Wall clock time and date at job start Tue Mar 31 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46831 * 2 1 4 4 N 1.46894 * 109.47143 * 120.00054 * 2 1 3 5 5 C 1.46894 * 111.00442 * 275.00163 * 4 2 1 6 6 C 1.50706 * 109.47461 * 180.02562 * 5 4 2 7 7 O 1.21289 * 119.99354 * 359.97438 * 6 5 4 8 8 N 1.34768 * 119.99769 * 180.02562 * 6 5 4 9 9 C 1.37105 * 119.99783 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99513 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00263 * 179.97438 * 9 8 6 12 12 N 1.31403 * 120.00290 * 179.97438 * 11 9 8 13 13 Si 1.86809 * 119.99842 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47078 * 89.99854 * 13 11 9 15 15 H 1.48503 * 109.46818 * 210.00178 * 13 11 9 16 16 H 1.48498 * 109.46777 * 329.99749 * 13 11 9 17 17 C 1.50696 * 109.46922 * 240.00289 * 2 1 3 18 18 C 1.38247 * 119.98658 * 100.00234 * 17 2 1 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 2 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38218 * 119.98923 * 359.44450 * 22 20 19 24 24 H 1.09001 * 109.47280 * 59.99804 * 1 2 3 25 25 H 1.09008 * 109.47036 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47157 * 299.99499 * 1 2 3 27 27 H 1.00902 * 111.00177 * 38.96090 * 4 2 1 28 28 H 1.08996 * 109.47182 * 300.00166 * 5 4 2 29 29 H 1.08998 * 109.47006 * 59.99666 * 5 4 2 30 30 H 0.97002 * 120.00745 * 359.97438 * 8 6 5 31 31 H 0.97005 * 120.00631 * 179.97438 * 12 11 9 32 32 H 1.08003 * 119.99321 * 359.97438 * 18 17 2 33 33 H 1.08002 * 120.00776 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 35 35 H 1.07997 * 119.99399 * 180.27944 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6986 3.4698 8 7 2.7286 0.1204 4.7323 9 6 3.1896 -0.5565 5.8319 10 1 3.4399 -1.6043 5.7552 11 6 3.3345 0.1055 7.0449 12 7 3.7758 -0.5434 8.0990 13 14 2.9021 1.9180 7.1773 14 1 1.4728 2.0596 7.5543 15 1 3.7531 2.5554 8.2140 16 1 3.1369 2.5796 5.8688 17 6 2.0323 -0.7103 -1.2305 18 6 2.4587 0.0199 -2.3242 19 6 2.9200 -0.6310 -3.4529 20 6 2.9544 -2.0137 -3.4882 21 17 3.5343 -2.8319 -4.9052 22 6 2.5216 -2.7440 -2.3958 23 6 2.0659 -2.0919 -1.2655 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.4496 -1.4980 1.4099 28 1 2.7588 1.0461 2.1183 29 1 1.0871 0.6162 2.5525 30 1 2.5041 1.0615 4.8011 31 1 3.8774 -0.0812 8.9457 32 1 2.4313 1.0992 -2.2967 33 1 3.2534 -0.0604 -4.3071 34 1 2.5440 -3.8234 -2.4244 35 1 1.7322 -2.6618 -0.4110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049525537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:44 Heat of formation + Delta-G solvation = -16.877016 kcal Electronic energy + Delta-G solvation = -18858.655314 eV Core-core repulsion = 15689.299238 eV Total energy + Delta-G solvation = -3169.356076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77513 -38.47620 -36.93796 -35.99171 -33.97504 -31.81824 -31.51279 -31.15543 -29.05137 -26.59385 -24.19420 -23.46072 -22.65861 -20.61942 -19.43464 -18.44993 -17.34018 -16.20362 -15.94097 -15.29874 -15.18789 -14.82832 -14.33863 -14.14130 -13.76546 -13.58523 -13.51632 -13.23081 -12.93730 -12.69275 -12.37062 -12.13345 -11.90781 -11.76071 -11.47793 -11.32190 -11.17969 -11.09163 -10.90179 -10.61111 -9.98977 -9.58854 -9.14666 -8.70253 -8.63594 -8.21896 -8.16386 -6.32323 -3.83945 1.02138 1.19153 1.98794 3.01326 3.05061 3.13807 3.48531 3.72223 4.04371 4.09429 4.59026 4.67072 4.74972 4.84159 5.01034 5.07004 5.19923 5.24619 5.30689 5.47451 5.52183 5.59889 5.65584 5.79815 5.83133 5.89614 5.95059 6.08777 6.16156 6.42659 6.67992 7.05330 7.49586 7.56735 8.13077 8.58206 8.93617 9.40948 9.80903 10.80799 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034558 B = 0.002967 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.034135 B = 9436.167102 C = 9805.564480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 H 0.088 0.912 4 N -0.661 5.661 5 C 0.048 3.952 6 C 0.450 3.550 7 O -0.564 6.564 8 N -0.590 5.590 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.041 3.959 12 N -0.881 5.881 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.269 1.269 17 C -0.056 4.056 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.040 4.040 21 Cl -0.080 7.080 22 C -0.110 4.110 23 C -0.082 4.082 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.352 0.648 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.370 0.630 31 H 0.273 0.727 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 4.073 -22.207 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.009 3.991 3 H 0.107 0.893 4 N -0.293 5.293 5 C -0.085 4.085 6 C 0.235 3.765 7 O -0.446 6.446 8 N -0.230 5.230 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.057 4.057 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.067 4.067 21 Cl -0.052 7.052 22 C -0.129 4.129 23 C -0.100 4.100 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.172 0.828 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.203 0.797 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.482 3.268 -22.292 23.188 hybrid contribution -1.070 1.508 0.419 1.896 sum -6.552 4.776 -21.873 23.327 Atomic orbital electron populations 1.22518 0.96130 1.02746 1.02460 1.20499 0.92701 0.97480 0.88461 0.89349 1.60169 1.57772 1.09084 1.02252 1.21743 1.00049 0.95838 0.90844 1.19685 0.84802 0.88267 0.83702 1.90568 1.53815 1.16026 1.84191 1.42204 1.60144 1.11079 1.09558 1.19432 1.40321 0.97969 0.85669 0.86280 1.25040 0.97464 0.98407 0.95252 1.69617 1.45041 1.36617 1.00841 0.86669 0.79249 0.84956 0.78501 1.19666 1.20166 1.19462 1.19901 0.97367 0.93870 0.94578 1.20943 0.98980 0.99993 0.92486 1.20951 1.00852 0.92213 0.99137 1.20910 1.03479 0.92835 0.89455 1.98359 1.87518 1.79416 1.39873 1.21071 0.99305 1.00411 0.92127 1.20977 0.97966 0.94079 0.96982 0.91871 0.91993 0.91972 0.82761 0.89399 0.93559 0.79694 0.91597 0.85290 0.85223 0.85062 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.14 37.16 0.34 -1.31 16 2 C 0.12 1.30 2.79 -68.87 -0.19 1.10 16 3 H 0.09 0.89 7.66 -51.93 -0.40 0.49 16 4 N -0.66 -9.60 5.33 -109.23 -0.58 -10.19 16 5 C 0.05 0.75 5.97 -4.98 -0.03 0.72 16 6 C 0.45 9.99 7.82 -10.99 -0.09 9.90 16 7 O -0.56 -14.92 15.78 5.55 0.09 -14.83 16 8 N -0.59 -13.86 5.09 -10.96 -0.06 -13.91 16 9 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 10 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 11 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 12 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 13 Si 0.88 19.16 27.74 -169.99 -4.71 14.44 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 17 C -0.06 -0.62 4.96 -104.62 -0.52 -1.14 16 18 C -0.11 -1.03 9.67 -39.59 -0.38 -1.41 16 19 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 20 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 21 Cl -0.08 -0.81 28.96 -51.86 -1.50 -2.31 16 22 C -0.11 -1.21 9.83 -39.55 -0.39 -1.60 16 23 C -0.08 -0.94 9.32 -39.59 -0.37 -1.31 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.57 8.13 -51.92 -0.42 0.15 16 26 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 27 H 0.35 5.25 7.52 -39.29 -0.30 4.96 16 28 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 29 H 0.05 0.62 7.44 -51.93 -0.39 0.23 16 30 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.13 0.98 8.04 -52.48 -0.42 0.56 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.13 1.53 7.25 -52.49 -0.38 1.15 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -32.04 316.14 -7.91 -39.94 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -4.17 Total: 11.90 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.51 Total: -4.93 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.14 Total: -48.99 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.09 Total: -14.83 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.44 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.04 -7.91 -39.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049525537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.068 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds