Wall clock time and date at job start Tue Mar 31 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47332 * 2 1 4 4 C 1.50701 * 109.47341 * 239.99605 * 2 1 3 5 5 H 1.07998 * 120.00177 * 240.00450 * 4 2 1 6 6 C 1.37879 * 119.99746 * 60.00513 * 4 2 1 7 7 N 1.31513 * 119.99979 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99933 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47325 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46780 * 120.00008 * 8 6 4 11 11 H 1.48495 * 109.47045 * 239.99768 * 8 6 4 12 12 N 1.46503 * 109.46879 * 120.00252 * 2 1 3 13 13 C 1.46498 * 120.00196 * 59.99584 * 12 2 1 14 14 C 1.34778 * 119.99854 * 240.00195 * 12 2 1 15 15 O 1.21594 * 120.00033 * 359.97438 * 14 12 2 16 16 N 1.34772 * 120.00112 * 179.97438 * 14 12 2 17 17 C 1.40007 * 120.00248 * 175.54091 * 16 14 12 18 18 C 1.38842 * 120.07354 * 34.69639 * 17 16 14 19 19 C 1.38119 * 119.94471 * 180.02562 * 18 17 16 20 20 C 1.38295 * 120.08852 * 0.02562 * 19 18 17 21 21 C 1.38256 * 120.15068 * 0.02562 * 20 19 18 22 22 C 1.38229 * 120.05415 * 359.67710 * 21 20 19 23 23 Cl 1.73605 * 120.04907 * 180.32391 * 22 21 20 24 24 H 1.08995 * 109.47569 * 300.00241 * 1 2 3 25 25 H 1.09004 * 109.46883 * 60.00113 * 1 2 3 26 26 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00348 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.46578 * 90.00545 * 13 12 2 29 29 H 1.09000 * 109.47131 * 209.99891 * 13 12 2 30 30 H 1.08990 * 109.47369 * 330.00306 * 13 12 2 31 31 H 0.97004 * 120.00334 * 355.53524 * 16 14 12 32 32 H 1.07999 * 120.02669 * 359.97438 * 18 17 16 33 33 H 1.08002 * 119.95528 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.92439 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.97694 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1485 -2.2857 -3.6037 10 1 1.1679 -1.5866 -4.8164 11 1 3.1474 -0.1859 -4.8159 12 7 2.0182 -0.6907 1.1962 13 6 1.6642 -2.0932 1.4280 14 6 2.7930 -0.0357 2.0834 15 8 3.0871 1.1283 1.8908 16 7 3.2418 -0.6709 3.1841 17 6 4.1219 -0.0208 4.0576 18 6 4.0063 1.3461 4.2720 19 6 4.8763 1.9848 5.1339 20 6 5.8626 1.2647 5.7830 21 6 5.9818 -0.0964 5.5715 22 6 5.1105 -0.7428 4.7149 23 17 5.2551 -2.4533 4.4559 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7083 1.1608 -3.4844 28 1 2.4156 -2.7377 0.9717 29 1 1.6236 -2.2852 2.5002 30 1 0.6903 -2.3002 0.9847 31 1 2.9550 -1.5785 3.3712 32 1 3.2372 1.9096 3.7647 33 1 4.7868 3.0481 5.3005 34 1 6.5417 1.7669 6.4561 35 1 6.7533 -0.6559 6.0795 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:11 Heat of formation + Delta-G solvation = 1.071265 kcal Electronic energy + Delta-G solvation = -19864.498088 eV Core-core repulsion = 16695.920308 eV Total energy + Delta-G solvation = -3168.577781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37021 -38.60974 -36.44920 -35.61937 -34.44694 -32.80374 -30.68590 -29.95941 -28.54808 -26.23394 -25.22493 -23.22762 -22.56562 -21.03693 -19.20931 -18.09431 -17.09156 -16.49022 -16.21778 -15.32593 -15.22546 -14.64135 -14.41469 -13.97033 -13.67199 -13.57581 -13.14121 -12.65317 -12.63684 -12.08751 -11.60496 -11.59690 -11.56099 -11.44955 -11.08296 -10.93800 -10.83618 -10.72420 -10.28599 -10.19500 -10.16622 -9.38695 -9.16970 -8.75595 -8.44768 -8.08068 -7.58610 -6.08724 -4.16275 1.17384 1.35459 2.11262 3.07742 3.25774 3.34116 3.37829 3.55102 3.92386 4.33160 4.47507 4.80727 4.99973 5.22145 5.24077 5.40398 5.46385 5.56807 5.86672 5.96316 6.18286 6.19449 6.25784 6.46833 6.62033 6.68066 6.76782 6.95103 7.05645 7.09783 7.41949 7.67274 7.76795 8.02913 8.18419 8.56510 8.84296 9.12783 9.50580 10.96705 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.004568 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.745810 B = 6127.664523 C = 6518.852695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.601 5.601 13 C 0.086 3.914 14 C 0.698 3.302 15 O -0.578 6.578 16 N -0.693 5.693 17 C 0.193 3.807 18 C -0.112 4.112 19 C -0.096 4.096 20 C -0.137 4.137 21 C -0.094 4.094 22 C -0.075 4.075 23 Cl -0.073 7.073 24 H 0.012 0.988 25 H 0.095 0.905 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.405 0.595 32 H 0.153 0.847 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.407 -3.911 16.113 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.335 5.335 13 C -0.058 4.058 14 C 0.400 3.600 15 O -0.455 6.455 16 N -0.342 5.342 17 C 0.095 3.905 18 C -0.133 4.133 19 C -0.115 4.115 20 C -0.157 4.157 21 C -0.113 4.113 22 C -0.105 4.105 23 Cl -0.045 7.045 24 H 0.031 0.969 25 H 0.114 0.886 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.243 0.757 32 H 0.171 0.829 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.446 -3.146 15.649 16.866 hybrid contribution 0.217 -1.272 -0.871 1.557 sum 5.662 -4.418 14.779 16.431 Atomic orbital electron populations 1.22120 0.98142 0.99414 1.00962 1.18936 0.90689 0.94344 0.78875 0.91615 1.21362 1.31752 1.13024 0.90231 0.92223 1.24879 0.94943 0.94980 0.98947 1.69883 1.36414 1.22630 1.23688 0.86428 0.78589 0.79593 0.82715 1.19846 1.20929 1.20900 1.47620 1.50590 1.11588 1.23701 1.21523 1.02263 0.83475 0.98523 1.15943 0.79669 0.85056 0.79307 1.90859 1.62470 1.15222 1.76992 1.43017 1.48570 1.18811 1.23830 1.17342 0.89822 0.92186 0.91174 1.21470 1.01369 0.92750 0.97728 1.21177 0.94588 1.00202 0.95490 1.21012 0.99776 0.93295 1.01580 1.20790 0.98080 0.94788 0.97620 1.20753 0.99191 0.85213 1.05323 1.98348 1.97427 1.12580 1.96099 0.96889 0.88624 0.95079 0.92717 0.93047 0.93772 0.90215 0.75734 0.82949 0.85283 0.85406 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.95 37.15 0.33 -3.14 16 2 C 0.27 6.88 2.64 -69.08 -0.18 6.70 16 3 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 4 C -0.52 -14.15 8.37 -34.44 -0.29 -14.44 16 5 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.60 -12.83 2.75 -181.01 -0.50 -13.33 16 13 C 0.09 1.44 9.48 59.85 0.57 2.01 16 14 C 0.70 14.76 8.13 -86.92 -0.71 14.05 16 15 O -0.58 -14.11 13.09 5.28 0.07 -14.04 16 16 N -0.69 -11.65 4.93 -14.19 -0.07 -11.72 16 17 C 0.19 3.05 6.31 -83.64 -0.53 2.53 16 18 C -0.11 -1.75 8.70 -39.40 -0.34 -2.09 16 19 C -0.10 -1.17 10.04 -39.60 -0.40 -1.57 16 20 C -0.14 -1.47 10.04 -39.55 -0.40 -1.86 16 21 C -0.09 -1.07 9.82 -39.58 -0.39 -1.46 16 22 C -0.08 -1.02 6.34 -39.32 -0.25 -1.27 16 23 Cl -0.07 -0.92 27.95 -51.86 -1.45 -2.37 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 26 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.58 6.30 -51.93 -0.33 0.25 16 30 H 0.08 1.32 6.43 -51.93 -0.33 0.99 16 31 H 0.40 5.83 5.76 -40.82 -0.24 5.60 16 32 H 0.15 2.69 6.20 -52.49 -0.33 2.36 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -30.47 305.74 -8.30 -38.77 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.89 Total: 5.20 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.67 Total: 1.12 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.06 Total: -49.35 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.04 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.45 Total: -2.37 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.47 -8.30 -38.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.845 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds