0.107 4.107 16 N -0.112 5.112 17 N -0.058 5.058 18 C -0.260 4.260 19 C -0.108 4.108 20 C -0.189 4.189 21 C -0.196 4.196 22 S 0.328 5.672 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.255 0.745 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.039 -20.273 7.528 22.742 hybrid contribution -0.433 0.818 0.476 1.041 sum -7.472 -19.455 8.003 22.324 Atomic orbital electron populations 1.21687 0.80985 1.03015 1.00717 1.47157 1.05917 1.05281 1.75559 1.19684 0.92341 0.78299 0.98599 1.21322 1.37362 1.07258 0.91204 0.90744 1.24844 0.95101 0.97335 0.95650 1.69897 1.41177 1.23627 1.18693 0.86845 0.80284 0.79734 0.82773 1.19755 1.21022 1.19037 1.15937 0.85803 0.79653 0.79627 1.91069 1.10417 1.84198 1.52868 1.42516 1.09672 1.01552 1.75760 1.25664 0.92389 0.91608 1.01011 1.71618 1.06533 1.12846 1.20190 1.71377 1.29062 0.93148 1.12252 1.28795 0.88731 1.00186 1.08282 1.20273 0.97124 0.86692 1.06744 1.23074 0.93319 1.03481 0.99059 1.23108 1.02127 1.02327 0.92038 1.84498 1.11541 0.98393 1.72774 0.93191 0.89587 0.92997 0.94656 0.94198 0.92489 0.74479 0.85363 0.87208 0.87812 0.87717 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.20 59.84 0.61 1.74 16 2 N -0.60 -12.32 2.86 -188.75 -0.54 -12.86 16 3 C 0.23 5.63 4.23 -5.20 -0.02 5.61 16 4 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 5 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 8 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 12 C 0.69 14.86 8.24 -86.91 -0.72 14.14 16 13 O -0.52 -13.78 14.60 5.29 0.08 -13.71 16 14 N -0.64 -10.41 5.27 -17.32 -0.09 -10.50 16 15 C 0.26 4.43 8.14 -87.06 -0.71 3.72 16 16 N -0.27 -5.44 9.73 29.97 0.29 -5.15 16 17 N -0.22 -3.88 11.24 33.58 0.38 -3.51 16 18 C 0.02 0.29 7.33 -13.26 -0.10 0.19 16 19 C -0.09 -0.77 6.33 -91.77 -0.58 -1.35 16 20 C -0.15 -1.25 10.14 -26.73 -0.27 -1.52 16 21 C -0.16 -1.25 10.23 -26.73 -0.27 -1.52 16 22 S 0.09 1.00 23.31 -107.50 -2.51 -1.50 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.09 1.25 8.07 -51.93 -0.42 0.84 16 25 H 0.05 0.57 6.36 -51.93 -0.33 0.24 16 26 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 27 H 0.04 1.05 6.85 -51.93 -0.36 0.69 16 28 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.42 4.85 6.55 -40.82 -0.27 4.59 16 30 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 1.14 7.91 -51.93 -0.41 0.73 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -37.72 309.40 -7.98 -45.70 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -3.86 Total: -0.39 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -2.50 Total: 7.35 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.81 Total: -59.07 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.08 Total: -13.71 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -37.72 -7.98 -45.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049028706.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.160 kcal (2) G-P(sol) polarization free energy of solvation -37.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds