Wall clock time and date at job start Tue Mar 31 2020 05:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46642 * 2 1 4 4 H 1.08995 * 109.47224 * 303.74079 * 3 2 1 5 5 C 1.50707 * 109.46842 * 183.74246 * 3 2 1 6 6 H 1.08001 * 120.00156 * 245.90572 * 5 3 2 7 7 C 1.37872 * 119.99918 * 65.90936 * 5 3 2 8 8 N 1.31509 * 120.00064 * 199.45086 * 7 5 3 9 9 Si 1.86803 * 120.00159 * 19.45421 * 7 5 3 10 10 H 1.48497 * 109.47326 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47034 * 300.00256 * 9 7 5 12 12 H 1.48503 * 109.46916 * 59.99879 * 9 7 5 13 13 N 1.46500 * 109.47149 * 63.74526 * 3 2 1 14 14 C 1.34773 * 120.00182 * 275.00001 * 13 3 2 15 15 O 1.21583 * 119.99699 * 359.97438 * 14 13 3 16 16 N 1.34777 * 120.00091 * 180.02562 * 14 13 3 17 17 C 1.39945 * 119.99545 * 184.74449 * 16 14 13 18 18 C 1.38888 * 120.06649 * 321.66030 * 17 16 14 19 19 C 1.38097 * 119.95935 * 179.76946 * 18 17 16 20 20 C 1.38281 * 120.08172 * 0.51494 * 19 18 17 21 21 C 1.38384 * 120.12475 * 359.73820 * 20 19 18 22 22 Cl 1.73599 * 119.97825 * 180.02562 * 21 20 19 23 23 C 1.38245 * 120.04473 * 0.02562 * 21 20 19 24 24 H 1.09002 * 109.47690 * 60.00156 * 1 2 3 25 25 H 1.09000 * 109.46970 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47538 * 299.99496 * 1 2 3 27 27 H 1.08993 * 109.47216 * 240.00456 * 2 1 3 28 28 H 1.08997 * 109.47240 * 119.99756 * 2 1 3 29 29 H 0.96999 * 120.00299 * 354.96136 * 8 7 5 30 30 H 0.97009 * 119.99842 * 94.99932 * 13 3 2 31 31 H 0.96995 * 120.00167 * 4.73858 * 16 14 13 32 32 H 1.08004 * 120.02433 * 0.02562 * 18 17 16 33 33 H 1.08002 * 119.96422 * 180.25064 * 19 18 17 34 34 H 1.08000 * 119.94073 * 179.72482 * 20 19 18 35 35 H 1.08001 * 120.04485 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6228 1.9753 -0.8545 5 6 3.5441 1.4436 -0.0927 6 1 4.1359 1.8072 0.7343 7 6 4.1647 0.9806 -1.2335 8 7 5.4286 0.6193 -1.1939 9 14 3.2104 0.8664 -2.8353 10 1 4.0984 0.3431 -3.9043 11 1 2.0547 -0.0493 -2.6587 12 1 2.7195 2.2152 -3.2162 13 7 1.6265 2.1066 1.2387 14 6 0.4071 2.6742 1.3246 15 8 -0.3497 2.6354 0.3738 16 7 0.0271 3.2855 2.4640 17 6 -1.2733 3.7874 2.5886 18 6 -1.8924 4.3931 1.5028 19 6 -3.1774 4.8833 1.6268 20 6 -3.8447 4.7814 2.8337 21 6 -3.2292 4.1833 3.9193 22 17 -4.0707 4.0569 5.4324 23 6 -1.9447 3.6864 3.7996 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.9443 0.7468 -0.3823 30 1 2.2305 2.1378 1.9972 31 1 0.6548 3.3775 3.1977 32 1 -1.3707 4.4769 0.5609 33 1 -3.6604 5.3507 0.7814 34 1 -4.8480 5.1696 2.9294 35 1 -1.4645 3.2192 4.6467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:05 Heat of formation + Delta-G solvation = -15.423645 kcal Electronic energy + Delta-G solvation = -19630.123931 eV Core-core repulsion = 16460.830877 eV Total energy + Delta-G solvation = -3169.293053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45434 -38.76355 -36.68144 -35.60693 -34.34604 -32.51978 -31.48943 -30.82212 -29.28846 -27.10886 -23.18837 -22.83252 -22.26712 -20.83991 -19.75936 -18.58338 -17.89349 -17.07038 -16.30700 -15.62425 -15.19886 -14.90094 -14.45502 -13.98419 -13.71228 -13.61599 -13.35203 -12.76167 -12.60620 -12.39657 -11.98938 -11.89047 -11.71284 -11.55370 -11.09144 -10.91896 -10.74488 -10.47282 -10.21866 -9.90725 -9.71529 -9.55438 -9.14731 -8.89251 -8.35157 -8.31965 -8.01909 -6.64236 -4.26631 1.12470 1.15744 1.94180 2.99610 3.36353 3.41395 3.42147 3.57599 3.77543 4.37922 4.64889 4.75612 4.93845 5.10654 5.14516 5.32261 5.43942 5.60457 6.03691 6.06086 6.08422 6.21122 6.26138 6.29385 6.44446 6.61609 6.76893 6.89608 6.93497 7.00588 7.10477 7.35947 7.42852 7.71024 8.19167 8.52627 8.68260 9.02309 9.42019 10.76788 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.003709 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.434347 B = 7546.732307 C = 7738.102605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.265 3.735 4 H 0.042 0.958 5 C -0.621 4.621 6 H 0.061 0.939 7 C 0.041 3.959 8 N -0.894 5.894 9 Si 1.039 2.961 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.280 1.280 13 N -0.710 5.710 14 C 0.694 3.306 15 O -0.578 6.578 16 N -0.697 5.697 17 C 0.192 3.808 18 C -0.112 4.112 19 C -0.090 4.090 20 C -0.135 4.135 21 C -0.017 4.017 22 Cl -0.076 7.076 23 C -0.146 4.146 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.269 0.731 30 H 0.391 0.609 31 H 0.405 0.595 32 H 0.146 0.854 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.359 7.176 10.134 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.162 3.838 4 H 0.060 0.940 5 C -0.659 4.659 6 H 0.079 0.921 7 C -0.166 4.166 8 N -0.527 5.527 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.206 1.206 13 N -0.361 5.361 14 C 0.395 3.605 15 O -0.455 6.455 16 N -0.345 5.345 17 C 0.096 3.904 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.155 4.155 21 C -0.044 4.044 22 Cl -0.048 7.048 23 C -0.168 4.168 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.223 0.777 31 H 0.240 0.760 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.861 6.538 7.746 18.824 hybrid contribution 0.513 0.482 2.650 2.742 sum -15.348 7.021 10.395 19.823 Atomic orbital electron populations 1.21859 0.97299 0.98784 1.01925 1.22326 0.93822 0.99771 1.01707 1.18980 0.95193 0.88090 0.81583 0.93995 1.22053 0.89512 1.49801 1.04564 0.92057 1.25669 0.97081 0.91970 1.01858 1.70885 1.09721 1.39467 1.32600 0.84097 0.75676 0.77708 0.75836 1.20856 1.19610 1.20588 1.45572 1.13577 1.57999 1.18966 1.16089 0.83448 0.78622 0.82352 1.90893 1.53227 1.64964 1.36431 1.42808 1.11899 1.61213 1.18606 1.17323 0.85015 0.94359 0.93724 1.21495 0.95830 0.96197 0.99776 1.21017 0.94263 0.98759 0.96819 1.20972 1.00771 1.01731 0.91985 1.20531 0.93273 1.02955 0.87629 1.98360 1.77754 1.96997 1.31655 1.20730 0.93596 1.04042 0.98448 0.92889 0.95190 0.93503 0.91442 0.93113 0.92042 0.77663 0.76004 0.83587 0.84875 0.85188 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.49 37.16 0.32 -2.53 16 2 C -0.14 -3.01 5.32 -26.73 -0.14 -3.15 16 3 C 0.27 6.11 1.84 -69.08 -0.13 5.98 16 4 H 0.04 1.05 6.18 -51.93 -0.32 0.73 16 5 C -0.62 -16.29 8.98 -34.44 -0.31 -16.60 16 6 H 0.06 1.68 7.96 -52.49 -0.42 1.26 16 7 C 0.04 1.14 5.29 -17.82 -0.09 1.04 16 8 N -0.89 -26.09 13.69 55.43 0.76 -25.33 16 9 Si 1.04 24.57 26.37 -169.99 -4.48 20.09 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.00 5.84 56.52 0.33 -5.67 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.71 -13.60 5.01 -59.81 -0.30 -13.90 16 14 C 0.69 12.60 6.90 -86.92 -0.60 12.00 16 15 O -0.58 -12.08 11.11 5.29 0.06 -12.02 16 16 N -0.70 -9.71 5.34 -14.23 -0.08 -9.78 16 17 C 0.19 2.62 6.24 -83.69 -0.52 2.10 16 18 C -0.11 -1.56 8.68 -39.39 -0.34 -1.91 16 19 C -0.09 -1.01 10.04 -39.62 -0.40 -1.41 16 20 C -0.13 -1.43 9.83 -39.51 -0.39 -1.82 16 21 C -0.02 -0.19 6.32 -39.52 -0.25 -0.44 16 22 Cl -0.08 -0.78 28.95 -51.86 -1.50 -2.28 16 23 C -0.15 -1.73 9.75 -39.36 -0.38 -2.11 16 24 H 0.05 1.11 7.77 -51.93 -0.40 0.71 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.94 5.68 -51.93 -0.29 0.65 16 27 H 0.07 1.55 5.08 -51.93 -0.26 1.28 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.27 7.77 8.73 -40.82 -0.36 7.41 16 30 H 0.39 6.59 8.54 -40.82 -0.35 6.24 16 31 H 0.40 4.35 8.84 -40.82 -0.36 3.99 16 32 H 0.15 2.31 6.47 -52.48 -0.34 1.97 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 303.90 15.07 4.58 4.58 Total: -1.00 -29.82 303.90 -8.29 -38.11 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.09 Total: 9.38 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -3.24 Total: -8.85 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.38 Total: -49.01 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.06 Total: -12.02 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -4.48 Total: 20.09 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.82 -8.29 -38.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.689 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds