Wall clock time and date at job start Tue Mar 31 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47349 * 2 1 4 4 H 1.09000 * 109.47100 * 304.99833 * 3 2 1 5 5 C 1.50694 * 109.47107 * 184.99593 * 3 2 1 6 6 H 1.08000 * 120.00307 * 240.00029 * 5 3 2 7 7 C 1.37876 * 120.00021 * 60.00131 * 5 3 2 8 8 N 1.31522 * 119.99891 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00158 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47107 * 90.00278 * 9 7 5 11 11 H 1.48505 * 109.46800 * 209.99960 * 9 7 5 12 12 H 1.48498 * 109.46917 * 330.00251 * 9 7 5 13 13 N 1.46504 * 109.46802 * 64.99825 * 3 2 1 14 14 C 1.34777 * 119.99743 * 274.99921 * 13 3 2 15 15 O 1.21582 * 120.00261 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99582 * 180.02562 * 14 13 3 17 17 C 1.39997 * 119.99764 * 174.68627 * 16 14 13 18 18 C 1.38848 * 120.06119 * 326.56662 * 17 16 14 19 19 C 1.38107 * 119.94746 * 179.76887 * 18 17 16 20 20 C 1.38379 * 120.05401 * 0.50677 * 19 18 17 21 21 Cl 1.73608 * 119.94205 * 179.72038 * 20 19 18 22 22 C 1.38375 * 120.11494 * 359.75062 * 20 19 18 23 23 C 1.38111 * 120.05802 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47539 * 300.00174 * 1 2 3 26 26 H 1.09001 * 109.46691 * 60.00376 * 1 2 3 27 27 H 1.09005 * 109.47367 * 239.99621 * 2 1 3 28 28 H 1.09000 * 109.46707 * 120.00175 * 2 1 3 29 29 H 0.97001 * 120.00139 * 179.97438 * 8 7 5 30 30 H 0.96998 * 120.00155 * 94.99943 * 13 3 2 31 31 H 0.97002 * 120.00248 * 354.69117 * 16 14 13 32 32 H 1.08008 * 120.02477 * 0.02562 * 18 17 16 33 33 H 1.08004 * 119.97264 * 180.23303 * 19 18 17 34 34 H 1.08001 * 119.97539 * 179.97438 * 22 20 19 35 35 H 1.08002 * 120.03070 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2278 8 7 3.4062 0.3374 -2.1733 9 14 6.0051 0.8811 -1.3816 10 1 6.5549 -0.3504 -0.7600 11 1 6.3831 0.9221 -2.8171 12 1 6.5570 2.0736 -0.6899 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3411 2.6327 0.4317 16 7 0.0788 3.2673 2.5184 17 6 -1.1394 3.9522 2.6020 18 6 -1.6431 4.6138 1.4901 19 6 -2.8474 5.2846 1.5739 20 6 -3.5469 5.3066 2.7677 21 17 -5.0569 6.1568 2.8718 22 6 -3.0445 4.6525 3.8788 23 6 -1.8434 3.9754 3.7987 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8293 -0.0605 -2.9502 30 1 2.2719 2.1231 1.9978 31 1 0.6663 3.2269 3.2891 32 1 -1.0956 4.6004 0.5592 33 1 -3.2414 5.7963 0.7082 34 1 -3.5921 4.6714 4.8095 35 1 -1.4516 3.4654 4.6663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178176.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:59 Heat of formation + Delta-G solvation = -15.901174 kcal Electronic energy + Delta-G solvation = -19500.990580 eV Core-core repulsion = 16331.676820 eV Total energy + Delta-G solvation = -3169.313761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33999 -38.62949 -36.55712 -35.38258 -34.16625 -32.45498 -31.06015 -30.97059 -28.97664 -26.84971 -23.41972 -23.00832 -22.33179 -20.62868 -19.58154 -18.28597 -17.69643 -16.60334 -16.03897 -15.52391 -15.08601 -14.67252 -14.33459 -14.02768 -13.58968 -13.48123 -13.29529 -12.70591 -12.49537 -12.23986 -11.78036 -11.56927 -11.48839 -11.29045 -11.02976 -10.88836 -10.84942 -10.35887 -10.22792 -9.98913 -9.64194 -9.48569 -9.09761 -9.00478 -8.55770 -8.07608 -7.76493 -6.17065 -4.26767 1.15542 1.30866 2.13579 3.07847 3.21151 3.28830 3.31021 3.49585 3.93275 4.28108 4.73965 4.85438 4.89393 5.14725 5.25310 5.40213 5.52664 5.90784 6.00091 6.26518 6.30704 6.37339 6.44300 6.51203 6.63304 6.95481 7.00110 7.09258 7.28923 7.32113 7.39164 7.59735 7.80815 7.91385 8.13602 8.66449 8.77534 9.16085 9.41313 10.88230 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.039135 B = 0.003319 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.293390 B = 8434.807022 C = 8539.128757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.717 5.717 14 C 0.691 3.309 15 O -0.573 6.573 16 N -0.697 5.697 17 C 0.192 3.808 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.063 4.063 21 Cl -0.084 7.084 22 C -0.090 4.090 23 C -0.148 4.148 24 H 0.021 0.979 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.403 0.597 32 H 0.149 0.851 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 7.638 11.901 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.367 5.367 14 C 0.392 3.608 15 O -0.451 6.451 16 N -0.345 5.345 17 C 0.095 3.905 18 C -0.132 4.132 19 C -0.107 4.107 20 C -0.091 4.091 21 Cl -0.055 7.055 22 C -0.109 4.109 23 C -0.169 4.169 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.218 0.782 31 H 0.238 0.762 32 H 0.166 0.834 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.104 7.507 10.759 16.559 hybrid contribution 1.433 -0.094 0.675 1.587 sum -8.671 7.413 11.434 16.151 Atomic orbital electron populations 1.21818 0.98243 0.97980 1.01268 1.21967 0.92698 0.99841 1.02286 1.18746 0.94064 0.88916 0.79825 0.93145 1.21206 0.90585 1.39231 1.06385 0.92081 1.24879 0.98654 0.94763 0.95335 1.69896 1.35163 1.37442 1.09311 0.86442 0.84756 0.78434 0.77429 1.20545 1.21038 1.19873 1.45866 1.12895 1.58628 1.19352 1.16124 0.83679 0.78771 0.82241 1.90915 1.51655 1.64350 1.38134 1.42964 1.20077 1.56124 1.15307 1.17627 0.86457 0.92021 0.94434 1.21275 0.96452 0.95720 0.99712 1.20937 0.94386 0.99097 0.96310 1.20804 0.89897 1.02243 0.96124 1.98345 1.32011 1.76607 1.98533 1.20719 0.95602 0.97062 0.97546 1.20792 0.95144 1.03191 0.97819 0.95940 0.94346 0.93111 0.88210 0.95077 0.92486 0.78167 0.76152 0.83379 0.84901 0.85003 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.29 6.92 2.24 -69.08 -0.15 6.76 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.64 8.73 -34.44 -0.30 -13.94 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.09 11.29 55.43 0.63 -23.47 16 9 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.72 -13.96 5.03 -59.81 -0.30 -14.26 16 14 C 0.69 12.99 6.87 -86.92 -0.60 12.39 16 15 O -0.57 -12.71 11.17 5.29 0.06 -12.65 16 16 N -0.70 -9.87 5.35 -14.22 -0.08 -9.95 16 17 C 0.19 2.67 6.28 -83.67 -0.53 2.15 16 18 C -0.11 -1.65 8.65 -39.40 -0.34 -1.99 16 19 C -0.09 -1.14 9.82 -39.58 -0.39 -1.53 16 20 C -0.06 -0.76 6.32 -39.48 -0.25 -1.01 16 21 Cl -0.08 -0.91 28.95 -51.86 -1.50 -2.41 16 22 C -0.09 -0.98 9.82 -39.58 -0.39 -1.36 16 23 C -0.15 -1.66 9.96 -39.40 -0.39 -2.06 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 27 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 30 H 0.39 6.41 8.56 -40.82 -0.35 6.06 16 31 H 0.40 4.29 8.83 -40.82 -0.36 3.93 16 32 H 0.15 2.53 6.42 -52.48 -0.34 2.19 16 33 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -28.94 307.94 -8.94 -37.88 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.10 Total: 9.95 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -3.26 Total: -4.81 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.25 Total: -47.67 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.06 Total: -12.65 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.94 -8.94 -37.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178176.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.979 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds