Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46916 * 2 1 4 4 C 1.50701 * 109.47036 * 120.00039 * 2 1 3 5 5 H 1.08000 * 119.99955 * 120.00254 * 4 2 1 6 6 C 1.37874 * 119.99979 * 299.99922 * 4 2 1 7 7 N 1.31509 * 120.00263 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 120.00082 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47354 * 89.99689 * 8 6 4 10 10 H 1.48501 * 109.47093 * 210.00121 * 8 6 4 11 11 H 1.48501 * 109.46946 * 329.99383 * 8 6 4 12 12 N 1.46501 * 109.47183 * 240.00111 * 2 1 3 13 13 C 1.46498 * 119.99833 * 299.99629 * 12 2 1 14 14 C 1.34773 * 120.00078 * 119.99885 * 12 2 1 15 15 O 1.21585 * 119.99954 * 0.02562 * 14 12 2 16 16 N 1.34778 * 119.99914 * 180.02562 * 14 12 2 17 17 C 1.40005 * 119.99536 * 184.46055 * 16 14 12 18 18 C 1.38842 * 120.07637 * 325.29384 * 17 16 14 19 19 C 1.38121 * 119.94481 * 179.97438 * 18 17 16 20 20 C 1.38291 * 120.08875 * 0.02562 * 19 18 17 21 21 C 1.38261 * 120.15097 * 359.97438 * 20 19 18 22 22 C 1.38229 * 120.05427 * 0.02562 * 21 20 19 23 23 Cl 1.73605 * 120.04417 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47617 * 60.00357 * 1 2 3 25 25 H 1.09001 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47590 * 299.99816 * 1 2 3 27 27 H 0.97001 * 120.00333 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.47426 * 270.00356 * 13 12 2 29 29 H 1.09005 * 109.47374 * 30.00441 * 13 12 2 30 30 H 1.09000 * 109.47343 * 149.99777 * 13 12 2 31 31 H 0.97001 * 119.99754 * 4.45661 * 16 14 12 32 32 H 1.08002 * 120.02713 * 359.97041 * 18 17 16 33 33 H 1.07992 * 119.95673 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.92409 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.97031 * 179.72244 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1379 -0.8590 3.5565 8 14 0.6247 1.2791 2.6541 9 1 -0.8029 0.8727 2.6997 10 1 0.9758 1.9951 3.9068 11 1 0.8470 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0833 15 8 3.0872 1.1283 -1.8907 16 7 3.2420 -0.6708 -3.1840 17 6 4.1221 -0.0206 -4.0574 18 6 4.0064 1.3462 -4.2719 19 6 4.8765 1.9850 -5.1336 20 6 5.8623 1.2648 -5.7833 21 6 5.9809 -0.0964 -5.5726 22 6 5.1134 -0.7419 -4.7114 23 17 5.2623 -2.4513 -4.4475 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9033 -0.5278 4.4375 28 1 2.4157 -2.7376 -0.9716 29 1 0.6904 -2.3002 -0.9846 30 1 1.6238 -2.2853 -2.5001 31 1 2.9552 -1.5784 -3.3710 32 1 3.2366 1.9095 -3.7653 33 1 4.7869 3.0482 -5.3003 34 1 6.5415 1.7671 -6.4563 35 1 6.7490 -0.6568 -6.0850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = 10.117180 kcal Electronic energy + Delta-G solvation = -19924.919026 eV Core-core repulsion = 16756.733506 eV Total energy + Delta-G solvation = -3168.185520 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48147 -38.72033 -36.48361 -35.82990 -34.55902 -32.73193 -30.75675 -30.60919 -28.92126 -26.39295 -25.14315 -23.33877 -22.65111 -21.16391 -19.27003 -18.18089 -17.28635 -16.54057 -16.44002 -15.62553 -15.34591 -14.68312 -14.49656 -14.13480 -13.74779 -13.53079 -13.25230 -12.99459 -12.57333 -12.26766 -12.17283 -11.84771 -11.67305 -11.63475 -11.49326 -11.21500 -10.96773 -10.70632 -10.28294 -10.16789 -9.68796 -9.51437 -9.31014 -8.80448 -8.65345 -8.16932 -7.72686 -6.15909 -4.16913 1.12420 1.30111 2.07873 2.95148 3.21902 3.36043 3.38079 3.45983 3.83234 4.26289 4.33468 4.76278 4.94969 5.15508 5.19493 5.34645 5.40524 5.49626 5.80979 5.87115 6.08966 6.14465 6.18353 6.21088 6.28375 6.41586 6.42932 6.55432 6.76595 6.80275 6.97901 7.26525 7.45215 7.59329 8.28271 8.45164 8.84958 8.97781 9.44495 10.96852 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025321 B = 0.004761 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.545912 B = 5880.183334 C = 6402.873419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.244 3.756 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.596 5.596 13 C 0.086 3.914 14 C 0.702 3.298 15 O -0.579 6.579 16 N -0.691 5.691 17 C 0.191 3.809 18 C -0.112 4.112 19 C -0.096 4.096 20 C -0.136 4.136 21 C -0.093 4.093 22 C -0.073 4.073 23 Cl -0.071 7.071 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.266 0.734 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.406 0.594 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.861 -0.348 -19.052 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.142 3.858 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.329 5.329 13 C -0.058 4.058 14 C 0.404 3.596 15 O -0.456 6.456 16 N -0.340 5.340 17 C 0.093 3.907 18 C -0.133 4.133 19 C -0.115 4.115 20 C -0.155 4.155 21 C -0.112 4.112 22 C -0.103 4.103 23 Cl -0.042 7.042 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.244 0.756 32 H 0.170 0.830 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.998 0.287 -18.540 18.783 hybrid contribution -0.670 -0.103 0.304 0.743 sum 2.328 0.184 -18.236 18.385 Atomic orbital electron populations 1.22484 0.99056 1.01127 0.99385 1.19260 0.89777 0.94995 0.81719 0.91699 1.21157 1.32765 1.14336 0.88435 0.90335 1.24854 0.95678 0.96570 0.95580 1.69869 1.45115 1.40192 0.97981 0.86920 0.80388 0.83843 0.77565 1.20383 1.22103 1.18757 1.47178 1.50913 1.11756 1.23083 1.21570 1.02549 0.82984 0.98680 1.15856 0.79494 0.84964 0.79301 1.90855 1.62433 1.15291 1.77061 1.42941 1.48526 1.18853 1.23711 1.17324 0.89862 0.92188 0.91318 1.21446 1.01376 0.92701 0.97786 1.21170 0.94615 1.00201 0.95513 1.21025 0.99689 0.93295 1.01491 1.20808 0.98128 0.94798 0.97515 1.20765 0.99028 0.85404 1.05109 1.98355 1.97371 1.12502 1.95995 0.94716 0.92494 0.92972 0.92402 0.92493 0.90131 0.93498 0.75577 0.83032 0.85281 0.85355 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.65 37.16 0.32 -3.09 16 2 C 0.24 5.83 2.23 -69.08 -0.15 5.67 16 3 H 0.07 1.72 5.96 -51.93 -0.31 1.41 16 4 C -0.53 -14.54 8.95 -34.44 -0.31 -14.85 16 5 H 0.08 2.34 7.89 -52.49 -0.41 1.93 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 8 Si 0.88 21.62 24.37 -169.99 -4.14 17.48 16 9 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 12 N -0.60 -12.18 2.75 -181.01 -0.50 -12.67 16 13 C 0.09 1.38 9.48 59.85 0.57 1.95 16 14 C 0.70 14.20 8.13 -86.92 -0.71 13.50 16 15 O -0.58 -13.48 13.09 5.29 0.07 -13.41 16 16 N -0.69 -11.16 4.93 -14.20 -0.07 -11.23 16 17 C 0.19 2.92 6.31 -83.64 -0.53 2.39 16 18 C -0.11 -1.68 8.70 -39.40 -0.34 -2.02 16 19 C -0.10 -1.13 10.04 -39.60 -0.40 -1.52 16 20 C -0.14 -1.39 10.04 -39.55 -0.40 -1.79 16 21 C -0.09 -1.03 9.82 -39.58 -0.39 -1.42 16 22 C -0.07 -0.97 6.34 -39.32 -0.25 -1.22 16 23 Cl -0.07 -0.87 27.96 -51.86 -1.45 -2.32 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 26 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 30 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 31 H 0.41 5.59 5.77 -40.82 -0.24 5.35 16 32 H 0.15 2.54 6.20 -52.49 -0.33 2.21 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 298.93 15.07 4.50 4.50 Total: -1.00 -31.95 298.93 -7.25 -39.20 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.76 Total: 4.87 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.68 Total: -0.34 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.21 Total: -49.98 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.07 Total: -13.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.48 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.45 Total: -2.32 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.95 -7.25 -39.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.320 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds