Wall clock time and date at job start Tue Mar 31 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46599 * 2 1 4 4 C 1.50691 * 109.47398 * 119.99661 * 2 1 3 5 5 H 1.08007 * 120.00241 * 120.00062 * 4 2 1 6 6 C 1.37878 * 120.00381 * 300.00371 * 4 2 1 7 7 N 1.31519 * 119.99630 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00324 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47104 * 90.00161 * 8 6 4 10 10 H 1.48495 * 109.47340 * 210.00140 * 8 6 4 11 11 H 1.48500 * 109.47165 * 329.99948 * 8 6 4 12 12 N 1.46501 * 109.47188 * 240.00400 * 2 1 3 13 13 C 1.46505 * 119.99431 * 299.99434 * 12 2 1 14 14 C 1.34775 * 120.00370 * 119.99619 * 12 2 1 15 15 O 1.21611 * 119.99734 * 4.46435 * 14 12 2 16 16 C 1.47445 * 119.99936 * 184.46114 * 14 12 2 17 17 C 1.39820 * 120.08321 * 309.99260 * 16 14 12 18 18 C 1.36562 * 120.06643 * 180.02562 * 17 16 14 19 19 C 1.39262 * 120.23606 * 359.97312 * 18 17 16 20 20 N 1.39055 * 119.91802 * 180.02562 * 19 18 17 21 21 C 1.39142 * 120.15939 * 359.77263 * 19 18 17 22 22 C 1.37838 * 119.93180 * 0.51092 * 21 19 18 23 23 Cl 1.73603 * 120.11945 * 179.74744 * 22 21 19 24 24 H 1.09003 * 109.46599 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47012 * 299.99962 * 1 2 3 26 26 H 1.08997 * 109.47268 * 60.00354 * 1 2 3 27 27 H 0.96997 * 119.99674 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46845 * 273.15687 * 13 12 2 29 29 H 1.08993 * 109.47078 * 33.15962 * 13 12 2 30 30 H 1.08998 * 109.46615 * 153.16242 * 13 12 2 31 31 H 1.07996 * 119.96498 * 0.04233 * 17 16 14 32 32 H 1.08005 * 119.88018 * 180.02562 * 18 17 16 33 33 H 0.96999 * 120.00280 * 359.97438 * 20 19 18 34 34 H 0.97003 * 119.99684 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.03499 * 180.27130 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.6297 -0.5456 4.4123 10 1 1.3433 -0.9492 5.1120 11 1 2.4861 -2.5661 3.7120 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0834 15 8 3.1540 1.1025 -1.8517 16 6 3.2033 -0.6987 -3.3348 17 6 3.7654 -1.9785 -3.2981 18 6 4.1456 -2.5922 -4.4573 19 6 3.9754 -1.9482 -5.6803 20 7 4.3644 -2.5794 -6.8566 21 6 3.4122 -0.6767 -5.7284 22 6 3.0315 -0.0486 -4.5620 23 17 2.3343 1.5404 -4.6159 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7089 1.1614 3.4843 28 1 2.3849 -2.7376 -0.9242 29 1 0.6667 -2.2860 -1.0340 30 1 1.6787 -2.2993 -2.4982 31 1 3.8986 -2.4822 -2.3522 32 1 4.5790 -3.5809 -4.4255 33 1 4.7541 -3.4671 -6.8247 34 1 4.2468 -2.1317 -7.7091 35 1 3.2772 -0.1809 -6.6783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063084844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:19 Heat of formation + Delta-G solvation = -9.415559 kcal Electronic energy + Delta-G solvation = -19950.706519 eV Core-core repulsion = 16781.673996 eV Total energy + Delta-G solvation = -3169.032523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.96789 -38.29493 -36.35330 -35.18604 -34.52209 -32.71759 -30.88668 -29.81491 -28.32399 -26.09030 -25.15525 -23.18614 -22.84117 -20.94526 -18.76388 -17.35774 -17.23880 -16.72693 -16.09819 -15.51163 -14.74676 -14.62789 -14.38944 -14.03988 -13.68288 -13.49888 -13.30933 -12.53575 -12.34528 -12.18282 -11.90638 -11.55017 -11.48480 -11.25754 -11.00132 -10.78278 -10.69100 -10.61961 -10.30245 -10.17275 -10.10220 -9.10530 -8.90516 -8.81075 -8.36883 -7.69198 -7.46618 -6.01405 -4.09023 1.18738 1.29609 2.30717 3.30837 3.35717 3.37592 3.40012 3.61690 3.83555 4.09835 4.45384 4.77809 4.97036 5.16020 5.29718 5.37545 5.45155 5.69962 5.83703 6.00038 6.13142 6.18457 6.35905 6.39482 6.54143 6.83865 6.90655 7.13020 7.18134 7.44714 7.52379 7.60088 7.77933 8.08332 8.26443 8.60715 8.89953 9.14458 9.57220 11.03883 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025188 B = 0.004941 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.360360 B = 5665.528427 C = 6354.822040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.586 5.586 13 C 0.084 3.916 14 C 0.549 3.451 15 O -0.535 6.535 16 C -0.166 4.166 17 C -0.028 4.028 18 C -0.201 4.201 19 C 0.238 3.762 20 N -0.871 5.871 21 C -0.203 4.203 22 C 0.054 3.946 23 Cl -0.049 7.049 24 H 0.030 0.970 25 H 0.093 0.907 26 H 0.012 0.988 27 H 0.263 0.737 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.400 0.600 34 H 0.399 0.601 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 -8.718 -17.830 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.317 5.317 13 C -0.060 4.060 14 C 0.335 3.665 15 O -0.413 6.413 16 C -0.172 4.172 17 C -0.048 4.048 18 C -0.224 4.224 19 C 0.131 3.869 20 N -0.409 5.409 21 C -0.227 4.227 22 C 0.026 3.974 23 Cl -0.020 7.020 24 H 0.049 0.951 25 H 0.112 0.888 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.229 0.771 34 H 0.227 0.773 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.784 -7.832 -17.494 19.537 hybrid contribution 0.354 -0.669 0.515 0.916 sum 4.138 -8.502 -16.978 19.434 Atomic orbital electron populations 1.22092 0.98248 0.99343 1.00855 1.18939 0.90793 0.94562 0.79815 0.91795 1.21313 1.31639 1.12895 0.90284 0.92321 1.24890 0.94998 0.95006 0.98911 1.69885 1.36445 1.22665 1.23655 0.86504 0.78630 0.79835 0.82448 1.20650 1.21190 1.19967 1.48133 1.48683 1.11566 1.23347 1.21703 1.01430 0.83295 0.99583 1.17956 0.79581 0.86044 0.82897 1.90768 1.55240 1.18125 1.77128 1.19849 1.07755 0.96172 0.93451 1.20872 0.93092 0.92100 0.98715 1.20319 1.09421 1.01760 0.90862 1.17651 0.91320 0.90830 0.87072 1.42335 1.71325 1.21335 1.05909 1.20261 1.09334 0.95584 0.97526 1.20588 0.96426 0.87261 0.93151 1.98400 1.82044 1.22804 1.98715 0.95127 0.88806 0.96926 0.92751 0.93279 0.91185 0.92464 0.84395 0.85403 0.77120 0.77264 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.94 37.16 0.33 -3.27 16 2 C 0.26 6.78 2.63 -69.08 -0.18 6.60 16 3 H 0.06 1.94 6.91 -51.93 -0.36 1.58 16 4 C -0.52 -14.32 8.37 -34.44 -0.29 -14.60 16 5 H 0.06 1.58 7.56 -52.48 -0.40 1.18 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.59 -13.02 2.75 -176.53 -0.49 -13.51 16 13 C 0.08 1.47 8.37 59.85 0.50 1.97 16 14 C 0.55 12.15 6.71 -12.51 -0.08 12.07 16 15 O -0.53 -13.88 15.24 5.27 0.08 -13.80 16 16 C -0.17 -2.90 4.87 -104.92 -0.51 -3.41 16 17 C -0.03 -0.40 7.57 -39.60 -0.30 -0.70 16 18 C -0.20 -2.21 9.82 -39.81 -0.39 -2.60 16 19 C 0.24 2.48 6.75 -83.87 -0.57 1.92 16 20 N -0.87 -5.64 9.06 32.40 0.29 -5.34 16 21 C -0.20 -2.50 9.66 -39.39 -0.38 -2.88 16 22 C 0.05 0.86 6.34 -39.09 -0.25 0.62 16 23 Cl -0.05 -0.83 27.21 -51.86 -1.41 -2.24 16 24 H 0.03 0.69 6.68 -51.93 -0.35 0.34 16 25 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.05 0.81 7.50 -51.93 -0.39 0.42 16 29 H 0.07 1.23 6.44 -51.93 -0.33 0.89 16 30 H 0.06 0.85 5.70 -51.93 -0.30 0.55 16 31 H 0.14 1.84 6.65 -52.49 -0.35 1.49 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 33 H 0.40 1.79 8.83 -40.82 -0.36 1.43 16 34 H 0.40 1.90 8.83 -40.82 -0.36 1.54 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 305.49 15.07 4.60 4.60 Total: -1.00 -32.77 305.49 -7.43 -40.20 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.91 Total: 1.32 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.21 Total: -2.62 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.43 Total: -43.69 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.80 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.41 Total: -2.24 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.77 -7.43 -40.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063084844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.787 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds