Wall clock time and date at job start Tue Mar 31 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46714 * 2 1 4 4 C 1.50700 * 109.47260 * 240.00088 * 2 1 3 5 5 H 1.07995 * 120.00286 * 240.00243 * 4 2 1 6 6 C 1.37877 * 120.00041 * 59.99587 * 4 2 1 7 7 N 1.31517 * 120.00160 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00123 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46921 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46813 * 300.00086 * 8 6 4 11 11 H 1.48495 * 109.46869 * 60.00168 * 8 6 4 12 12 N 1.46497 * 109.46789 * 119.99902 * 2 1 3 13 13 C 1.46495 * 120.00043 * 60.00595 * 12 2 1 14 14 C 1.34773 * 119.99786 * 239.99478 * 12 2 1 15 15 O 1.21590 * 120.00458 * 0.02562 * 14 12 2 16 16 N 1.34780 * 120.00141 * 180.02562 * 14 12 2 17 17 C 1.39996 * 120.00140 * 175.41581 * 16 14 12 18 18 C 1.38856 * 120.05459 * 214.81282 * 17 16 14 19 19 C 1.38115 * 119.94315 * 179.77143 * 18 17 16 20 20 C 1.38380 * 120.05250 * 0.50616 * 19 18 17 21 21 Cl 1.73603 * 119.94122 * 179.72298 * 20 19 18 22 22 C 1.38384 * 120.11847 * 359.74884 * 20 19 18 23 23 C 1.38111 * 120.05179 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.46901 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47033 * 300.00361 * 1 2 3 26 26 H 1.09003 * 109.46829 * 59.99885 * 1 2 3 27 27 H 0.97002 * 120.00468 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47557 * 89.99572 * 13 12 2 29 29 H 1.09003 * 109.46981 * 209.99517 * 13 12 2 30 30 H 1.09004 * 109.47455 * 329.99379 * 13 12 2 31 31 H 0.97001 * 119.99770 * 355.41565 * 16 14 12 32 32 H 1.08000 * 120.02868 * 0.02562 * 18 17 16 33 33 H 1.07997 * 119.97417 * 180.23224 * 19 18 17 34 34 H 1.07991 * 119.97431 * 179.97438 * 22 20 19 35 35 H 1.07998 * 120.03048 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.8270 -0.4199 -5.2204 10 1 3.8065 -1.1208 -4.0082 11 1 1.8259 -2.5202 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0867 1.1286 1.8911 16 7 3.2429 -0.6710 3.1835 17 6 4.1251 -0.0219 4.0554 18 6 5.1170 -0.7437 4.7059 19 6 5.9891 -0.1001 5.5619 20 6 5.8683 1.2611 5.7796 21 17 6.9615 2.0659 6.8617 22 6 4.8773 1.9819 5.1367 23 6 4.0057 1.3438 4.2761 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7095 1.1618 -3.4844 28 1 2.4158 -2.7377 0.9716 29 1 1.6238 -2.2852 2.5002 30 1 0.6904 -2.3002 0.9846 31 1 2.9552 -1.5782 3.3713 32 1 5.2090 -1.8068 4.5394 33 1 6.7631 -0.6604 6.0652 34 1 4.7849 3.0441 5.3086 35 1 3.2321 1.9066 3.7748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:56 Heat of formation + Delta-G solvation = 0.240508 kcal Electronic energy + Delta-G solvation = -19552.265345 eV Core-core repulsion = 16383.651540 eV Total energy + Delta-G solvation = -3168.613805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38217 -38.65177 -36.54599 -35.53491 -34.37033 -32.79727 -31.03336 -29.87825 -28.46444 -26.26691 -25.24660 -23.17773 -22.70500 -21.02939 -19.25852 -18.04582 -17.13435 -16.61834 -16.25808 -15.33548 -15.23014 -14.65608 -14.29997 -14.05327 -13.54680 -13.49911 -13.20801 -12.74643 -12.66934 -12.28257 -11.80238 -11.65866 -11.58506 -11.46748 -11.09177 -10.87422 -10.85715 -10.74790 -10.31240 -10.19725 -9.96273 -9.42940 -9.21614 -8.97879 -8.46454 -8.03922 -7.60691 -6.10639 -4.18795 1.16989 1.33257 2.14960 3.06403 3.25966 3.31498 3.33848 3.50456 3.90600 4.30850 4.44891 4.80279 4.88488 5.20451 5.27854 5.40070 5.44314 5.57473 5.90136 5.93027 6.02803 6.14840 6.28899 6.32991 6.54242 6.67026 6.74649 6.93267 7.06031 7.08067 7.39234 7.64144 7.74732 8.00500 8.15995 8.53891 8.81271 9.10088 9.48075 10.94690 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030825 B = 0.003517 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.136564 B = 7960.371973 C = 8065.058804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.602 5.602 13 C 0.086 3.914 14 C 0.696 3.304 15 O -0.577 6.577 16 N -0.696 5.696 17 C 0.187 3.813 18 C -0.146 4.146 19 C -0.091 4.091 20 C -0.062 4.062 21 Cl -0.084 7.084 22 C -0.090 4.090 23 C -0.111 4.111 24 H 0.030 0.970 25 H 0.012 0.988 26 H 0.095 0.905 27 H 0.264 0.736 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.404 0.596 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -4.335 15.876 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.336 5.336 13 C -0.058 4.058 14 C 0.398 3.602 15 O -0.455 6.455 16 N -0.345 5.345 17 C 0.090 3.910 18 C -0.167 4.167 19 C -0.110 4.110 20 C -0.089 4.089 21 Cl -0.055 7.055 22 C -0.109 4.109 23 C -0.131 4.131 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.241 0.759 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.369 -3.326 15.533 16.768 hybrid contribution 0.300 -1.036 -0.761 1.320 sum 5.669 -4.362 14.772 16.413 Atomic orbital electron populations 1.22125 0.98161 0.99404 1.00981 1.18921 0.90673 0.94332 0.78846 0.91643 1.21281 1.31997 1.13106 0.90283 0.92345 1.24881 0.94909 0.94973 0.98946 1.69863 1.36244 1.22505 1.23955 0.86539 0.79263 0.79535 0.81949 1.21129 1.20243 1.20240 1.47630 1.50623 1.11599 1.23765 1.21522 1.02272 0.83461 0.98525 1.15991 0.79699 0.85105 0.79406 1.90870 1.62405 1.15236 1.76965 1.43024 1.48743 1.18719 1.24001 1.17671 0.90167 0.92416 0.90747 1.20812 0.94867 1.00477 1.00535 1.20720 0.99358 0.92355 0.98608 1.20823 0.96085 0.93172 0.98842 1.98344 1.63428 1.80065 1.63665 1.20963 0.93847 1.00257 0.95850 1.21426 1.00735 0.93884 0.97093 0.95081 0.96884 0.88627 0.92561 0.93115 0.93672 0.90267 0.75878 0.85027 0.84973 0.84889 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.95 37.16 0.33 -3.10 16 2 C 0.27 6.78 2.64 -69.08 -0.18 6.60 16 3 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -14.02 8.37 -34.44 -0.29 -14.31 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.60 -12.37 2.75 -181.00 -0.50 -12.87 16 13 C 0.09 1.34 9.48 59.84 0.57 1.91 16 14 C 0.70 14.12 8.13 -86.92 -0.71 13.41 16 15 O -0.58 -13.86 13.11 5.29 0.07 -13.79 16 16 N -0.70 -10.62 5.22 -14.22 -0.07 -10.69 16 17 C 0.19 2.74 6.30 -83.67 -0.53 2.21 16 18 C -0.15 -1.72 9.97 -39.40 -0.39 -2.11 16 19 C -0.09 -1.02 9.82 -39.57 -0.39 -1.41 16 20 C -0.06 -0.76 6.32 -39.48 -0.25 -1.01 16 21 Cl -0.08 -0.93 28.95 -51.86 -1.50 -2.43 16 22 C -0.09 -1.19 9.82 -39.57 -0.39 -1.58 16 23 C -0.11 -1.71 8.70 -39.40 -0.34 -2.05 16 24 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.52 6.30 -51.93 -0.33 0.19 16 30 H 0.08 1.25 6.43 -51.93 -0.33 0.92 16 31 H 0.40 4.80 6.52 -40.82 -0.27 4.53 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.15 2.67 6.22 -52.49 -0.33 2.34 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -30.29 307.51 -8.35 -38.64 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -3.92 Total: 4.60 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.66 Total: 0.24 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.06 Total: -47.67 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.07 Total: -13.79 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.29 -8.35 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.880 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds