Wall clock time and date at job start Tue Mar 31 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47267 * 60.00028 * 9 7 5 11 11 H 1.48501 * 109.47250 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47201 * 299.99856 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.40005 * 120.00159 * 175.37752 * 16 14 13 18 18 C 1.38852 * 120.05561 * 214.81468 * 17 16 14 19 19 C 1.38122 * 119.93730 * 179.77003 * 18 17 16 20 20 C 1.38373 * 120.05736 * 0.50840 * 19 18 17 21 21 Cl 1.73606 * 119.94375 * 179.72413 * 20 19 18 22 22 C 1.38384 * 120.11565 * 359.74692 * 20 19 18 23 23 C 1.38110 * 120.05650 * 359.97438 * 22 20 19 24 24 H 1.09009 * 109.47364 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 26 26 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 27 27 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 28 28 H 1.08995 * 109.47360 * 120.00575 * 2 1 3 29 29 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 30 30 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 31 31 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 32 32 H 1.07998 * 120.03377 * 0.02562 * 18 17 16 33 33 H 1.08001 * 119.96869 * 180.22887 * 19 18 17 34 34 H 1.08004 * 119.97353 * 179.97438 * 22 20 19 35 35 H 1.07998 * 120.02871 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.4994 2.2815 1.3820 11 1 6.3979 0.2167 2.6501 12 1 6.5975 0.1473 0.2347 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2128 3.7854 -2.6671 18 6 -1.8355 3.7420 -3.9074 19 6 -3.1154 4.2402 -4.0539 20 6 -3.7728 4.7919 -2.9685 21 17 -5.3787 5.4238 -3.1577 22 6 -3.1524 4.8412 -1.7325 23 6 -1.8749 4.3391 -1.5793 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8294 -0.0619 2.9494 30 1 2.2718 2.1232 -1.9978 31 1 0.7249 3.3614 -3.2365 32 1 -1.3212 3.3153 -4.7558 33 1 -3.6016 4.2033 -5.0176 34 1 -3.6675 5.2726 -0.8870 35 1 -1.3910 4.3782 -0.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:56 Heat of formation + Delta-G solvation = -15.335860 kcal Electronic energy + Delta-G solvation = -19512.474657 eV Core-core repulsion = 16343.185410 eV Total energy + Delta-G solvation = -3169.289247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33688 -38.62308 -36.55683 -35.38084 -34.16427 -32.45754 -31.04542 -30.97592 -28.96800 -26.84506 -23.40527 -22.99408 -22.32936 -20.64473 -19.58447 -18.28595 -17.67559 -16.61253 -16.04630 -15.45890 -15.10629 -14.68440 -14.32687 -14.08549 -13.59809 -13.47946 -13.25824 -12.70556 -12.48374 -12.22851 -11.76631 -11.56650 -11.48316 -11.28440 -11.03601 -10.88304 -10.85506 -10.36340 -10.23174 -9.97819 -9.62378 -9.44293 -9.10365 -8.99315 -8.55043 -8.09729 -7.76695 -6.16693 -4.26587 1.15310 1.31508 2.13449 3.08315 3.22502 3.28450 3.29984 3.51186 3.90810 4.28250 4.75442 4.86248 4.89709 5.14938 5.26101 5.40735 5.54073 5.91448 6.00920 6.27211 6.33202 6.37834 6.44923 6.52363 6.63768 6.95803 7.01335 7.09887 7.29352 7.32619 7.39526 7.59682 7.81152 7.91773 8.13992 8.66630 8.77606 9.16378 9.41483 10.88525 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.041903 B = 0.003317 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.051916 B = 8438.194627 C = 8608.890515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.717 5.717 14 C 0.692 3.308 15 O -0.574 6.574 16 N -0.697 5.697 17 C 0.188 3.812 18 C -0.146 4.146 19 C -0.092 4.092 20 C -0.062 4.062 21 Cl -0.084 7.084 22 C -0.090 4.090 23 C -0.110 4.110 24 H 0.021 0.979 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.030 0.970 28 H 0.100 0.900 29 H 0.266 0.734 30 H 0.386 0.614 31 H 0.404 0.596 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 7.088 -12.058 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.367 5.367 14 C 0.393 3.607 15 O -0.452 6.452 16 N -0.345 5.345 17 C 0.091 3.909 18 C -0.168 4.168 19 C -0.111 4.111 20 C -0.089 4.089 21 Cl -0.055 7.055 22 C -0.110 4.110 23 C -0.131 4.131 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.218 0.782 31 H 0.239 0.761 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.390 6.915 -10.932 16.591 hybrid contribution 1.461 -0.031 -0.679 1.612 sum -8.929 6.885 -11.611 16.184 Atomic orbital electron populations 1.21814 0.98245 0.97978 1.01251 1.21958 0.92697 0.99817 1.02275 1.18738 0.94026 0.88928 0.79827 0.93150 1.21176 0.90608 1.39339 1.06389 0.92139 1.24873 0.98648 0.94741 0.95340 1.69887 1.35263 1.37335 1.09338 0.86499 0.84740 0.78317 0.77488 1.20180 1.21097 1.20175 1.45857 1.13321 1.58154 1.19405 1.16120 0.83752 0.78717 0.82158 1.90892 1.51687 1.64770 1.37834 1.42918 1.11971 1.61006 1.18604 1.17644 0.85209 0.93976 0.94067 1.20816 0.94936 1.03951 0.97080 1.20721 0.94160 0.98319 0.97903 1.20826 0.87443 1.04871 0.95786 1.98345 1.23459 1.85869 1.97839 1.20973 0.94853 0.99406 0.95736 1.21438 0.94694 0.96589 1.00344 0.95947 0.93119 0.94350 0.95078 0.88213 0.92426 0.78172 0.76146 0.85046 0.85015 0.84918 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.68 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.29 6.93 2.24 -69.08 -0.15 6.77 16 4 H 0.05 1.42 7.57 -51.93 -0.39 1.03 16 5 C -0.54 -13.67 8.73 -34.44 -0.30 -13.98 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.49 16 9 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.72 -13.97 5.02 -59.81 -0.30 -14.27 16 14 C 0.69 12.99 6.99 -86.92 -0.61 12.38 16 15 O -0.57 -12.67 10.92 5.29 0.06 -12.61 16 16 N -0.70 -9.87 5.35 -14.21 -0.08 -9.94 16 17 C 0.19 2.62 6.30 -83.67 -0.53 2.09 16 18 C -0.15 -1.65 9.97 -39.40 -0.39 -2.04 16 19 C -0.09 -1.00 9.82 -39.57 -0.39 -1.39 16 20 C -0.06 -0.74 6.32 -39.48 -0.25 -0.99 16 21 Cl -0.08 -0.91 28.95 -51.86 -1.50 -2.41 16 22 C -0.09 -1.17 9.82 -39.57 -0.39 -1.55 16 23 C -0.11 -1.64 8.69 -39.40 -0.34 -1.98 16 24 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 26 H 0.04 0.83 5.66 -51.93 -0.29 0.54 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 6.41 8.56 -40.82 -0.35 6.06 16 31 H 0.40 4.30 8.84 -40.82 -0.36 3.94 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.15 2.61 6.22 -52.49 -0.33 2.29 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -28.84 307.68 -8.95 -37.79 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -4.10 Total: 10.10 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.28 Total: -4.89 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.25 Total: -47.70 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.06 Total: -12.61 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.84 -8.95 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.454 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds