Wall clock time and date at job start Tue Mar 31 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47018 * 2 1 4 4 N 1.46901 * 109.47378 * 240.00309 * 2 1 3 5 5 C 1.46898 * 110.99822 * 84.99833 * 4 2 1 6 6 C 1.50701 * 109.46979 * 180.02562 * 5 4 2 7 7 O 1.21297 * 119.99856 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00413 * 179.97438 * 6 5 4 9 9 C 1.37101 * 120.00498 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00124 * 0.02562 * 9 8 6 11 11 C 1.38945 * 120.00085 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00456 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00022 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47299 * 90.00011 * 13 11 9 15 15 H 1.48498 * 109.47568 * 210.00075 * 13 11 9 16 16 H 1.48496 * 109.47188 * 330.00127 * 13 11 9 17 17 C 1.50698 * 109.47173 * 120.00126 * 2 1 3 18 18 C 1.38236 * 120.00579 * 100.00046 * 17 2 1 19 19 C 1.38220 * 120.01151 * 179.97438 * 18 17 2 20 20 C 1.38265 * 120.02927 * 0.02562 * 19 18 17 21 21 C 1.38196 * 120.01248 * 359.97438 * 20 19 18 22 22 C 1.38334 * 120.00580 * 279.97863 * 17 2 1 23 23 Cl 1.73595 * 120.01372 * 0.04429 * 22 17 2 24 24 H 1.08996 * 109.47597 * 299.99701 * 1 2 3 25 25 H 1.09001 * 109.47453 * 60.00294 * 1 2 3 26 26 H 1.09006 * 109.46940 * 179.97438 * 1 2 3 27 27 H 1.00901 * 110.99855 * 208.95110 * 4 2 1 28 28 H 1.08995 * 109.47224 * 299.99612 * 5 4 2 29 29 H 1.09004 * 109.47482 * 60.00456 * 5 4 2 30 30 H 0.97005 * 119.99837 * 0.02562 * 8 6 5 31 31 H 0.96996 * 120.00562 * 179.97438 * 12 11 9 32 32 H 1.07991 * 119.99550 * 0.02562 * 18 17 2 33 33 H 1.07998 * 119.98921 * 180.02562 * 19 18 17 34 34 H 1.07999 * 119.99413 * 179.70049 * 20 19 18 35 35 H 1.08002 * 120.00655 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3468 6 6 2.5874 -0.5216 -3.5560 7 8 2.8669 -1.6988 -3.4704 8 7 2.7273 0.1204 -4.7327 9 6 3.1872 -0.5566 -5.8326 10 1 3.4369 -1.6045 -5.7563 11 6 3.3319 0.1055 -7.0455 12 7 3.0276 1.3805 -7.1387 13 14 3.9578 -0.8172 -8.5444 14 1 2.8085 -1.3994 -9.2829 15 1 4.6926 0.1200 -9.4315 16 1 4.8699 -1.9057 -8.1104 17 6 2.0323 -0.7104 1.2304 18 6 2.4587 -2.0226 1.1454 19 6 2.9200 -2.6742 2.2737 20 6 2.9547 -2.0142 3.4882 21 6 2.5286 -0.7024 3.5745 22 6 2.0672 -0.0494 2.4451 23 17 1.5313 1.5982 2.5528 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9173 -1.1204 -1.0287 28 1 1.0871 0.6164 -2.5525 29 1 2.7588 1.0464 -2.1182 30 1 2.5034 1.0617 -4.8012 31 1 3.1290 1.8428 -7.9853 32 1 2.4322 -2.5385 0.1970 33 1 3.2534 -3.6992 2.2068 34 1 3.3107 -2.5254 4.3705 35 1 2.5554 -0.1871 4.5233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049508767.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:34 Heat of formation + Delta-G solvation = -39.274986 kcal Electronic energy + Delta-G solvation = -19113.706729 eV Core-core repulsion = 15943.379404 eV Total energy + Delta-G solvation = -3170.327325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78871 -40.02127 -37.46233 -37.32904 -35.91971 -33.34288 -32.74550 -31.70382 -30.10749 -28.17271 -26.06010 -24.33689 -23.39029 -21.37594 -21.11549 -19.93509 -18.52275 -17.59393 -16.98849 -16.84102 -16.38236 -16.13385 -15.82583 -15.29054 -15.18481 -14.89549 -14.69944 -14.25808 -13.99062 -13.50209 -13.49242 -13.12137 -12.98189 -12.87990 -12.60282 -12.47407 -12.41518 -12.36084 -12.11762 -11.99358 -11.51662 -11.49452 -10.37015 -10.02194 -9.86354 -9.65460 -9.41356 -8.46807 -5.95808 0.18022 0.31120 1.15675 1.38224 1.42047 1.54903 2.03848 2.28684 2.67149 2.83125 3.20271 3.46947 3.56795 3.92349 4.09348 4.22055 4.27563 4.38034 4.41293 4.45646 4.52874 4.56553 4.71613 4.84525 4.93054 5.02044 5.26951 5.31496 5.37265 5.41124 5.50347 5.86284 5.89957 6.07901 6.31169 6.59196 7.11844 7.55094 8.09935 8.70659 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.003378 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.948872 B = 8285.772385 C = 8882.037814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.124 3.876 3 H 0.060 0.940 4 N -0.671 5.671 5 C 0.063 3.937 6 C 0.440 3.560 7 O -0.621 6.621 8 N -0.572 5.572 9 C -0.334 4.334 10 H 0.080 0.920 11 C -0.013 4.013 12 N -0.921 5.921 13 Si 0.994 3.006 14 H -0.271 1.271 15 H -0.271 1.271 16 H -0.272 1.272 17 C -0.090 4.090 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.107 4.107 21 C -0.113 4.113 22 C -0.043 4.043 23 Cl -0.070 7.070 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.346 0.654 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.396 0.604 31 H 0.278 0.722 32 H 0.130 0.870 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 -0.308 21.582 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.014 3.986 3 H 0.078 0.922 4 N -0.305 5.305 5 C -0.069 4.069 6 C 0.227 3.773 7 O -0.507 6.507 8 N -0.209 5.209 9 C -0.464 4.464 10 H 0.098 0.902 11 C -0.213 4.213 12 N -0.562 5.562 13 Si 0.817 3.183 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.197 1.197 17 C -0.091 4.091 18 C -0.131 4.131 19 C -0.133 4.133 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.070 4.070 23 Cl -0.042 7.042 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.166 0.834 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.230 0.770 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.166 0.834 34 H 0.179 0.821 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.821 -1.039 21.308 21.519 hybrid contribution 0.820 0.887 -0.886 1.498 sum -2.001 -0.152 20.422 20.521 Atomic orbital electron populations 1.21730 0.92583 1.02328 1.02140 1.20473 0.96850 0.95320 0.85917 0.92209 1.60298 1.34622 1.32303 1.03242 1.21590 1.02370 0.93721 0.89207 1.20752 0.83273 0.87969 0.85303 1.90483 1.56636 1.18031 1.85577 1.41921 1.58239 1.12583 1.08191 1.19682 1.42156 0.96002 0.88542 0.90215 1.26052 0.97199 0.96609 1.01396 1.69673 1.48597 1.09732 1.28152 0.84919 0.78434 0.77830 0.77104 1.19646 1.19543 1.19665 1.19818 1.00443 0.95167 0.93704 1.21230 0.98145 0.93489 1.00194 1.21586 0.98131 1.01317 0.92267 1.21499 0.98458 0.93675 0.98824 1.21328 0.98739 0.95562 0.97561 1.20904 1.04198 0.86703 0.95231 1.98358 1.88756 1.18720 1.98319 0.91121 0.92126 0.92607 0.83400 0.87732 0.91812 0.76996 0.91281 0.85170 0.83392 0.82053 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.35 71.98 0.67 -2.53 16 2 C 0.12 3.28 2.28 44.17 0.10 3.38 16 3 H 0.06 1.57 7.01 -2.39 -0.02 1.55 16 4 N -0.67 -22.03 5.23 -499.48 -2.61 -24.64 16 5 C 0.06 2.26 5.96 85.56 0.51 2.77 16 6 C 0.44 21.22 7.82 87.66 0.69 21.91 16 7 O -0.62 -34.56 15.78 -3.08 -0.05 -34.61 16 8 N -0.57 -29.73 5.29 -306.99 -1.62 -31.35 16 9 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 10 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 11 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 12 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 13 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 C -0.09 -2.20 4.99 -19.84 -0.10 -2.30 16 18 C -0.11 -2.68 8.87 22.26 0.20 -2.48 16 19 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 20 C -0.11 -1.59 10.05 22.27 0.22 -1.37 16 21 C -0.11 -1.92 9.83 22.29 0.22 -1.70 16 22 C -0.04 -0.93 6.31 22.33 0.14 -0.79 16 23 Cl -0.07 -1.44 26.63 -2.72 -0.07 -1.51 16 24 H 0.07 1.53 7.26 -2.39 -0.02 1.51 16 25 H 0.06 1.48 7.45 -2.39 -0.02 1.47 16 26 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.35 11.91 6.68 -89.69 -0.60 11.31 16 28 H 0.10 3.38 7.44 -2.39 -0.02 3.37 16 29 H 0.06 2.04 8.06 -2.38 -0.02 2.02 16 30 H 0.40 19.59 7.90 -92.70 -0.73 18.85 16 31 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.13 3.53 6.70 -2.92 -0.02 3.51 16 33 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -66.01 313.82 1.91 -64.10 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -0.20 Total: 36.16 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 4.16 Total: -3.53 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -3.95 Total: -105.74 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.05 Total: -34.61 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.07 Total: -1.51 kcal Total: -66.01 1.91 -64.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049508767.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.821 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds