Wall clock time and date at job start Tue Mar 31 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.50702 * 109.47427 * 269.72511 * 3 2 1 5 5 H 1.07999 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99945 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99852 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00230 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47399 * 89.99911 * 8 6 4 10 10 H 1.48505 * 109.47222 * 210.00067 * 8 6 4 11 11 H 1.48500 * 109.47085 * 329.99867 * 8 6 4 12 12 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 13 13 O 1.21588 * 119.99858 * 180.02562 * 12 2 1 14 14 N 1.34777 * 119.99964 * 0.02562 * 12 2 1 15 15 C 1.39075 * 119.99626 * 180.02562 * 14 12 2 16 16 N 1.29891 * 125.65998 * 359.68646 * 15 14 12 17 17 N 1.26242 * 117.66442 * 179.80179 * 16 15 14 18 18 C 1.29504 * 116.58184 * 0.50333 * 17 16 15 19 19 C 1.50704 * 126.14617 * 179.77064 * 18 17 16 20 20 C 1.53000 * 117.49451 * 8.57989 * 19 18 17 21 21 C 1.53003 * 117.49768 * 299.95841 * 19 18 17 22 22 S 1.71308 * 125.65240 * 179.97438 * 15 14 12 23 23 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 24 24 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 25 25 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 26 26 H 1.09002 * 109.47192 * 29.72648 * 3 2 1 27 27 H 1.08996 * 109.47342 * 149.72358 * 3 2 1 28 28 H 0.97005 * 119.99840 * 180.02562 * 7 6 4 29 29 H 0.96996 * 119.99887 * 359.97438 * 14 12 2 30 30 H 1.09002 * 115.54933 * 154.28248 * 19 18 17 31 31 H 1.08997 * 117.50245 * 359.97438 * 20 19 18 32 32 H 1.09001 * 117.49361 * 145.02322 * 20 19 18 33 33 H 1.08999 * 117.48992 * 214.97840 * 21 19 18 34 34 H 1.08993 * 117.49606 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4546 1.7003 -1.4208 5 1 2.1068 1.0908 -2.2417 6 6 3.1331 2.8738 -1.6726 7 7 3.3571 3.2508 -2.9126 8 14 3.7342 3.9284 -0.2528 9 1 5.1062 3.5082 0.1298 10 1 3.7508 5.3543 -0.6676 11 1 2.8235 3.7612 0.9081 12 6 2.1388 -1.1673 0.0056 13 8 3.3547 -1.1673 0.0060 14 7 1.4648 -2.3344 0.0106 15 6 2.1602 -3.5389 0.0169 16 7 3.4527 -3.6670 0.0127 17 7 3.9258 -4.8374 0.0235 18 6 3.0691 -5.8086 0.0276 19 6 3.3938 -7.2803 0.0353 20 6 4.8563 -7.6799 0.2410 21 6 4.2088 -7.8300 -1.1372 22 16 1.4539 -5.0996 0.0244 23 1 -0.3634 0.0049 1.0276 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5096 26 1 1.6064 2.0295 0.5096 27 1 3.1477 1.1395 0.5181 28 1 3.8347 4.0763 -3.0898 29 1 0.4949 -2.3344 0.0106 30 1 2.6295 -7.9281 0.4646 31 1 5.5836 -6.8785 0.3703 32 1 5.0544 -8.5908 0.8058 33 1 3.9808 -8.8396 -1.4789 34 1 4.5097 -7.1273 -1.9141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049028706.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:03 Heat of formation + Delta-G solvation = 61.317658 kcal Electronic energy + Delta-G solvation = -19238.958347 eV Core-core repulsion = 16107.329504 eV Total energy + Delta-G solvation = -3131.628843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.47326 -41.22750 -38.21483 -36.94102 -36.32595 -34.66748 -31.55932 -30.32043 -27.97817 -27.26079 -25.22347 -23.90355 -23.25622 -22.10420 -20.96444 -19.71936 -19.18297 -18.98087 -18.06831 -17.33417 -16.94870 -16.72006 -16.30068 -15.82825 -15.28173 -15.06547 -14.50010 -14.47836 -14.21300 -13.73603 -13.35524 -13.30537 -12.97059 -12.82074 -12.46549 -12.37875 -12.05677 -11.89176 -11.78305 -11.72343 -11.59343 -11.20268 -10.84821 -10.82357 -10.49719 -9.90099 -9.41653 -8.35321 -6.41055 -0.58575 -0.55890 0.09275 1.30771 1.38079 1.39394 1.45418 1.46469 2.13491 2.30551 2.65172 2.90316 2.99601 3.19935 3.71737 3.86081 3.93596 4.07191 4.20134 4.52882 4.56627 4.67532 4.81926 4.82877 4.87909 4.92273 4.97730 5.15870 5.30197 5.40026 5.41924 5.63572 6.21454 6.60084 6.70068 7.19304 7.36745 7.68664 8.81863 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029884 B = 0.003819 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.716258 B = 7330.637960 C = 7816.237813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.609 5.609 3 C 0.240 3.760 4 C -0.540 4.540 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.231 1.231 12 C 0.688 3.312 13 O -0.582 6.582 14 N -0.622 5.622 15 C 0.221 3.779 16 N -0.329 5.329 17 N -0.271 5.271 18 C 0.024 3.976 19 C -0.096 4.096 20 C -0.152 4.152 21 C -0.147 4.147 22 S 0.208 5.792 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.018 0.982 28 H 0.269 0.731 29 H 0.438 0.562 30 H 0.168 0.832 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.753 -23.121 9.606 27.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.345 5.345 3 C 0.118 3.882 4 C -0.578 4.578 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.154 1.154 12 C 0.387 3.613 13 O -0.456 6.456 14 N -0.281 5.281 15 C -0.150 4.150 16 N -0.172 5.172 17 N -0.106 5.106 18 C -0.258 4.258 19 C -0.119 4.119 20 C -0.191 4.191 21 C -0.186 4.186 22 S 0.450 5.550 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.281 0.719 30 H 0.186 0.814 31 H 0.098 0.902 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.635 -22.578 9.508 26.325 hybrid contribution 0.274 1.253 -0.232 1.304 sum -9.361 -21.325 9.276 25.068 Atomic orbital electron populations 1.22076 0.76993 1.04406 1.03644 1.47129 1.08349 1.03859 1.75151 1.19356 0.92685 0.80784 0.95403 1.21572 1.37103 1.06718 0.92434 0.95516 1.25873 0.95140 0.99025 0.98747 1.70056 1.42537 1.24592 1.21412 0.85697 0.79547 0.77682 0.79878 1.20680 1.19852 1.15381 1.16156 0.85263 0.80976 0.78939 1.91018 1.13414 1.85520 1.55664 1.41972 1.10322 1.00263 1.75495 1.25946 0.92925 0.93689 1.02482 1.71553 1.09259 1.15060 1.21352 1.71351 1.30550 0.93318 1.15408 1.29744 0.89998 1.01609 1.04423 1.20744 0.98585 0.84556 1.08000 1.23126 0.92213 1.03766 0.99981 1.23183 1.01036 1.03326 0.91096 1.83961 1.08024 0.92754 1.70275 0.89287 0.90169 0.89828 0.91692 0.96340 0.92233 0.71890 0.81425 0.90220 0.84635 0.84214 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.82 10.20 127.77 1.30 3.12 16 2 N -0.61 -24.83 2.86 -869.33 -2.48 -27.32 16 3 C 0.24 11.76 4.23 85.64 0.36 12.12 16 4 C -0.54 -32.28 9.94 25.60 0.25 -32.03 16 5 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 6 C 0.01 0.61 5.47 84.65 0.46 1.07 16 7 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 8 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 9 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.23 -9.58 6.54 99.48 0.65 -8.93 16 12 C 0.69 30.27 8.24 179.05 1.48 31.75 16 13 O -0.58 -32.81 14.60 -3.99 -0.06 -32.87 16 14 N -0.62 -19.98 5.27 -326.96 -1.72 -21.71 16 15 C 0.22 7.37 8.14 179.10 1.46 8.82 16 16 N -0.33 -13.91 9.73 -59.10 -0.58 -14.49 16 17 N -0.27 -9.75 11.24 -47.68 -0.54 -10.29 16 18 C 0.02 0.60 7.33 88.45 0.65 1.25 16 19 C -0.10 -1.45 6.33 -11.54 -0.07 -1.52 16 20 C -0.15 -2.25 10.14 30.60 0.31 -1.94 16 21 C -0.15 -1.99 10.23 30.60 0.31 -1.68 16 22 S 0.21 4.19 23.31 -56.49 -1.32 2.87 16 23 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 25 H 0.08 1.59 6.36 -2.38 -0.02 1.58 16 26 H 0.07 2.80 7.13 -2.39 -0.02 2.78 16 27 H 0.02 0.99 6.85 -2.39 -0.02 0.97 16 28 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 29 H 0.44 9.25 6.55 -92.71 -0.61 8.64 16 30 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.71 7.91 -2.39 -0.02 1.69 16 32 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -91.41 309.40 2.48 -88.93 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.48 Total: 7.65 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 6.52 Total: 20.97 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -5.02 Total: -134.44 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.06 Total: -32.87 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.32 Total: 2.87 kcal Total: -91.41 2.48 -88.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049028706.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.243 kcal (2) G-P(sol) polarization free energy of solvation -91.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds