Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 5 5 C 1.46902 * 110.99800 * 274.99934 * 4 2 1 6 6 C 1.50706 * 109.46577 * 180.02562 * 5 4 2 7 7 O 1.21288 * 120.00224 * 359.72334 * 6 5 4 8 8 N 1.34777 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.37095 * 119.99970 * 179.97438 * 8 6 5 10 10 H 1.07999 * 119.99992 * 0.02562 * 9 8 6 11 11 C 1.38956 * 120.00025 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99899 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00157 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47086 * 59.99766 * 13 11 9 15 15 H 1.48494 * 109.47285 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46819 * 300.00061 * 13 11 9 17 17 C 1.50695 * 109.47212 * 240.00355 * 2 1 3 18 18 C 1.38242 * 120.00589 * 265.00151 * 17 2 1 19 19 C 1.38218 * 120.01658 * 180.02562 * 18 17 2 20 20 C 1.38261 * 120.02371 * 359.97438 * 19 18 17 21 21 C 1.38197 * 120.01598 * 359.97438 * 20 19 18 22 22 C 1.38329 * 120.01274 * 84.72599 * 17 2 1 23 23 Cl 1.73608 * 120.00874 * 359.97361 * 22 17 2 24 24 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 25 25 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 27 27 H 1.00891 * 110.99988 * 38.95349 * 4 2 1 28 28 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 29 29 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 30 30 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 31 31 H 0.97005 * 120.00019 * 180.02562 * 12 11 9 32 32 H 1.08006 * 119.99159 * 359.97438 * 18 17 2 33 33 H 1.07994 * 119.98759 * 179.97438 * 19 18 17 34 34 H 1.08007 * 119.99464 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.00934 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5886 -0.5215 3.5557 7 8 2.8645 -1.6996 3.4711 8 7 2.7297 0.1208 4.7321 9 6 3.1896 -0.5563 5.8320 10 1 3.4392 -1.6043 5.7556 11 6 3.3347 0.1058 7.0450 12 7 3.0305 1.3809 7.1381 13 14 3.9620 -0.8165 8.5434 14 1 5.3182 -1.3525 8.2628 15 1 4.0249 0.1083 9.7035 16 1 3.0409 -1.9389 8.8551 17 6 2.0323 -0.7103 -1.2305 18 6 2.3611 -2.0516 -1.1686 19 6 2.8224 -2.7032 -2.2969 20 6 2.9548 -2.0141 -3.4882 21 6 2.6254 -0.6734 -3.5516 22 6 2.1592 -0.0218 -2.4235 23 17 1.7390 1.6608 -2.5039 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.4496 -1.4978 1.4101 28 1 1.0871 0.6163 2.5526 29 1 2.7589 1.0462 2.1183 30 1 2.5052 1.0619 4.8009 31 1 3.1321 1.8432 7.9848 32 1 2.2583 -2.5903 -0.2382 33 1 3.0795 -3.7510 -2.2480 34 1 3.3156 -2.5236 -4.3695 35 1 2.7284 -0.1354 -4.4823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049508769.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = -21.242845 kcal Electronic energy + Delta-G solvation = -19103.972748 eV Core-core repulsion = 15934.427355 eV Total energy + Delta-G solvation = -3169.545393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.72336 -38.25677 -36.51498 -36.24395 -33.90586 -31.71988 -31.13648 -30.78813 -29.06422 -26.39585 -24.28875 -23.48982 -22.44187 -20.57236 -19.31037 -17.93942 -17.25909 -16.11754 -15.86066 -15.24441 -15.14728 -14.53289 -14.21035 -14.05971 -13.82415 -13.65574 -13.60028 -13.17682 -12.68780 -12.30351 -12.12829 -11.74052 -11.61071 -11.55134 -11.50473 -11.41357 -11.09784 -11.01168 -10.60729 -10.43829 -10.20739 -9.49450 -8.92509 -8.73841 -8.48679 -8.06941 -7.95402 -6.40981 -3.81859 1.09324 1.24128 2.06330 3.20658 3.26339 3.30671 3.57452 3.91501 4.06005 4.28448 4.63524 4.79842 4.93696 5.08147 5.14821 5.21134 5.25488 5.28564 5.39353 5.57177 5.68284 5.69866 5.83560 5.92631 6.00080 6.08170 6.17342 6.24705 6.37562 6.42535 6.76234 7.20250 7.55593 7.62041 8.06616 8.61833 9.18303 9.54936 10.06265 10.76682 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029863 B = 0.003387 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.393525 B = 8264.456534 C = 8833.072253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.117 3.883 3 H 0.093 0.907 4 N -0.660 5.660 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.102 0.898 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.274 1.274 17 C -0.055 4.055 18 C -0.081 4.081 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.035 4.035 23 Cl -0.075 7.075 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.350 0.650 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.392 0.608 31 H 0.272 0.728 32 H 0.141 0.859 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.393 -0.813 -19.612 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.006 3.994 3 H 0.111 0.889 4 N -0.292 5.292 5 C -0.082 4.082 6 C 0.227 3.773 7 O -0.468 6.468 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.057 4.057 18 C -0.099 4.099 19 C -0.135 4.135 20 C -0.135 4.135 21 C -0.134 4.134 22 C -0.062 4.062 23 Cl -0.046 7.046 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.170 0.830 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.226 0.774 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.568 -1.240 -19.635 19.995 hybrid contribution -0.732 0.537 1.014 1.361 sum -4.299 -0.703 -18.621 19.124 Atomic orbital electron populations 1.22470 0.95942 1.02553 1.02691 1.20487 0.92889 0.97760 0.88242 0.88869 1.60171 1.57472 1.09162 1.02427 1.21704 1.00082 0.95704 0.90688 1.19778 0.85163 0.88223 0.84144 1.90513 1.55499 1.16179 1.84633 1.41849 1.57720 1.12477 1.07909 1.19656 1.40118 0.96430 0.86771 0.87969 1.25261 0.97625 0.95769 0.99245 1.69606 1.48578 1.08858 1.27278 0.85918 0.79468 0.78813 0.80022 1.19869 1.20986 1.19920 1.19706 0.98693 0.94229 0.93028 1.21113 0.96624 0.93295 0.98903 1.21301 0.99095 1.00393 0.92750 1.21069 1.00419 0.93675 0.98344 1.20943 1.00234 0.95001 0.97233 1.20773 1.04601 0.85446 0.95398 1.98354 1.92000 1.15801 1.98439 0.91779 0.92133 0.91827 0.82962 0.93617 0.89529 0.77446 0.91817 0.84154 0.85510 0.85498 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.14 37.16 0.34 -1.69 16 2 C 0.12 1.54 2.30 -68.86 -0.16 1.38 16 3 H 0.09 1.26 6.80 -51.93 -0.35 0.90 16 4 N -0.66 -10.60 4.88 -109.21 -0.53 -11.13 16 5 C 0.05 0.89 5.97 -4.97 -0.03 0.87 16 6 C 0.44 10.40 7.82 -10.98 -0.09 10.31 16 7 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 8 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 9 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 10 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 13 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C -0.06 -0.71 5.06 -104.59 -0.53 -1.24 16 18 C -0.08 -1.01 9.32 -39.59 -0.37 -1.38 16 19 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 20 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 21 C -0.12 -1.18 9.83 -39.55 -0.39 -1.57 16 22 C -0.04 -0.42 6.31 -39.50 -0.25 -0.67 16 23 Cl -0.07 -0.83 27.13 -51.86 -1.41 -2.24 16 24 H 0.06 0.68 7.86 -51.93 -0.41 0.27 16 25 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 27 H 0.35 5.66 7.60 -39.30 -0.30 5.36 16 28 H 0.05 0.72 7.44 -51.93 -0.39 0.34 16 29 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 30 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.14 1.84 6.89 -52.48 -0.36 1.48 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -30.65 315.79 -8.09 -38.74 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -4.14 Total: 12.82 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.51 Total: -5.16 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.13 Total: -49.37 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.09 Total: -15.63 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.41 Total: -2.24 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.65 -8.09 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049508769.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.502 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds