Wall clock time and date at job start Tue Mar 31 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 O 1.21292 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.37102 * 120.00095 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99386 * 359.97438 * 9 8 6 11 11 C 1.38941 * 120.00393 * 179.97438 * 9 8 6 12 12 N 1.31408 * 120.00397 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00009 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47309 * 89.99758 * 13 11 9 15 15 H 1.48496 * 109.47518 * 209.99884 * 13 11 9 16 16 H 1.48503 * 109.47255 * 329.99853 * 13 11 9 17 17 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 18 18 C 1.38243 * 119.98270 * 79.72894 * 17 2 1 19 19 C 1.38214 * 120.00830 * 179.72846 * 18 17 2 20 20 C 1.38354 * 119.98874 * 0.54209 * 19 18 17 21 21 Cl 1.73594 * 120.01533 * 179.70691 * 20 19 18 22 22 C 1.38356 * 119.97143 * 359.73055 * 20 19 18 23 23 C 1.38220 * 119.98798 * 359.97438 * 22 20 19 24 24 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 25 25 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 26 26 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 28 28 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 29 29 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 30 30 H 0.96997 * 120.00713 * 359.97438 * 8 6 5 31 31 H 0.97001 * 120.00755 * 180.02562 * 12 11 9 32 32 H 1.07998 * 119.99392 * 0.02562 * 18 17 2 33 33 H 1.08001 * 120.00928 * 180.27225 * 19 18 17 34 34 H 1.07998 * 120.00559 * 179.97438 * 22 20 19 35 35 H 1.07991 * 119.99660 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 8 2.8677 -1.6987 -3.4702 8 7 2.7283 0.1206 -4.7325 9 6 3.1881 -0.5565 -5.8324 10 1 3.4377 -1.6045 -5.7560 11 6 3.3329 0.1055 -7.0454 12 7 3.7740 -0.5433 -8.0995 13 14 2.9004 1.9179 -7.1777 14 1 4.1005 2.7369 -6.8709 15 1 2.4364 2.2168 -8.5563 16 1 1.8204 2.2410 -6.2110 17 6 2.0324 -0.7104 1.2305 18 6 2.0613 -2.0921 1.2671 19 6 2.5272 -2.7441 2.3932 20 6 2.9540 -2.0140 3.4881 21 17 3.5321 -2.8323 4.9057 22 6 2.9195 -0.6313 3.4530 23 6 2.4591 0.0198 2.3240 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4495 -1.4979 -1.4101 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0462 -2.1182 30 1 2.5044 1.0619 -4.8011 31 1 3.8755 -0.0810 -8.9463 32 1 1.7244 -2.6619 0.4138 33 1 2.5540 -3.8234 2.4201 34 1 3.2521 -0.0608 4.3075 35 1 2.4325 1.0990 2.2962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049525536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:40 Heat of formation + Delta-G solvation = -39.239392 kcal Electronic energy + Delta-G solvation = -18859.532821 eV Core-core repulsion = 15689.207039 eV Total energy + Delta-G solvation = -3170.325782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68459 -40.11402 -37.85855 -36.95719 -35.93739 -33.75561 -32.65376 -31.95485 -29.89875 -28.08460 -25.73058 -24.39175 -23.54307 -21.46491 -21.27740 -20.30395 -18.32400 -17.63491 -17.07488 -16.61529 -16.41182 -16.13636 -15.60347 -15.16507 -14.99754 -14.73259 -14.53069 -14.37726 -14.32562 -13.93901 -13.74845 -13.39529 -13.07201 -12.77405 -12.69368 -12.40071 -12.33900 -12.10537 -11.97648 -11.88064 -11.68108 -11.50214 -10.43730 -10.23876 -9.93458 -9.53414 -9.26953 -8.40365 -6.01489 0.21330 0.40399 1.19330 1.31054 1.37236 1.45885 1.97556 2.24300 2.61624 2.82903 3.16182 3.43693 3.81759 3.88508 4.00966 4.14068 4.27219 4.30781 4.44070 4.49605 4.56263 4.59859 4.75743 4.85492 4.92594 5.06861 5.24347 5.31268 5.35218 5.52070 5.60771 5.89408 5.93554 6.10440 6.37680 6.60911 6.89369 7.41172 7.98241 8.77430 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034573 B = 0.002966 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.695395 B = 9436.894386 C = 9806.324490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.123 3.877 3 H 0.108 0.892 4 N -0.681 5.681 5 C 0.063 3.937 6 C 0.448 3.552 7 O -0.615 6.615 8 N -0.591 5.591 9 C -0.329 4.329 10 H 0.054 0.946 11 C -0.017 4.017 12 N -0.936 5.936 13 Si 0.966 3.034 14 H -0.258 1.258 15 H -0.277 1.277 16 H -0.228 1.228 17 C -0.066 4.066 18 C -0.099 4.099 19 C -0.122 4.122 20 C -0.052 4.052 21 Cl -0.078 7.078 22 C -0.114 4.114 23 C -0.102 4.102 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.345 0.655 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.390 0.610 31 H 0.279 0.721 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 7.913 24.030 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 H 0.126 0.874 4 N -0.313 5.313 5 C -0.069 4.069 6 C 0.236 3.764 7 O -0.500 6.500 8 N -0.233 5.233 9 C -0.458 4.458 10 H 0.072 0.928 11 C -0.215 4.215 12 N -0.577 5.577 13 Si 0.786 3.214 14 H -0.182 1.182 15 H -0.202 1.202 16 H -0.151 1.151 17 C -0.067 4.067 18 C -0.117 4.117 19 C -0.141 4.141 20 C -0.078 4.078 21 Cl -0.050 7.050 22 C -0.132 4.132 23 C -0.121 4.121 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.164 0.836 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.226 0.774 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.670 7.117 24.156 26.051 hybrid contribution -0.681 0.143 -0.913 1.148 sum -7.351 7.260 23.243 25.436 Atomic orbital electron populations 1.22456 0.94737 1.02629 1.03467 1.20579 0.93774 0.97764 0.86499 0.87443 1.60158 1.58822 1.09302 1.02997 1.21668 1.02034 0.95364 0.87853 1.21044 0.82434 0.87954 0.84975 1.90550 1.55318 1.18829 1.85276 1.42026 1.60604 1.11877 1.08789 1.19001 1.42308 0.96071 0.88413 0.92830 1.26144 0.96418 1.05124 0.93833 1.69808 1.46387 1.39647 1.01853 0.85344 0.80256 0.76355 0.79423 1.18208 1.20169 1.15138 1.20039 0.97762 0.93629 0.95274 1.21019 0.98860 0.94800 0.97034 1.21177 0.99650 1.00854 0.92384 1.21073 1.03787 0.93508 0.89435 1.98357 1.87555 1.79496 1.39543 1.21250 1.00173 0.91887 0.99922 1.21239 0.97815 1.01349 0.91670 0.90183 0.91525 0.92777 0.83562 0.90106 0.86585 0.77400 0.91171 0.85760 0.84725 0.83225 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.14 71.98 0.66 -2.00 16 2 C 0.12 2.31 2.79 44.17 0.12 2.43 16 3 H 0.11 1.63 7.66 -2.39 -0.02 1.61 16 4 N -0.68 -18.59 5.33 -499.44 -2.66 -21.25 16 5 C 0.06 1.78 5.97 85.56 0.51 2.29 16 6 C 0.45 19.72 7.82 87.66 0.69 20.40 16 7 O -0.62 -33.78 15.78 -3.07 -0.05 -33.83 16 8 N -0.59 -27.35 5.09 -306.99 -1.56 -28.91 16 9 C -0.33 -19.18 10.16 84.04 0.85 -18.32 16 10 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 11 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 12 N -0.94 -56.48 13.96 21.66 0.30 -56.18 16 13 Si 0.97 38.19 27.73 68.60 1.90 40.09 16 14 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 15 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 16 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 17 C -0.07 -1.33 4.95 -19.86 -0.10 -1.43 16 18 C -0.10 -2.24 9.32 22.27 0.21 -2.03 16 19 C -0.12 -2.66 9.83 22.29 0.22 -2.44 16 20 C -0.05 -1.05 6.32 22.33 0.14 -0.91 16 21 Cl -0.08 -1.50 28.96 -2.72 -0.08 -1.58 16 22 C -0.11 -1.96 9.83 22.29 0.22 -1.74 16 23 C -0.10 -1.68 9.67 22.27 0.22 -1.47 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.97 7.45 -2.39 -0.02 0.95 16 26 H 0.05 0.91 8.13 -2.39 -0.02 0.89 16 27 H 0.34 10.20 7.52 -89.69 -0.67 9.52 16 28 H 0.08 1.79 7.44 -2.39 -0.02 1.77 16 29 H 0.12 2.71 8.05 -2.39 -0.02 2.69 16 30 H 0.39 14.72 5.76 -92.71 -0.53 14.19 16 31 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.12 2.97 7.25 -2.91 -0.02 2.95 16 33 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.16 1.65 8.04 -2.91 -0.02 1.63 16 Total: -1.00 -75.19 316.14 1.91 -73.27 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.14 Total: 34.07 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 4.20 Total: -5.68 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.92 Total: -106.34 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.05 Total: -33.83 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.09 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -75.19 1.91 -73.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049525536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.035 kcal (2) G-P(sol) polarization free energy of solvation -75.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds