Wall clock time and date at job start Tue Mar 31 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46988 * 2 1 4 4 C 1.50692 * 109.47487 * 240.00026 * 2 1 3 5 5 O 1.21283 * 120.00093 * 240.00448 * 4 2 1 6 6 N 1.34776 * 120.00225 * 59.99661 * 4 2 1 7 7 C 1.39926 * 120.00398 * 186.27434 * 6 4 2 8 8 C 1.38903 * 120.05882 * 324.54599 * 7 6 4 9 9 C 1.38101 * 119.95364 * 179.72614 * 8 7 6 10 10 C 1.38288 * 120.07966 * 0.56820 * 9 8 7 11 11 C 1.38375 * 120.13138 * 359.70992 * 10 9 8 12 12 Cl 1.73597 * 119.98269 * 180.02562 * 11 10 9 13 13 C 1.38255 * 120.04200 * 359.97438 * 11 10 9 14 14 N 1.46497 * 109.46873 * 119.99300 * 2 1 3 15 15 C 1.46502 * 119.99646 * 60.00447 * 14 2 1 16 16 C 1.36936 * 120.00436 * 239.99976 * 14 2 1 17 17 H 1.07994 * 119.99931 * 38.07906 * 16 14 2 18 18 C 1.38818 * 119.99824 * 218.07056 * 16 14 2 19 19 N 1.31611 * 120.00017 * 26.36158 * 18 16 14 20 20 Si 1.86803 * 119.99805 * 206.07744 * 18 16 14 21 21 H 1.48497 * 109.47050 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46781 * 120.00495 * 20 18 16 23 23 H 1.48499 * 109.47153 * 240.00378 * 20 18 16 24 24 H 1.09000 * 109.47045 * 300.00537 * 1 2 3 25 25 H 1.08998 * 109.46696 * 59.99815 * 1 2 3 26 26 H 1.08996 * 109.47228 * 179.97438 * 1 2 3 27 27 H 0.97002 * 119.99825 * 6.27275 * 6 4 2 28 28 H 1.08004 * 120.02520 * 359.97438 * 8 7 6 29 29 H 1.07993 * 119.96053 * 180.27588 * 9 8 7 30 30 H 1.07997 * 119.93530 * 179.71975 * 10 9 8 31 31 H 1.07995 * 120.04275 * 180.02562 * 13 11 10 32 32 H 1.09000 * 109.47591 * 272.01190 * 15 14 2 33 33 H 1.09001 * 109.47192 * 32.01293 * 15 14 2 34 34 H 1.09002 * 109.47208 * 152.00943 * 15 14 2 35 35 H 0.97005 * 120.00708 * 3.86624 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7069 -0.2500 -2.4545 7 6 2.0614 -0.9806 -3.5940 8 6 3.2601 -1.6818 -3.6258 9 6 3.6052 -2.4068 -4.7494 10 6 2.7644 -2.4260 -5.8471 11 6 1.5722 -1.7241 -5.8213 12 17 0.5194 -1.7515 -7.2013 13 6 1.2184 -1.0018 -4.6968 14 7 2.0183 -0.6905 1.1962 15 6 1.6644 -2.0930 1.4281 16 6 2.8056 -0.0250 2.0976 17 1 2.6061 1.0113 2.3271 18 6 3.8599 -0.6824 2.7166 19 7 4.4384 -1.7041 2.1218 20 14 4.4628 -0.1121 4.3901 21 1 3.6552 1.0511 4.8372 22 1 4.3215 -1.2185 5.3705 23 1 5.8907 0.2841 4.2932 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.2267 0.5879 -2.5457 28 1 3.9199 -1.6632 -2.7709 29 1 4.5350 -2.9555 -4.7725 30 1 3.0388 -2.9901 -6.7263 31 1 0.2878 -0.4543 -4.6765 32 1 0.7191 -2.1448 1.9683 33 1 1.5646 -2.6056 0.4713 34 1 2.4462 -2.5725 2.0172 35 1 4.1659 -1.9626 1.2274 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060342956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:36 Heat of formation + Delta-G solvation = 7.518732 kcal Electronic energy + Delta-G solvation = -19838.551278 eV Core-core repulsion = 16670.253080 eV Total energy + Delta-G solvation = -3168.298197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31469 -38.52837 -36.59951 -35.66302 -34.40245 -32.32540 -30.76622 -29.83523 -28.66409 -26.03819 -24.33305 -22.96594 -22.72974 -21.22197 -19.47678 -17.92334 -17.31878 -16.52675 -16.22124 -15.24019 -14.86758 -14.69205 -14.22126 -13.83069 -13.59176 -13.53147 -13.36432 -13.10129 -12.68561 -12.02962 -11.91210 -11.85350 -11.68250 -11.47798 -11.04079 -11.00602 -10.82031 -10.61190 -10.53037 -10.10967 -10.06271 -9.57233 -9.08483 -8.80574 -8.37180 -8.06621 -6.84321 -6.07290 -3.43972 1.18668 1.21488 1.99366 3.10135 3.32755 3.48176 3.52515 3.64950 3.72915 4.53491 4.77403 4.99224 5.12178 5.21734 5.24267 5.39396 5.41195 5.58914 5.67456 5.76149 5.79805 6.05625 6.10249 6.30276 6.37186 6.39384 6.52867 6.59832 6.71639 6.88885 7.03214 7.30247 7.65653 8.04758 8.54105 8.66641 9.08086 9.77032 10.20617 11.14843 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034795 B = 0.003887 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.517225 B = 7201.196348 C = 7693.262287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.151 3.849 3 H 0.092 0.908 4 C 0.487 3.513 5 O -0.498 6.498 6 N -0.686 5.686 7 C 0.172 3.828 8 C -0.119 4.119 9 C -0.088 4.088 10 C -0.137 4.137 11 C -0.017 4.017 12 Cl -0.078 7.078 13 C -0.149 4.149 14 N -0.565 5.565 15 C 0.118 3.882 16 C -0.373 4.373 17 H 0.055 0.945 18 C -0.011 4.011 19 N -0.895 5.895 20 Si 1.072 2.928 21 H -0.290 1.290 22 H -0.289 1.289 23 H -0.293 1.293 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.406 0.594 28 H 0.148 0.852 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.133 0.867 32 H -0.001 1.001 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 2.418 -14.838 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 H 0.110 0.890 4 C 0.274 3.726 5 O -0.369 6.369 6 N -0.334 5.334 7 C 0.076 3.924 8 C -0.139 4.139 9 C -0.107 4.107 10 C -0.157 4.157 11 C -0.044 4.044 12 Cl -0.049 7.049 13 C -0.170 4.170 14 N -0.285 5.285 15 C -0.027 4.027 16 C -0.502 4.502 17 H 0.072 0.928 18 C -0.218 4.218 19 N -0.531 5.531 20 Si 0.901 3.099 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.220 1.220 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.242 0.758 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.017 0.983 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.498 1.350 -13.475 14.616 hybrid contribution -1.404 0.713 -1.634 2.269 sum -6.902 2.063 -15.109 16.738 Atomic orbital electron populations 1.22168 0.95957 1.01823 1.01258 1.20845 0.93755 0.97174 0.84355 0.89011 1.23582 0.79429 0.85450 0.84136 1.90640 1.34670 1.25892 1.85729 1.44341 1.59342 1.25096 1.04584 1.17795 0.92550 0.95173 0.86914 1.21598 0.95528 0.97636 0.99185 1.21050 0.99419 0.98174 0.92080 1.20960 0.93629 1.01248 0.99845 1.20553 0.93253 1.01449 0.89131 1.98354 1.66183 1.97705 1.42695 1.20727 1.00192 1.03310 0.92813 1.43805 1.57707 1.09686 1.17347 1.21133 0.97731 0.85395 0.98460 1.19905 1.11439 0.98689 1.20193 0.92764 1.26092 0.92449 0.98292 1.04964 1.70609 1.37096 1.29085 1.16322 0.83458 0.75552 0.75481 0.75403 1.21588 1.21505 1.21980 0.91448 0.93364 0.92907 0.75802 0.83412 0.84908 0.85246 0.84947 0.98312 0.94987 0.91683 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.10 37.16 0.34 -2.07 16 2 C 0.15 2.98 3.13 -69.09 -0.22 2.77 16 3 H 0.09 1.75 7.89 -51.93 -0.41 1.34 16 4 C 0.49 9.43 6.76 -10.99 -0.07 9.35 16 5 O -0.50 -11.64 11.88 5.55 0.07 -11.58 16 6 N -0.69 -10.16 5.18 -9.87 -0.05 -10.21 16 7 C 0.17 2.56 6.30 -83.70 -0.53 2.03 16 8 C -0.12 -1.89 8.71 -39.39 -0.34 -2.23 16 9 C -0.09 -1.15 10.04 -39.61 -0.40 -1.55 16 10 C -0.14 -1.63 9.83 -39.51 -0.39 -2.02 16 11 C -0.02 -0.21 6.32 -39.52 -0.25 -0.46 16 12 Cl -0.08 -0.84 28.95 -51.86 -1.50 -2.35 16 13 C -0.15 -1.89 9.75 -39.36 -0.38 -2.27 16 14 N -0.57 -14.01 2.25 -174.81 -0.39 -14.41 16 15 C 0.12 2.91 8.47 59.85 0.51 3.41 16 16 C -0.37 -10.23 9.29 -15.06 -0.14 -10.37 16 17 H 0.05 1.47 7.95 -52.49 -0.42 1.06 16 18 C -0.01 -0.32 4.78 -17.43 -0.08 -0.41 16 19 N -0.89 -27.16 12.34 55.49 0.68 -26.47 16 20 Si 1.07 25.00 29.99 -169.99 -5.10 19.90 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.58 7.72 -51.93 -0.40 0.18 16 26 H 0.05 0.87 7.67 -51.93 -0.40 0.48 16 27 H 0.41 4.57 8.45 -40.82 -0.34 4.23 16 28 H 0.15 2.77 6.20 -52.48 -0.33 2.44 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.03 0.77 6.22 -51.93 -0.32 0.44 16 34 H 0.06 1.80 5.64 -51.93 -0.29 1.50 16 35 H 0.28 8.91 7.24 -40.82 -0.30 8.61 16 LS Contribution 309.82 15.07 4.67 4.67 Total: -1.00 -31.87 309.82 -7.70 -39.57 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.12 Total: 4.69 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.96 Total: -3.82 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.24 Total: -51.09 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.58 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.10 Total: 19.90 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.87 -7.70 -39.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060342956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.091 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds