Wall clock time and date at job start Tue Mar 31 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46714 * 2 1 4 4 C 1.50700 * 109.47260 * 240.00088 * 2 1 3 5 5 H 1.07995 * 120.00286 * 240.00243 * 4 2 1 6 6 C 1.37877 * 120.00041 * 59.99587 * 4 2 1 7 7 N 1.31517 * 120.00160 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00123 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46921 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46813 * 300.00086 * 8 6 4 11 11 H 1.48495 * 109.46869 * 60.00168 * 8 6 4 12 12 N 1.46497 * 109.46789 * 119.99902 * 2 1 3 13 13 C 1.46495 * 120.00043 * 60.00595 * 12 2 1 14 14 C 1.34773 * 119.99786 * 239.99478 * 12 2 1 15 15 O 1.21590 * 120.00458 * 0.02562 * 14 12 2 16 16 N 1.34780 * 120.00141 * 180.02562 * 14 12 2 17 17 C 1.39996 * 120.00140 * 175.41581 * 16 14 12 18 18 C 1.38856 * 120.05459 * 214.81282 * 17 16 14 19 19 C 1.38115 * 119.94315 * 179.77143 * 18 17 16 20 20 C 1.38380 * 120.05250 * 0.50616 * 19 18 17 21 21 Cl 1.73603 * 119.94122 * 179.72298 * 20 19 18 22 22 C 1.38384 * 120.11847 * 359.74884 * 20 19 18 23 23 C 1.38111 * 120.05179 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.46901 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47033 * 300.00361 * 1 2 3 26 26 H 1.09003 * 109.46829 * 59.99885 * 1 2 3 27 27 H 0.97002 * 120.00468 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47557 * 89.99572 * 13 12 2 29 29 H 1.09003 * 109.46981 * 209.99517 * 13 12 2 30 30 H 1.09004 * 109.47455 * 329.99379 * 13 12 2 31 31 H 0.97001 * 119.99770 * 355.41565 * 16 14 12 32 32 H 1.08000 * 120.02868 * 0.02562 * 18 17 16 33 33 H 1.07997 * 119.97417 * 180.23224 * 19 18 17 34 34 H 1.07991 * 119.97431 * 179.97438 * 22 20 19 35 35 H 1.07998 * 120.03048 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.8270 -0.4199 -5.2204 10 1 3.8065 -1.1208 -4.0082 11 1 1.8259 -2.5202 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0867 1.1286 1.8911 16 7 3.2429 -0.6710 3.1835 17 6 4.1251 -0.0219 4.0554 18 6 5.1170 -0.7437 4.7059 19 6 5.9891 -0.1001 5.5619 20 6 5.8683 1.2611 5.7796 21 17 6.9615 2.0659 6.8617 22 6 4.8773 1.9819 5.1367 23 6 4.0057 1.3438 4.2761 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7095 1.1618 -3.4844 28 1 2.4158 -2.7377 0.9716 29 1 1.6238 -2.2852 2.5002 30 1 0.6904 -2.3002 0.9846 31 1 2.9552 -1.5782 3.3713 32 1 5.2090 -1.8068 4.5394 33 1 6.7631 -0.6604 6.0652 34 1 4.7849 3.0441 5.3086 35 1 3.2321 1.9066 3.7748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:55 Heat of formation + Delta-G solvation = -17.492931 kcal Electronic energy + Delta-G solvation = -19553.034325 eV Core-core repulsion = 16383.651540 eV Total energy + Delta-G solvation = -3169.382784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74296 -39.87228 -37.63427 -37.10020 -35.77283 -34.63527 -32.04031 -31.54464 -29.77383 -27.67618 -27.26731 -24.43719 -23.84026 -22.52218 -20.79400 -19.39086 -18.60753 -18.11953 -17.67429 -16.96084 -16.63281 -16.19284 -15.74332 -15.17559 -15.02099 -14.56178 -14.44647 -14.39838 -14.06379 -13.49958 -13.37950 -13.01430 -12.93935 -12.84026 -12.70669 -12.60859 -12.45669 -12.17110 -12.11779 -11.81120 -11.26185 -11.15917 -10.93435 -10.51127 -10.01033 -9.48037 -8.95228 -8.13736 -6.30241 0.11748 0.32964 1.18532 1.42457 1.44810 1.51900 1.69904 2.11442 2.42382 2.73255 3.04077 3.14492 3.84976 3.95057 4.26415 4.31927 4.37160 4.53788 4.62446 4.75644 4.89085 4.92152 4.99962 5.05242 5.05690 5.24439 5.27421 5.41481 5.47572 5.55541 5.66867 5.91249 5.98059 6.14929 6.23400 6.77051 7.05392 7.36783 7.59638 8.90314 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030825 B = 0.003517 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.136564 B = 7960.371973 C = 8065.058804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.278 3.722 3 H 0.011 0.989 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.261 1.261 12 N -0.610 5.610 13 C 0.081 3.919 14 C 0.691 3.309 15 O -0.625 6.625 16 N -0.675 5.675 17 C 0.161 3.839 18 C -0.129 4.129 19 C -0.084 4.084 20 C -0.063 4.063 21 Cl -0.070 7.070 22 C -0.096 4.096 23 C -0.134 4.134 24 H 0.050 0.950 25 H 0.020 0.980 26 H 0.069 0.931 27 H 0.265 0.735 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.422 0.578 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 -7.013 17.191 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.176 3.824 3 H 0.029 0.971 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.186 1.186 12 N -0.344 5.344 13 C -0.061 4.061 14 C 0.392 3.608 15 O -0.506 6.506 16 N -0.325 5.325 17 C 0.065 3.935 18 C -0.150 4.150 19 C -0.103 4.103 20 C -0.091 4.091 21 Cl -0.041 7.041 22 C -0.115 4.115 23 C -0.155 4.155 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.263 0.737 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.158 0.842 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.685 -6.065 16.908 19.166 hybrid contribution -0.029 -0.148 -1.037 1.048 sum 6.656 -6.213 15.871 18.297 Atomic orbital electron populations 1.21907 0.97017 1.00277 1.00034 1.18469 0.91458 0.91967 0.80499 0.97138 1.21560 1.31980 1.13153 0.91137 0.92113 1.25714 0.95071 0.95634 1.01958 1.70011 1.37266 1.23813 1.24510 0.85523 0.78321 0.79052 0.78190 1.20989 1.20445 1.18583 1.47469 1.50857 1.13414 1.22668 1.21795 1.02249 0.80417 1.01642 1.16173 0.79548 0.84652 0.80377 1.90844 1.64004 1.17542 1.78242 1.42626 1.48366 1.19125 1.22431 1.17917 0.91472 0.92411 0.91716 1.21117 0.93092 1.01872 0.98931 1.21121 0.99467 0.91931 0.97801 1.20974 0.95694 0.93859 0.98527 1.98352 1.62740 1.79998 1.63052 1.21014 0.93971 1.00822 0.95735 1.21259 1.01153 0.94691 0.98364 0.93125 0.96070 0.91281 0.92622 0.92356 0.89221 0.90449 0.73738 0.81653 0.81746 0.84198 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 8.95 71.98 0.64 -5.67 16 2 C 0.28 14.29 2.64 44.25 0.12 14.41 16 3 H 0.01 0.66 6.90 -2.39 -0.02 0.64 16 4 C -0.54 -28.98 8.37 25.60 0.21 -28.77 16 5 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -52.52 11.32 21.45 0.24 -52.27 16 8 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 12 N -0.61 -25.12 2.75 -844.83 -2.33 -27.45 16 13 C 0.08 2.35 9.48 127.77 1.21 3.57 16 14 C 0.69 28.49 8.13 179.05 1.45 29.94 16 15 O -0.63 -31.77 13.11 -4.00 -0.05 -31.83 16 16 N -0.67 -19.82 5.22 -317.15 -1.65 -21.48 16 17 C 0.16 4.55 6.30 38.13 0.24 4.79 16 18 C -0.13 -2.63 9.97 22.39 0.22 -2.41 16 19 C -0.08 -1.60 9.82 22.27 0.22 -1.38 16 20 C -0.06 -1.42 6.32 22.34 0.14 -1.28 16 21 Cl -0.07 -1.40 28.95 -2.72 -0.08 -1.48 16 22 C -0.10 -2.54 9.82 22.27 0.22 -2.32 16 23 C -0.13 -4.25 8.70 22.39 0.19 -4.05 16 24 H 0.05 2.13 6.66 -2.39 -0.02 2.12 16 25 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.09 1.76 6.30 -2.39 -0.02 1.75 16 30 H 0.08 2.28 6.43 -2.38 -0.02 2.26 16 31 H 0.42 8.82 6.52 -92.71 -0.60 8.21 16 32 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.14 3.33 8.06 -2.92 -0.02 3.30 16 35 H 0.12 4.57 6.22 -2.91 -0.02 4.55 16 Total: -1.00 -69.18 307.51 4.00 -65.17 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.52 Total: 16.54 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 5.33 Total: 8.13 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -3.74 Total: -101.20 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.05 Total: -31.83 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -69.18 4.00 -65.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.679 kcal (2) G-P(sol) polarization free energy of solvation -69.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds