Wall clock time and date at job start Tue Mar 31 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46831 * 2 1 4 4 N 1.46894 * 109.47143 * 120.00054 * 2 1 3 5 5 C 1.46894 * 111.00442 * 275.00163 * 4 2 1 6 6 C 1.50706 * 109.47461 * 180.02562 * 5 4 2 7 7 O 1.21289 * 119.99354 * 359.97438 * 6 5 4 8 8 N 1.34768 * 119.99769 * 180.02562 * 6 5 4 9 9 C 1.37105 * 119.99783 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99513 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00263 * 179.97438 * 9 8 6 12 12 N 1.31403 * 120.00290 * 179.97438 * 11 9 8 13 13 Si 1.86809 * 119.99842 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47078 * 89.99854 * 13 11 9 15 15 H 1.48503 * 109.46818 * 210.00178 * 13 11 9 16 16 H 1.48498 * 109.46777 * 329.99749 * 13 11 9 17 17 C 1.50696 * 109.46922 * 240.00289 * 2 1 3 18 18 C 1.38247 * 119.98658 * 100.00234 * 17 2 1 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 2 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38218 * 119.98923 * 359.44450 * 22 20 19 24 24 H 1.09001 * 109.47280 * 59.99804 * 1 2 3 25 25 H 1.09008 * 109.47036 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47157 * 299.99499 * 1 2 3 27 27 H 1.00902 * 111.00177 * 38.96090 * 4 2 1 28 28 H 1.08996 * 109.47182 * 300.00166 * 5 4 2 29 29 H 1.08998 * 109.47006 * 59.99666 * 5 4 2 30 30 H 0.97002 * 120.00745 * 359.97438 * 8 6 5 31 31 H 0.97005 * 120.00631 * 179.97438 * 12 11 9 32 32 H 1.08003 * 119.99321 * 359.97438 * 18 17 2 33 33 H 1.08002 * 120.00776 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 35 35 H 1.07997 * 119.99399 * 180.27944 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6986 3.4698 8 7 2.7286 0.1204 4.7323 9 6 3.1896 -0.5565 5.8319 10 1 3.4399 -1.6043 5.7552 11 6 3.3345 0.1055 7.0449 12 7 3.7758 -0.5434 8.0990 13 14 2.9021 1.9180 7.1773 14 1 1.4728 2.0596 7.5543 15 1 3.7531 2.5554 8.2140 16 1 3.1369 2.5796 5.8688 17 6 2.0323 -0.7103 -1.2305 18 6 2.4587 0.0199 -2.3242 19 6 2.9200 -0.6310 -3.4529 20 6 2.9544 -2.0137 -3.4882 21 17 3.5343 -2.8319 -4.9052 22 6 2.5216 -2.7440 -2.3958 23 6 2.0659 -2.0919 -1.2655 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.4496 -1.4980 1.4099 28 1 2.7588 1.0461 2.1183 29 1 1.0871 0.6162 2.5525 30 1 2.5041 1.0615 4.8011 31 1 3.8774 -0.0812 8.9457 32 1 2.4313 1.0992 -2.2967 33 1 3.2534 -0.0604 -4.3071 34 1 2.5440 -3.8234 -2.4244 35 1 1.7322 -2.6618 -0.4110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049525537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:43 Heat of formation + Delta-G solvation = -39.217002 kcal Electronic energy + Delta-G solvation = -18859.624049 eV Core-core repulsion = 15689.299238 eV Total energy + Delta-G solvation = -3170.324811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68489 -40.11419 -37.85906 -36.95767 -35.93728 -33.75592 -32.65346 -31.95473 -29.89916 -28.08430 -25.73051 -24.39142 -23.54272 -21.46472 -21.27718 -20.30363 -18.32392 -17.63489 -17.07657 -16.61381 -16.41004 -16.13756 -15.61101 -15.15712 -14.98982 -14.73984 -14.52599 -14.37930 -14.32810 -13.94406 -13.75174 -13.38946 -13.06768 -12.77208 -12.69277 -12.40548 -12.33513 -12.10765 -11.97674 -11.88282 -11.68203 -11.49951 -10.43518 -10.24032 -9.93496 -9.53308 -9.26947 -8.40367 -6.01483 0.21284 0.40380 1.19264 1.31386 1.36836 1.45999 1.97720 2.24275 2.61536 2.82757 3.16399 3.43631 3.81816 3.88494 4.00931 4.14095 4.27220 4.30790 4.44182 4.49642 4.56250 4.59827 4.75750 4.85520 4.92741 5.06842 5.24475 5.31236 5.35228 5.52074 5.60758 5.89397 5.93591 6.10539 6.37863 6.60938 6.89380 7.41213 7.98275 8.77424 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034558 B = 0.002967 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.034135 B = 9436.167102 C = 9805.564480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.123 3.877 3 H 0.107 0.893 4 N -0.681 5.681 5 C 0.063 3.937 6 C 0.448 3.552 7 O -0.615 6.615 8 N -0.591 5.591 9 C -0.329 4.329 10 H 0.054 0.946 11 C -0.017 4.017 12 N -0.936 5.936 13 Si 0.966 3.034 14 H -0.256 1.256 15 H -0.277 1.277 16 H -0.229 1.229 17 C -0.066 4.066 18 C -0.102 4.102 19 C -0.114 4.114 20 C -0.051 4.051 21 Cl -0.078 7.078 22 C -0.122 4.122 23 C -0.098 4.098 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.345 0.655 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.390 0.610 31 H 0.279 0.721 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.591 7.921 -24.032 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 H 0.125 0.875 4 N -0.313 5.313 5 C -0.069 4.069 6 C 0.236 3.764 7 O -0.500 6.500 8 N -0.233 5.233 9 C -0.458 4.458 10 H 0.072 0.928 11 C -0.215 4.215 12 N -0.577 5.577 13 Si 0.786 3.214 14 H -0.181 1.181 15 H -0.202 1.202 16 H -0.152 1.152 17 C -0.067 4.067 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.078 4.078 21 Cl -0.050 7.050 22 C -0.141 4.141 23 C -0.117 4.117 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.165 0.835 28 H 0.133 0.867 29 H 0.100 0.900 30 H 0.226 0.774 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.631 7.127 -24.158 26.046 hybrid contribution -0.681 0.144 0.911 1.146 sum -7.312 7.271 -23.247 25.432 Atomic orbital electron populations 1.22457 0.94717 1.02636 1.03478 1.20575 0.93787 0.97751 0.86496 0.87470 1.60147 1.58842 1.09309 1.03000 1.21665 1.02050 0.95342 0.87860 1.21041 0.82455 0.87962 0.84947 1.90549 1.55347 1.18829 1.85248 1.42028 1.60619 1.11858 1.08791 1.19002 1.42445 0.96034 0.88320 0.92830 1.26145 0.96397 1.05128 0.93844 1.69807 1.46364 1.39688 1.01829 0.85347 0.79389 0.76366 0.80297 1.18058 1.20216 1.15222 1.20041 0.97760 0.93632 0.95288 1.21242 0.97797 1.01346 0.91688 1.21250 1.00186 0.91891 0.99917 1.21073 1.03736 0.93507 0.89477 1.98357 1.87482 1.79506 1.39608 1.21177 0.99683 1.00850 0.92362 1.21019 0.98901 0.94802 0.96980 0.90197 0.92774 0.91488 0.83544 0.86691 0.90008 0.77398 0.91171 0.82493 0.83225 0.84720 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.14 71.98 0.66 -2.00 16 2 C 0.12 2.31 2.79 44.17 0.12 2.43 16 3 H 0.11 1.63 7.66 -2.39 -0.02 1.61 16 4 N -0.68 -18.59 5.33 -499.49 -2.66 -21.26 16 5 C 0.06 1.78 5.97 85.56 0.51 2.29 16 6 C 0.45 19.72 7.82 87.66 0.69 20.41 16 7 O -0.62 -33.78 15.78 -3.06 -0.05 -33.83 16 8 N -0.59 -27.35 5.09 -306.99 -1.56 -28.91 16 9 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 10 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 11 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 12 N -0.94 -56.48 13.96 21.66 0.30 -56.18 16 13 Si 0.97 38.18 27.74 68.60 1.90 40.08 16 14 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 15 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 16 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 17 C -0.07 -1.33 4.96 -19.86 -0.10 -1.43 16 18 C -0.10 -1.69 9.67 22.27 0.22 -1.47 16 19 C -0.11 -1.97 9.83 22.29 0.22 -1.75 16 20 C -0.05 -1.05 6.32 22.32 0.14 -0.90 16 21 Cl -0.08 -1.50 28.96 -2.72 -0.08 -1.58 16 22 C -0.12 -2.66 9.83 22.29 0.22 -2.44 16 23 C -0.10 -2.24 9.32 22.27 0.21 -2.03 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.91 8.13 -2.38 -0.02 0.89 16 26 H 0.07 0.97 7.45 -2.39 -0.02 0.95 16 27 H 0.35 10.19 7.52 -89.69 -0.67 9.51 16 28 H 0.12 2.71 8.05 -2.39 -0.02 2.69 16 29 H 0.08 1.80 7.44 -2.39 -0.02 1.78 16 30 H 0.39 14.73 5.76 -92.71 -0.53 14.19 16 31 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 32 H 0.16 1.66 8.04 -2.91 -0.02 1.63 16 33 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 35 H 0.12 2.97 7.25 -2.91 -0.02 2.95 16 Total: -1.00 -75.18 316.14 1.91 -73.26 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.14 Total: 34.08 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 4.20 Total: -5.68 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.92 Total: -106.34 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.05 Total: -33.83 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.08 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -75.18 1.91 -73.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049525537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.044 kcal (2) G-P(sol) polarization free energy of solvation -75.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds