Wall clock time and date at job start Tue Mar 31 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00138 * 2 1 4 4 C 1.50701 * 109.46918 * 269.99728 * 3 2 1 5 5 H 1.07996 * 120.00283 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00046 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99716 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99825 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47251 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47186 * 120.00162 * 8 6 4 11 11 H 1.48500 * 109.46810 * 239.99480 * 8 6 4 12 12 C 1.34781 * 120.00240 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00198 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99696 * 0.02562 * 12 2 1 15 15 N 1.46493 * 109.46840 * 180.02562 * 14 12 2 16 16 C 1.39751 * 120.00078 * 180.02562 * 15 14 12 17 17 C 1.38891 * 120.07708 * 359.97438 * 16 15 14 18 18 C 1.38115 * 119.93675 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.09562 * 0.02562 * 18 17 16 20 20 C 1.38266 * 120.16045 * 0.02562 * 19 18 17 21 21 C 1.38217 * 120.05955 * 359.97438 * 20 19 18 22 22 Cl 1.73602 * 120.04475 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.47658 * 270.00184 * 1 2 3 24 24 H 1.08995 * 109.46992 * 30.00592 * 1 2 3 25 25 H 1.09006 * 109.46789 * 150.00039 * 1 2 3 26 26 H 1.08999 * 109.47021 * 29.99364 * 3 2 1 27 27 H 1.08997 * 109.47782 * 149.99650 * 3 2 1 28 28 H 0.97006 * 119.99559 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47196 * 59.99720 * 14 12 2 30 30 H 1.08998 * 109.46851 * 300.00047 * 14 12 2 31 31 H 0.97001 * 120.00526 * 359.97438 * 15 14 12 32 32 H 1.07998 * 120.02493 * 0.27415 * 17 16 15 33 33 H 1.07999 * 119.94953 * 179.97438 * 18 17 16 34 34 H 1.08008 * 119.92044 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.97326 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6732 8 14 3.4377 3.4168 -3.4341 9 1 2.8598 2.4168 -4.3673 10 1 2.8008 4.7380 -3.6668 11 1 4.9002 3.5244 -3.6680 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3374 -3.5857 0.0018 16 6 1.8716 -4.9033 0.0014 17 6 0.5064 -5.1591 0.0005 18 6 0.0493 -6.4624 0.0007 19 6 0.9488 -7.5127 0.0024 20 6 2.3087 -7.2627 0.0044 21 6 2.7733 -5.9610 0.0042 22 17 4.4808 -5.6476 0.0061 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1385 0.5139 28 1 4.0312 4.4434 -0.8506 29 1 0.7590 -2.5302 -0.8896 30 1 0.7584 -2.5298 0.8903 31 1 3.2911 -3.4085 0.0020 32 1 -0.1969 -4.3395 -0.0045 33 1 -1.0122 -6.6614 0.0004 34 1 0.5882 -8.5308 0.0030 35 1 3.0085 -8.0853 0.0054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070920790.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:53 Heat of formation + Delta-G solvation = -12.903783 kcal Electronic energy + Delta-G solvation = -19183.839391 eV Core-core repulsion = 16014.655607 eV Total energy + Delta-G solvation = -3169.183784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.81517 -38.92614 -36.36717 -35.50724 -34.81746 -32.69137 -30.80792 -30.11751 -28.12288 -26.61492 -25.55212 -23.14154 -22.50400 -21.53745 -18.84013 -17.85308 -16.68296 -16.62898 -16.11298 -15.69276 -15.37222 -15.09702 -14.35901 -14.19423 -14.00361 -13.84785 -13.51792 -13.12774 -12.54856 -12.30827 -12.13954 -12.01205 -11.92944 -11.50460 -11.37596 -11.26564 -10.93576 -10.82672 -10.65603 -10.26971 -10.22181 -9.68977 -9.16034 -8.90100 -8.49596 -7.80189 -7.48911 -6.10438 -4.15593 1.14224 1.42623 2.21759 3.17043 3.22478 3.26445 3.34584 3.38901 3.65276 3.92134 4.39882 4.68244 4.85839 4.88990 5.16116 5.24113 5.24972 5.28620 5.35043 5.44315 5.56461 5.71619 5.82163 5.99790 6.10878 6.16183 6.40282 6.61206 6.88957 7.15187 7.33441 7.40989 7.71011 7.85228 8.15068 8.24014 8.76418 8.92487 9.49783 10.97772 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.003762 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.212474 B = 7441.303477 C = 7993.786956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.245 3.755 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.498 3.502 13 O -0.536 6.536 14 C 0.103 3.897 15 N -0.724 5.724 16 C 0.237 3.763 17 C -0.195 4.195 18 C -0.065 4.065 19 C -0.178 4.178 20 C -0.061 4.061 21 C -0.118 4.118 22 Cl -0.071 7.071 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.416 0.584 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.942 -19.168 2.589 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.328 5.328 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.283 3.717 13 O -0.413 6.413 14 C -0.026 4.026 15 N -0.356 5.356 16 C 0.129 3.871 17 C -0.218 4.218 18 C -0.083 4.083 19 C -0.199 4.199 20 C -0.080 4.080 21 C -0.150 4.150 22 Cl -0.043 7.043 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.257 0.743 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.172 -18.722 2.636 20.597 hybrid contribution 0.583 0.586 -0.994 1.292 sum -7.589 -18.136 1.642 19.729 Atomic orbital electron populations 1.21714 0.81093 1.02906 1.00755 1.48119 1.06385 1.07601 1.70715 1.19352 0.92613 0.77733 0.97724 1.21448 1.36734 1.06400 0.92182 0.92362 1.24944 0.95246 0.96353 0.97553 1.69941 1.38242 1.14329 1.30725 0.86424 0.78149 0.78326 0.84419 1.19789 1.20889 1.20821 1.20137 0.88216 0.85140 0.78171 1.90680 1.13699 1.86677 1.50269 1.21212 0.92469 0.86007 1.02871 1.44695 1.10213 1.00937 1.79749 1.17577 0.92303 0.84012 0.93176 1.20645 0.92499 0.97880 1.10778 1.20962 0.99648 0.91895 0.95845 1.20803 0.92222 0.99206 1.07674 1.20796 0.96130 0.94041 0.97050 1.20384 0.84267 0.93888 1.16412 1.98361 1.12656 1.95849 1.97415 0.93326 0.90343 0.92377 0.94704 0.93718 0.92683 0.89447 0.89567 0.74330 0.85245 0.85693 0.85763 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.24 59.84 0.61 1.76 16 2 N -0.60 -12.08 2.86 -182.96 -0.52 -12.60 16 3 C 0.24 6.26 5.16 -5.19 -0.03 6.23 16 4 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 C 0.50 9.96 7.74 -10.98 -0.09 9.87 16 13 O -0.54 -13.11 15.25 5.56 0.08 -13.03 16 14 C 0.10 1.47 3.95 -5.20 -0.02 1.45 16 15 N -0.72 -11.04 5.66 -59.78 -0.34 -11.38 16 16 C 0.24 3.16 6.65 -83.73 -0.56 2.60 16 17 C -0.19 -2.13 9.31 -39.38 -0.37 -2.50 16 18 C -0.06 -0.60 10.04 -39.61 -0.40 -0.99 16 19 C -0.18 -1.64 10.04 -39.55 -0.40 -2.04 16 20 C -0.06 -0.65 9.82 -39.58 -0.39 -1.03 16 21 C -0.12 -1.53 6.34 -39.31 -0.25 -1.78 16 22 Cl -0.07 -0.97 27.60 -51.86 -1.43 -2.40 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 25 H 0.06 0.65 6.44 -51.93 -0.33 0.32 16 26 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.09 1.09 7.21 -51.93 -0.37 0.72 16 30 H 0.09 1.02 7.92 -51.93 -0.41 0.61 16 31 H 0.42 7.20 6.11 -40.82 -0.25 6.95 16 32 H 0.13 1.20 6.74 -52.49 -0.35 0.85 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 316.06 15.07 4.76 4.76 Total: -1.00 -32.56 316.06 -8.21 -40.77 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.18 Total: 2.66 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.30 Total: 0.09 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.12 Total: -49.57 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.43 Total: -2.40 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.56 -8.21 -40.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070920790.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.869 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds