Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47156 * 2 1 4 4 C 1.50693 * 109.47278 * 120.00538 * 2 1 3 5 5 H 1.08008 * 120.00307 * 114.27830 * 4 2 1 6 6 C 1.37876 * 119.99825 * 294.27794 * 4 2 1 7 7 N 1.31521 * 119.99929 * 159.15952 * 6 4 2 8 8 Si 1.86797 * 120.00195 * 339.43041 * 6 4 2 9 9 H 1.48497 * 109.47597 * 179.72726 * 8 6 4 10 10 H 1.48508 * 109.46991 * 299.72522 * 8 6 4 11 11 H 1.48495 * 109.47191 * 59.72463 * 8 6 4 12 12 N 1.46509 * 109.47077 * 240.00444 * 2 1 3 13 13 C 1.46503 * 119.99615 * 300.00230 * 12 2 1 14 14 C 1.34776 * 120.00105 * 119.99775 * 12 2 1 15 15 O 1.21588 * 119.99974 * 0.02562 * 14 12 2 16 16 N 1.34773 * 119.99991 * 180.02562 * 14 12 2 17 17 C 1.39995 * 119.99809 * 185.04924 * 16 14 12 18 18 C 1.38859 * 120.05480 * 212.33868 * 17 16 14 19 19 C 1.38120 * 119.94366 * 179.77113 * 18 17 16 20 20 C 1.38381 * 120.05316 * 0.50236 * 19 18 17 21 21 Cl 1.73599 * 119.94154 * 179.72312 * 20 19 18 22 22 C 1.38382 * 120.11474 * 359.75579 * 20 19 18 23 23 C 1.38109 * 120.05760 * 359.97438 * 22 20 19 24 24 H 1.08996 * 109.46933 * 294.14694 * 1 2 3 25 25 H 1.09005 * 109.47298 * 54.14758 * 1 2 3 26 26 H 1.09001 * 109.47556 * 174.14633 * 1 2 3 27 27 H 0.96998 * 119.99903 * 355.21046 * 7 6 4 28 28 H 1.09001 * 109.47438 * 90.00076 * 13 12 2 29 29 H 1.09006 * 109.46445 * 209.99625 * 13 12 2 30 30 H 1.08994 * 109.46883 * 329.99570 * 13 12 2 31 31 H 0.97000 * 120.00143 * 5.04342 * 16 14 12 32 32 H 1.08000 * 120.03041 * 0.02562 * 18 17 16 33 33 H 1.07994 * 119.96873 * 180.23236 * 19 18 17 34 34 H 1.07997 * 119.97118 * 179.97438 * 22 20 19 35 35 H 1.08003 * 120.03312 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5749 -1.6394 1.1339 6 6 1.7992 -0.1748 2.4792 7 7 1.8534 -0.9434 3.5450 8 14 1.3990 1.6412 2.6567 9 1 1.1864 1.9634 4.0906 10 1 2.5271 2.4505 2.1295 11 1 0.1656 1.9534 1.8910 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.0872 1.1284 -1.8907 16 7 3.2419 -0.6706 -3.1842 17 6 4.1316 -0.0249 -4.0510 18 6 4.0952 -0.2949 -5.4126 19 6 4.9709 0.3470 -6.2663 20 6 5.8910 1.2507 -5.7644 21 17 6.9950 2.0504 -6.8391 22 6 5.9328 1.5174 -4.4072 23 6 5.0557 0.8824 -3.5500 24 1 -0.3633 0.4204 0.9377 25 1 -0.3634 0.6019 -0.8330 26 1 -0.3634 -1.0223 -0.1048 27 1 1.9884 -1.8990 3.4475 28 1 0.7374 -2.1443 -1.9995 29 1 2.4628 -2.5818 -1.9866 30 1 1.5294 -2.5968 -0.4710 31 1 2.9485 -1.5751 -3.3758 32 1 3.3801 -1.0030 -5.8043 33 1 4.9405 0.1402 -7.3258 34 1 6.6521 2.2228 -4.0179 35 1 5.0890 1.0906 -2.4907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094755.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = -0.967506 kcal Electronic energy + Delta-G solvation = -19632.426027 eV Core-core repulsion = 16463.759838 eV Total energy + Delta-G solvation = -3168.666188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50238 -38.75910 -36.61334 -35.69200 -34.48693 -32.80525 -31.09961 -30.43689 -28.75030 -26.39285 -24.84181 -23.25779 -22.76319 -20.99326 -19.26747 -18.09936 -17.59486 -17.13075 -16.54093 -15.61462 -15.16421 -14.78126 -14.21637 -13.79183 -13.65884 -13.52933 -13.31886 -12.90340 -12.71719 -12.37937 -12.02981 -11.90364 -11.84884 -11.62438 -11.46840 -11.36027 -10.90594 -10.54163 -10.14002 -10.03141 -9.80982 -9.58366 -9.16421 -9.05399 -8.39134 -8.10850 -7.78098 -6.55240 -4.19370 1.10722 1.26910 2.10206 2.94100 3.36907 3.38987 3.47000 3.61218 3.82340 4.25476 4.43875 4.73307 4.82237 5.12870 5.20840 5.32741 5.38314 5.49272 5.75341 5.84650 5.95922 6.07855 6.22781 6.23956 6.30074 6.37495 6.46788 6.53249 6.81228 6.88414 6.97068 7.31063 7.46726 7.82678 8.26191 8.34259 8.73770 8.96468 9.46948 10.80540 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029750 B = 0.003847 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.957675 B = 7277.019037 C = 7786.746161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.250 3.750 3 H 0.057 0.943 4 C -0.617 4.617 5 H 0.062 0.938 6 C 0.043 3.957 7 N -0.895 5.895 8 Si 1.032 2.968 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.274 1.274 12 N -0.596 5.596 13 C 0.082 3.918 14 C 0.697 3.303 15 O -0.578 6.578 16 N -0.693 5.693 17 C 0.188 3.812 18 C -0.147 4.147 19 C -0.090 4.090 20 C -0.062 4.062 21 Cl -0.082 7.082 22 C -0.087 4.087 23 C -0.111 4.111 24 H 0.064 0.936 25 H 0.026 0.974 26 H 0.046 0.954 27 H 0.269 0.731 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.405 0.595 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -0.785 -18.536 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.148 3.852 3 H 0.075 0.925 4 C -0.655 4.655 5 H 0.080 0.920 6 C -0.164 4.164 7 N -0.528 5.528 8 Si 0.860 3.140 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.200 1.200 12 N -0.330 5.330 13 C -0.062 4.062 14 C 0.399 3.601 15 O -0.456 6.456 16 N -0.342 5.342 17 C 0.091 3.909 18 C -0.169 4.169 19 C -0.109 4.109 20 C -0.090 4.090 21 Cl -0.054 7.054 22 C -0.107 4.107 23 C -0.132 4.132 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.242 0.758 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.856 1.267 -17.207 17.680 hybrid contribution 0.195 -1.823 -1.329 2.265 sum 4.051 -0.556 -18.537 18.982 Atomic orbital electron populations 1.22477 0.98632 1.00279 1.00290 1.19153 0.90226 0.94553 0.81279 0.92523 1.22127 1.41352 1.11109 0.90897 0.91997 1.25641 0.93406 1.05650 0.91721 1.70871 1.43739 1.06778 1.31365 0.84217 0.77682 0.75891 0.76239 1.20891 1.20410 1.20044 1.47324 1.51193 1.11533 1.22951 1.21597 0.98472 0.83075 1.03006 1.15969 0.79722 0.84871 0.79567 1.90882 1.62657 1.15240 1.76802 1.42993 1.48066 1.18490 1.24634 1.17661 0.89592 0.94817 0.88811 1.20765 1.01547 1.03637 0.90914 1.20721 0.94490 0.95666 1.00005 1.20814 0.96756 1.00265 0.91147 1.98346 1.62529 1.79384 1.65108 1.20949 0.99168 0.99647 0.90894 1.21322 0.93001 0.97132 1.01765 0.91689 0.95493 0.93468 0.92093 0.93595 0.93166 0.89387 0.75780 0.85025 0.84915 0.84804 0.83250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.98 37.16 0.33 -3.02 16 2 C 0.25 5.89 2.23 -69.08 -0.15 5.73 16 3 H 0.06 1.47 5.50 -51.93 -0.29 1.18 16 4 C -0.62 -16.52 8.33 -34.44 -0.29 -16.81 16 5 H 0.06 1.76 7.37 -52.48 -0.39 1.37 16 6 C 0.04 1.19 5.25 -17.82 -0.09 1.10 16 7 N -0.89 -26.36 13.70 55.43 0.76 -25.61 16 8 Si 1.03 24.86 26.38 -169.99 -4.48 20.37 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.09 5.95 56.52 0.34 -5.75 16 12 N -0.60 -11.93 2.75 -181.01 -0.50 -12.43 16 13 C 0.08 1.27 9.03 59.85 0.54 1.81 16 14 C 0.70 13.72 8.03 -86.92 -0.70 13.03 16 15 O -0.58 -13.39 13.30 5.29 0.07 -13.32 16 16 N -0.69 -10.32 5.18 -14.22 -0.07 -10.39 16 17 C 0.19 2.69 6.30 -83.67 -0.53 2.16 16 18 C -0.15 -1.66 9.96 -39.39 -0.39 -2.05 16 19 C -0.09 -0.96 9.82 -39.57 -0.39 -1.35 16 20 C -0.06 -0.74 6.32 -39.48 -0.25 -0.99 16 21 Cl -0.08 -0.89 28.95 -51.86 -1.50 -2.39 16 22 C -0.09 -1.14 9.82 -39.58 -0.39 -1.53 16 23 C -0.11 -1.71 8.66 -39.40 -0.34 -2.05 16 24 H 0.06 1.43 5.20 -51.93 -0.27 1.16 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.93 7.48 -51.93 -0.39 0.54 16 27 H 0.27 7.83 8.73 -40.82 -0.36 7.48 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 30 H 0.09 1.52 6.91 -51.93 -0.36 1.16 16 31 H 0.41 4.68 6.62 -40.82 -0.27 4.41 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.15 2.66 6.35 -52.48 -0.33 2.33 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -31.14 304.20 -7.75 -38.88 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -3.96 Total: 4.27 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.64 Total: -3.97 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.19 Total: -48.43 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.07 Total: -13.32 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -4.48 Total: 20.37 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.14 -7.75 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094755.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.916 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds