Wall clock time and date at job start Tue Mar 31 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47084 * 2 1 4 4 C 1.50697 * 109.47185 * 120.00407 * 2 1 3 5 5 O 1.21286 * 120.00235 * 120.00185 * 4 2 1 6 6 N 1.34781 * 119.99757 * 300.00055 * 4 2 1 7 7 C 1.39931 * 119.99835 * 176.14596 * 6 4 2 8 8 C 1.38901 * 120.05705 * 215.00024 * 7 6 4 9 9 C 1.38103 * 119.94968 * 179.72511 * 8 7 6 10 10 C 1.38289 * 120.08190 * 0.57064 * 9 8 7 11 11 C 1.38376 * 120.12638 * 359.70742 * 10 9 8 12 12 Cl 1.73601 * 119.97706 * 180.02562 * 11 10 9 13 13 C 1.38247 * 120.04928 * 359.97438 * 11 10 9 14 14 N 1.46502 * 109.47092 * 240.00366 * 2 1 3 15 15 C 1.46503 * 119.99798 * 299.99451 * 14 2 1 16 16 C 1.36940 * 120.00072 * 120.00049 * 14 2 1 17 17 H 1.07999 * 119.99925 * 33.36186 * 16 14 2 18 18 C 1.38809 * 120.00084 * 213.36204 * 16 14 2 19 19 N 1.31621 * 119.99636 * 5.73940 * 18 16 14 20 20 Si 1.86797 * 120.00225 * 185.73428 * 18 16 14 21 21 H 1.48508 * 109.46547 * 60.00303 * 20 18 16 22 22 H 1.48496 * 109.47133 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47167 * 300.00630 * 20 18 16 24 24 H 1.09001 * 109.47084 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47398 * 59.99792 * 1 2 3 26 26 H 1.09000 * 109.47061 * 299.99427 * 1 2 3 27 27 H 0.96997 * 119.99865 * 356.14121 * 6 4 2 28 28 H 1.07999 * 120.02719 * 359.97438 * 8 7 6 29 29 H 1.08000 * 119.96151 * 180.27334 * 9 8 7 30 30 H 1.07999 * 119.93422 * 179.72465 * 10 9 8 31 31 H 1.08000 * 120.04847 * 180.02562 * 13 11 10 32 32 H 1.09005 * 109.46347 * 85.38032 * 15 14 2 33 33 H 1.08997 * 109.46761 * 205.37243 * 15 14 2 34 34 H 1.08991 * 109.47344 * 325.38241 * 15 14 2 35 35 H 0.96999 * 119.99637 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1052 -0.9548 3.5959 8 6 1.2806 -0.9932 4.7130 9 6 1.6736 -1.6941 5.8362 10 6 2.8921 -2.3478 5.8543 11 6 3.7187 -2.3068 4.7453 12 17 5.2472 -3.1294 4.7720 13 6 3.3277 -1.6123 3.6157 14 7 2.0183 -0.6905 -1.1962 15 6 1.6645 -2.0932 -1.4280 16 6 2.8056 -0.0250 -2.0976 17 1 3.4947 0.7333 -1.7562 18 6 2.7181 -0.3250 -3.4500 19 7 1.8012 -1.1661 -3.8795 20 14 3.9012 0.4650 -4.6606 21 1 5.2948 0.0985 -4.3013 22 1 3.6011 -0.0174 -6.0325 23 1 3.7489 1.9412 -4.6099 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5137 0.8900 27 1 1.1962 0.5698 2.5443 28 1 0.3311 -0.4787 4.7018 29 1 1.0306 -1.7278 6.7033 30 1 3.1989 -2.8915 6.7355 31 1 3.9727 -1.5807 2.7500 32 1 0.6969 -2.1459 -1.9272 33 1 2.4231 -2.5602 -2.0560 34 1 1.6100 -2.6167 -0.4737 35 1 1.7398 -1.3754 -4.8246 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060342955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:33 Heat of formation + Delta-G solvation = 10.783976 kcal Electronic energy + Delta-G solvation = -19745.793886 eV Core-core repulsion = 16577.637281 eV Total energy + Delta-G solvation = -3168.156606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33883 -38.50992 -36.49143 -35.48283 -34.39329 -32.15667 -30.76636 -29.93383 -28.69996 -25.93491 -24.38368 -23.14412 -22.66764 -21.27086 -19.45912 -17.87007 -16.94345 -16.36169 -16.21380 -15.24786 -14.99869 -14.74021 -14.42924 -13.85414 -13.66870 -13.47558 -13.26760 -12.78460 -12.45180 -12.04752 -11.80088 -11.68343 -11.50656 -11.30323 -10.94779 -10.91827 -10.81954 -10.65622 -10.39187 -10.19850 -10.02972 -9.95252 -9.14961 -8.77758 -8.52744 -8.10666 -6.67308 -5.78685 -3.33996 1.09193 1.26177 2.12632 3.06688 3.28691 3.38089 3.42532 3.44368 3.69202 4.45751 4.75951 5.00683 5.05341 5.19420 5.31954 5.40377 5.44449 5.45860 5.77022 5.88437 5.92397 6.15308 6.19556 6.25099 6.30277 6.40786 6.49890 6.80432 6.95655 7.04804 7.45374 7.64022 7.73699 7.79028 8.39234 8.63018 9.19691 9.77313 10.31756 11.26849 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.004292 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.822450 B = 6521.781635 C = 7271.359645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.160 3.840 3 H 0.093 0.907 4 C 0.490 3.510 5 O -0.501 6.501 6 N -0.684 5.684 7 C 0.172 3.828 8 C -0.151 4.151 9 C -0.090 4.090 10 C -0.139 4.139 11 C -0.014 4.014 12 Cl -0.072 7.072 13 C -0.117 4.117 14 N -0.567 5.567 15 C 0.163 3.837 16 C -0.268 4.268 17 H 0.063 0.937 18 C 0.016 3.984 19 N -0.899 5.899 20 Si 0.907 3.093 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.281 1.281 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.409 0.591 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.151 0.849 32 H 0.017 0.983 33 H 0.047 0.953 34 H 0.010 0.990 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 1.653 18.706 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.111 0.889 4 C 0.276 3.724 5 O -0.373 6.373 6 N -0.332 5.332 7 C 0.076 3.924 8 C -0.172 4.172 9 C -0.109 4.109 10 C -0.158 4.158 11 C -0.042 4.042 12 Cl -0.043 7.043 13 C -0.138 4.138 14 N -0.287 5.287 15 C 0.018 3.982 16 C -0.398 4.398 17 H 0.081 0.919 18 C -0.184 4.184 19 N -0.541 5.541 20 Si 0.737 3.263 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.207 1.207 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.245 0.755 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.169 0.831 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.642 0.769 18.250 18.340 hybrid contribution 0.456 0.610 -0.638 0.994 sum -1.185 1.379 17.612 17.705 Atomic orbital electron populations 1.22215 0.95974 1.01938 1.01169 1.20290 0.93522 0.96074 0.85468 0.88923 1.23350 0.79372 0.85236 0.84414 1.90640 1.35151 1.25631 1.85840 1.44171 1.57115 1.27473 1.04440 1.17751 0.92041 0.95148 0.87431 1.21031 0.99548 1.02905 0.93688 1.20831 0.95653 0.96520 0.97927 1.20950 0.94780 1.02414 0.97698 1.20755 0.88738 0.98884 0.95791 1.98366 1.29774 1.77538 1.98659 1.21256 0.95940 0.98584 0.98068 1.43541 1.57554 1.08182 1.19425 1.20776 0.98924 0.83113 0.95350 1.19068 1.14745 1.19431 0.86510 0.91945 1.25234 0.97356 0.98713 0.97142 1.70023 1.33586 1.36236 1.14255 0.86313 0.80713 0.79090 0.80227 1.20833 1.21502 1.20709 0.92849 0.91109 0.93842 0.75501 0.85230 0.85022 0.85254 0.83124 0.96444 0.93367 0.97204 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.09 37.16 0.34 -2.22 16 2 C 0.16 3.14 3.13 -69.08 -0.22 2.93 16 3 H 0.09 1.70 7.89 -51.93 -0.41 1.29 16 4 C 0.49 9.11 6.76 -10.98 -0.07 9.04 16 5 O -0.50 -11.31 11.89 5.55 0.07 -11.24 16 6 N -0.68 -9.53 5.20 -9.86 -0.05 -9.58 16 7 C 0.17 2.41 6.29 -83.70 -0.53 1.88 16 8 C -0.15 -1.63 9.97 -39.39 -0.39 -2.03 16 9 C -0.09 -0.89 10.04 -39.61 -0.40 -1.28 16 10 C -0.14 -1.54 9.83 -39.51 -0.39 -1.93 16 11 C -0.01 -0.20 6.32 -39.53 -0.25 -0.45 16 12 Cl -0.07 -0.96 28.95 -51.86 -1.50 -2.46 16 13 C -0.12 -1.84 8.47 -39.36 -0.33 -2.17 16 14 N -0.57 -14.33 2.55 -174.81 -0.45 -14.78 16 15 C 0.16 4.23 7.69 59.85 0.46 4.69 16 16 C -0.27 -7.35 9.46 -15.06 -0.14 -7.49 16 17 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 18 C 0.02 0.43 5.17 -17.43 -0.09 0.34 16 19 N -0.90 -26.09 11.07 55.49 0.61 -25.47 16 20 Si 0.91 21.69 29.56 -169.99 -5.02 16.67 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H 0.05 0.95 7.67 -51.93 -0.40 0.55 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.04 0.53 7.65 -51.93 -0.40 0.13 16 27 H 0.41 4.20 8.36 -40.82 -0.34 3.86 16 28 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.15 2.78 6.26 -52.49 -0.33 2.45 16 32 H 0.02 0.47 7.73 -51.93 -0.40 0.06 16 33 H 0.05 1.37 7.22 -51.93 -0.37 0.99 16 34 H 0.01 0.24 6.16 -51.93 -0.32 -0.08 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -31.99 310.17 -7.89 -39.89 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.21 Total: 1.01 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -2.01 Total: 1.30 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.12 Total: -49.83 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.99 -7.89 -39.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060342955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.669 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds