Wall clock time and date at job start Tue Mar 31 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46807 * 2 1 4 4 C 1.50694 * 109.46879 * 240.00419 * 2 1 3 5 5 H 1.08007 * 120.00050 * 240.00179 * 4 2 1 6 6 C 1.37875 * 120.00510 * 59.99748 * 4 2 1 7 7 N 1.31512 * 119.99555 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00369 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46816 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47052 * 120.00136 * 8 6 4 11 11 H 1.48497 * 109.47126 * 240.00282 * 8 6 4 12 12 N 1.46897 * 109.46923 * 120.00523 * 2 1 3 13 13 C 1.46907 * 111.00006 * 274.99823 * 12 2 1 14 14 C 1.50693 * 109.47257 * 180.02562 * 13 12 2 15 15 O 1.21285 * 120.00306 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00061 * 180.02562 * 14 13 12 17 17 C 1.39968 * 120.00142 * 175.37602 * 16 14 13 18 18 C 1.38864 * 120.05311 * 214.80639 * 17 16 14 19 19 C 1.38118 * 119.93848 * 179.78874 * 18 17 16 20 20 C 1.38384 * 120.05457 * 0.49090 * 19 18 17 21 21 Cl 1.73607 * 119.94104 * 179.72009 * 20 19 18 22 22 C 1.38383 * 120.11789 * 359.74192 * 20 19 18 23 23 C 1.38104 * 120.05614 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.47462 * 59.99337 * 1 2 3 25 25 H 1.08999 * 109.47395 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47400 * 299.99781 * 1 2 3 27 27 H 0.97002 * 120.00065 * 179.97438 * 7 6 4 28 28 H 1.00896 * 110.99903 * 151.04638 * 12 2 1 29 29 H 1.09003 * 109.46947 * 300.00580 * 13 12 2 30 30 H 1.09003 * 109.46723 * 59.99728 * 13 12 2 31 31 H 0.97008 * 119.99541 * 355.37404 * 16 14 13 32 32 H 1.07992 * 120.03482 * 359.97438 * 18 17 16 33 33 H 1.07994 * 119.97347 * 180.23273 * 19 18 17 34 34 H 1.08005 * 119.97174 * 180.02562 * 22 20 19 35 35 H 1.08001 * 120.02997 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 3.1473 -2.2862 -3.6038 10 1 1.1677 -1.5864 -4.8165 11 1 3.1471 -0.1856 -4.8161 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2224 2.3469 14 6 2.5884 -0.5217 3.5557 15 8 2.8695 -1.6984 3.4697 16 7 2.7286 0.1203 4.7324 17 6 3.1055 -0.5912 5.8773 18 6 2.5975 -0.2311 7.1185 19 6 2.9676 -0.9376 8.2462 20 6 3.8517 -1.9970 8.1411 21 17 4.3206 -2.8784 9.5614 22 6 4.3631 -2.3548 6.9060 23 6 3.9925 -1.6547 5.7748 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1619 -3.4843 28 1 2.9172 -1.1206 1.0286 29 1 2.7588 1.0461 2.1183 30 1 1.0870 0.6162 2.5525 31 1 2.5682 1.0755 4.7858 32 1 1.9114 0.5987 7.2017 33 1 2.5700 -0.6604 9.2112 34 1 5.0526 -3.1823 6.8267 35 1 4.3922 -1.9340 4.8111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068613584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:18 Heat of formation + Delta-G solvation = -13.846731 kcal Electronic energy + Delta-G solvation = -18805.963785 eV Core-core repulsion = 15636.739111 eV Total energy + Delta-G solvation = -3169.224673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56777 -38.68081 -36.68327 -35.71327 -34.63149 -32.58833 -31.27753 -30.08661 -28.75817 -25.80473 -24.91263 -23.30070 -22.42638 -20.43076 -19.83568 -18.10256 -17.24734 -16.79768 -16.22781 -15.74662 -14.95540 -14.78832 -14.65261 -14.06881 -13.74493 -13.68832 -13.46263 -13.22355 -12.56332 -12.50999 -12.14810 -11.85170 -11.67468 -11.34418 -11.05858 -10.97140 -10.77924 -10.43191 -10.24715 -10.19932 -10.11106 -9.63092 -9.22545 -8.89603 -8.53401 -8.23695 -7.40823 -6.08529 -4.14623 0.89123 1.09203 1.95559 2.66074 2.94954 3.26779 3.34938 3.40257 3.48852 4.37087 4.54747 4.66344 4.85454 5.03849 5.18596 5.21264 5.28758 5.32171 5.69797 5.71670 5.75843 5.78638 6.05243 6.09864 6.24184 6.72694 6.75985 7.03464 7.10397 7.26191 7.40382 7.73383 7.80058 8.18071 8.19915 8.27035 8.56001 8.94957 9.51736 10.98037 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.044367 B = 0.002728 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.945626 B =10260.301216 C =10713.103439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.672 5.672 13 C 0.045 3.955 14 C 0.513 3.487 15 O -0.501 6.501 16 N -0.683 5.683 17 C 0.162 3.838 18 C -0.139 4.139 19 C -0.092 4.092 20 C -0.057 4.057 21 Cl -0.078 7.078 22 C -0.090 4.090 23 C -0.112 4.112 24 H 0.082 0.918 25 H 0.034 0.966 26 H 0.003 0.997 27 H 0.261 0.739 28 H 0.342 0.658 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.412 0.588 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.767 0.829 21.119 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.306 5.306 13 C -0.088 4.088 14 C 0.302 3.698 15 O -0.373 6.373 16 N -0.329 5.329 17 C 0.066 3.934 18 C -0.160 4.160 19 C -0.111 4.111 20 C -0.084 4.084 21 Cl -0.050 7.050 22 C -0.109 4.109 23 C -0.132 4.132 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.022 0.978 27 H 0.071 0.929 28 H 0.160 0.840 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.248 0.752 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.270 -0.230 21.086 21.515 hybrid contribution 0.872 0.586 -0.868 1.363 sum 5.142 0.356 20.217 20.864 Atomic orbital electron populations 1.21747 0.97691 0.99643 0.99391 1.19169 0.92766 0.92304 0.85218 0.97927 1.21278 1.31529 1.12639 0.90237 0.91948 1.24913 0.94977 0.94992 0.99110 1.69897 1.36661 1.22892 1.23491 0.86432 0.78654 0.79647 0.82655 1.19648 1.20919 1.21075 1.60539 1.33477 1.31634 1.04933 1.21826 1.01541 0.94987 0.90413 1.21399 0.76562 0.87988 0.83901 1.90682 1.46891 1.15943 1.83800 1.43766 1.69426 1.12232 1.07521 1.17898 0.94410 0.94564 0.86490 1.20874 1.01695 1.02432 0.90982 1.20791 0.96940 0.94275 0.99087 1.20881 1.02106 0.97303 0.88111 1.98359 1.91418 1.75523 1.39667 1.20985 0.99776 0.99988 0.90178 1.21351 0.96376 0.95845 0.99627 0.89892 0.94720 0.97759 0.92912 0.83979 0.92845 0.88411 0.75206 0.84741 0.84748 0.84697 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.19 37.16 0.34 -2.72 16 2 C 0.21 5.22 2.60 -68.87 -0.18 5.04 16 3 H 0.00 0.08 7.80 -51.93 -0.41 -0.32 16 4 C -0.52 -14.06 8.59 -34.44 -0.30 -14.36 16 5 H 0.06 1.70 7.62 -52.48 -0.40 1.30 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.67 -14.28 5.93 -109.22 -0.65 -14.93 16 13 C 0.05 0.73 5.97 -4.98 -0.03 0.70 16 14 C 0.51 7.78 7.71 -10.99 -0.08 7.70 16 15 O -0.50 -9.36 13.64 5.55 0.08 -9.29 16 16 N -0.68 -7.64 5.34 -9.86 -0.05 -7.69 16 17 C 0.16 1.88 6.30 -83.68 -0.53 1.35 16 18 C -0.14 -1.30 9.97 -39.39 -0.39 -1.69 16 19 C -0.09 -0.85 9.82 -39.57 -0.39 -1.23 16 20 C -0.06 -0.59 6.32 -39.47 -0.25 -0.84 16 21 Cl -0.08 -0.75 28.95 -51.86 -1.50 -2.25 16 22 C -0.09 -1.00 9.82 -39.58 -0.39 -1.39 16 23 C -0.11 -1.41 8.70 -39.40 -0.34 -1.75 16 24 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.34 7.41 7.92 -39.29 -0.31 7.09 16 29 H 0.05 0.79 8.06 -51.93 -0.42 0.37 16 30 H 0.10 1.49 7.44 -51.93 -0.39 1.10 16 31 H 0.41 3.17 8.82 -40.82 -0.36 2.81 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 35 H 0.15 2.12 6.22 -52.49 -0.33 1.79 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -30.43 314.35 -8.55 -38.98 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -4.14 Total: 6.22 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.63 Total: -7.59 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.07 Total: -46.88 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.43 -8.55 -38.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068613584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.136 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds