Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 O 1.21292 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.37102 * 120.00095 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99386 * 359.97438 * 9 8 6 11 11 C 1.38941 * 120.00393 * 179.97438 * 9 8 6 12 12 N 1.31408 * 120.00397 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00009 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47309 * 89.99758 * 13 11 9 15 15 H 1.48496 * 109.47518 * 209.99884 * 13 11 9 16 16 H 1.48503 * 109.47255 * 329.99853 * 13 11 9 17 17 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 18 18 C 1.38243 * 119.98270 * 79.72894 * 17 2 1 19 19 C 1.38214 * 120.00830 * 179.72846 * 18 17 2 20 20 C 1.38354 * 119.98874 * 0.54209 * 19 18 17 21 21 Cl 1.73594 * 120.01533 * 179.70691 * 20 19 18 22 22 C 1.38356 * 119.97143 * 359.73055 * 20 19 18 23 23 C 1.38220 * 119.98798 * 359.97438 * 22 20 19 24 24 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 25 25 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 26 26 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 28 28 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 29 29 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 30 30 H 0.96997 * 120.00713 * 359.97438 * 8 6 5 31 31 H 0.97001 * 120.00755 * 180.02562 * 12 11 9 32 32 H 1.07998 * 119.99392 * 0.02562 * 18 17 2 33 33 H 1.08001 * 120.00928 * 180.27225 * 19 18 17 34 34 H 1.07998 * 120.00559 * 179.97438 * 22 20 19 35 35 H 1.07991 * 119.99660 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 8 2.8677 -1.6987 -3.4702 8 7 2.7283 0.1206 -4.7325 9 6 3.1881 -0.5565 -5.8324 10 1 3.4377 -1.6045 -5.7560 11 6 3.3329 0.1055 -7.0454 12 7 3.7740 -0.5433 -8.0995 13 14 2.9004 1.9179 -7.1777 14 1 4.1005 2.7369 -6.8709 15 1 2.4364 2.2168 -8.5563 16 1 1.8204 2.2410 -6.2110 17 6 2.0324 -0.7104 1.2305 18 6 2.0613 -2.0921 1.2671 19 6 2.5272 -2.7441 2.3932 20 6 2.9540 -2.0140 3.4881 21 17 3.5321 -2.8323 4.9057 22 6 2.9195 -0.6313 3.4530 23 6 2.4591 0.0198 2.3240 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4495 -1.4979 -1.4101 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0462 -2.1182 30 1 2.5044 1.0619 -4.8011 31 1 3.8755 -0.0810 -8.9463 32 1 1.7244 -2.6619 0.4138 33 1 2.5540 -3.8234 2.4201 34 1 3.2521 -0.0608 4.3075 35 1 2.4325 1.0990 2.2962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049525536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = -16.896249 kcal Electronic energy + Delta-G solvation = -18858.563950 eV Core-core repulsion = 15689.207039 eV Total energy + Delta-G solvation = -3169.356910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.77523 -38.47575 -36.93776 -35.99107 -33.97503 -31.81815 -31.51269 -31.15608 -29.05049 -26.59377 -24.19408 -23.46107 -22.65943 -20.61985 -19.43464 -18.45020 -17.34072 -16.20313 -15.94060 -15.29352 -15.19038 -14.83324 -14.33485 -14.14495 -13.76496 -13.58522 -13.50781 -13.24421 -12.94018 -12.68107 -12.36757 -12.13287 -11.90491 -11.77180 -11.48605 -11.31870 -11.17608 -11.09061 -10.90122 -10.61113 -9.99009 -9.58862 -9.14676 -8.70306 -8.63712 -8.21489 -8.16675 -6.32322 -3.83940 1.02149 1.19114 1.98819 3.00693 3.05651 3.13837 3.48481 3.72033 4.04504 4.09466 4.59054 4.67061 4.74972 4.83984 5.01042 5.06905 5.20176 5.24602 5.30727 5.47434 5.52374 5.59821 5.65455 5.79547 5.83093 5.89682 5.95067 6.08765 6.16142 6.42630 6.67955 7.05237 7.49504 7.56729 8.13045 8.58190 8.93613 9.40929 9.80885 10.80808 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034573 B = 0.002966 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.695395 B = 9436.894386 C = 9806.324490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 H 0.088 0.912 4 N -0.660 5.660 5 C 0.048 3.952 6 C 0.450 3.550 7 O -0.564 6.564 8 N -0.590 5.590 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.041 3.959 12 N -0.881 5.881 13 Si 0.880 3.120 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.270 1.270 17 C -0.056 4.056 18 C -0.082 4.082 19 C -0.110 4.110 20 C -0.040 4.040 21 Cl -0.080 7.080 22 C -0.113 4.113 23 C -0.105 4.105 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.352 0.648 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.370 0.630 31 H 0.273 0.727 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 4.081 22.218 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.009 3.991 3 H 0.107 0.893 4 N -0.293 5.293 5 C -0.085 4.085 6 C 0.235 3.765 7 O -0.446 6.446 8 N -0.230 5.230 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.521 5.521 13 Si 0.707 3.293 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.057 4.057 18 C -0.100 4.100 19 C -0.129 4.129 20 C -0.067 4.067 21 Cl -0.052 7.052 22 C -0.131 4.131 23 C -0.124 4.124 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.172 0.828 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.203 0.797 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.447 3.276 22.302 23.190 hybrid contribution -1.101 1.500 -0.427 1.909 sum -6.548 4.776 21.875 23.328 Atomic orbital electron populations 1.22517 0.96135 1.02746 1.02460 1.20503 0.92699 0.97480 0.88465 0.89343 1.60179 1.57759 1.09081 1.02248 1.21744 1.00061 0.95836 0.90836 1.19687 0.84782 0.88255 0.83737 1.90569 1.53782 1.16020 1.84230 1.42203 1.60108 1.11112 1.09563 1.19431 1.40145 0.98032 0.85779 0.86280 1.25039 0.97478 0.98416 0.95239 1.69618 1.45085 1.36557 1.00860 0.86666 0.79002 0.85157 0.78510 1.19588 1.20201 1.19536 1.19900 0.97360 0.93866 0.94567 1.20977 0.97939 0.94078 0.97034 1.21071 0.99263 1.00414 0.92138 1.20911 1.03532 0.92836 0.89419 1.98359 1.87591 1.79406 1.39809 1.20951 1.00839 0.92211 0.99139 1.20939 0.99006 0.99993 0.92472 0.91864 0.91981 0.91993 0.82766 0.93572 0.89379 0.79696 0.91597 0.84799 0.85061 0.85223 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.14 37.16 0.34 -1.31 16 2 C 0.12 1.30 2.79 -68.86 -0.19 1.10 16 3 H 0.09 0.89 7.66 -51.93 -0.40 0.49 16 4 N -0.66 -9.61 5.33 -109.21 -0.58 -10.19 16 5 C 0.05 0.75 5.97 -4.98 -0.03 0.72 16 6 C 0.45 9.99 7.82 -10.99 -0.09 9.90 16 7 O -0.56 -14.92 15.78 5.55 0.09 -14.83 16 8 N -0.59 -13.86 5.09 -10.96 -0.06 -13.91 16 9 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 10 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 11 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 12 N -0.88 -25.67 13.96 55.49 0.77 -24.89 16 13 Si 0.88 19.16 27.73 -169.99 -4.71 14.45 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 17 C -0.06 -0.62 4.95 -104.62 -0.52 -1.14 16 18 C -0.08 -0.94 9.32 -39.59 -0.37 -1.31 16 19 C -0.11 -1.21 9.83 -39.55 -0.39 -1.60 16 20 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 21 Cl -0.08 -0.81 28.96 -51.86 -1.50 -2.31 16 22 C -0.11 -1.11 9.83 -39.54 -0.39 -1.50 16 23 C -0.11 -1.03 9.67 -39.59 -0.38 -1.41 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 27 H 0.35 5.26 7.52 -39.29 -0.30 4.97 16 28 H 0.05 0.62 7.44 -51.93 -0.39 0.24 16 29 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 30 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.13 1.53 7.25 -52.49 -0.38 1.15 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 0.98 8.04 -52.49 -0.42 0.55 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -32.03 316.14 -7.91 -39.94 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.17 Total: 11.91 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.51 Total: -4.93 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.14 Total: -48.99 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.09 Total: -14.83 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.03 -7.91 -39.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049525536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.046 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds