Wall clock time and date at job start Tue Mar 31 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47231 * 2 1 4 4 N 1.46505 * 109.46734 * 119.99652 * 2 1 3 5 5 C 1.46499 * 120.00145 * 294.14790 * 4 2 1 6 6 C 1.50698 * 109.47433 * 270.00194 * 5 4 2 7 7 H 1.08004 * 119.99573 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00383 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99847 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00283 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47573 * 90.00094 * 10 8 6 12 12 H 1.48509 * 109.47161 * 210.00120 * 10 8 6 13 13 H 1.48504 * 109.47339 * 330.00167 * 10 8 6 14 14 C 1.34775 * 119.99675 * 114.14802 * 4 2 1 15 15 O 1.21531 * 119.99770 * 184.22892 * 14 4 2 16 16 C 1.48074 * 120.00364 * 4.23633 * 14 4 2 17 17 C 1.39860 * 120.92919 * 304.82154 * 16 14 4 18 18 C 1.38087 * 119.01689 * 180.02562 * 17 16 14 19 19 N 1.31843 * 120.93992 * 359.97438 * 18 17 16 20 20 C 1.31756 * 122.07291 * 359.69898 * 19 18 17 21 21 C 1.38356 * 120.86724 * 0.59446 * 20 19 18 22 22 Cl 1.73602 * 120.51638 * 179.70047 * 21 20 19 23 23 H 1.09003 * 109.47732 * 300.00349 * 1 2 3 24 24 H 1.09001 * 109.47145 * 60.00448 * 1 2 3 25 25 H 1.09006 * 109.47576 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47139 * 239.99441 * 2 1 3 27 27 H 1.09002 * 109.47032 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47186 * 299.99645 * 3 2 1 29 29 H 1.09005 * 109.47510 * 59.99479 * 3 2 1 30 30 H 1.08998 * 109.47111 * 30.00464 * 5 4 2 31 31 H 1.09006 * 109.46976 * 149.99771 * 5 4 2 32 32 H 0.97000 * 120.00454 * 179.97438 * 9 8 6 33 33 H 1.08003 * 120.49816 * 359.97438 * 17 16 14 34 34 H 1.08001 * 119.53207 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.56508 * 180.31601 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7730 -0.1197 2.5230 6 6 2.9112 0.7955 2.8944 7 1 3.7351 0.9373 2.2106 8 6 2.9008 1.4516 4.1068 9 7 1.8978 1.2784 4.9396 10 14 4.3120 2.5854 4.5674 11 1 4.0128 3.9631 4.1009 12 1 4.4832 2.5887 6.0426 13 1 5.5622 2.1060 3.9251 14 6 2.6930 -1.8510 1.0762 15 8 3.0310 -2.4631 2.0702 16 6 3.0227 -2.3803 -0.2669 17 6 2.0228 -2.5913 -1.2217 18 6 2.3746 -3.0868 -2.4617 19 7 3.6317 -3.3596 -2.7510 20 6 4.6059 -3.1702 -1.8844 21 6 4.3434 -2.6827 -0.6165 22 17 5.6332 -2.4439 0.5207 23 1 -0.3635 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.8416 0.4462 2.5085 31 1 1.6986 -0.9230 3.2561 32 1 1.8906 1.7398 5.7929 33 1 0.9907 -2.3708 -0.9925 34 1 1.6091 -3.2534 -3.2052 35 1 5.6223 -3.4027 -2.1661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073845807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:58 Heat of formation + Delta-G solvation = -3.142983 kcal Electronic energy + Delta-G solvation = -20422.652585 eV Core-core repulsion = 17253.892061 eV Total energy + Delta-G solvation = -3168.760524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.63716 -38.79199 -36.54253 -36.04759 -33.14261 -32.40911 -31.16939 -30.93863 -27.62733 -26.78289 -24.73635 -23.68592 -22.65935 -21.39823 -19.10035 -17.35835 -16.77292 -16.48511 -16.41881 -15.60105 -15.02000 -14.43921 -14.34682 -14.07359 -13.94589 -13.50122 -13.23820 -12.73000 -12.31749 -12.05331 -11.93495 -11.77618 -11.69824 -11.27432 -11.07068 -10.98056 -10.94355 -10.69558 -10.48875 -10.10135 -9.98260 -9.68237 -9.59090 -9.04827 -9.01128 -8.45653 -7.78586 -6.07299 -4.10737 0.75562 0.81957 2.10686 3.13351 3.27897 3.35382 3.39234 3.49279 3.74616 4.24111 4.41062 4.58236 4.64445 4.74367 5.07146 5.16887 5.27447 5.38716 5.44660 5.54416 5.61868 5.80624 5.91854 6.05707 6.18053 6.28287 6.31263 6.52781 6.90748 6.99160 7.37746 7.44786 7.64620 7.88988 8.19009 8.25244 8.77030 8.95746 9.53493 11.01011 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.006572 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.297320 B = 4259.738194 C = 5064.121827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 C -0.154 4.154 4 N -0.578 5.578 5 C 0.247 3.753 6 C -0.520 4.520 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.545 3.455 15 O -0.514 6.514 16 C -0.058 4.058 17 C -0.138 4.138 18 C 0.095 3.905 19 N -0.466 5.466 20 C 0.109 3.891 21 C -0.056 4.056 22 Cl -0.028 7.028 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -4.921 -15.206 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 C -0.212 4.212 4 N -0.309 5.309 5 C 0.129 3.871 6 C -0.559 4.559 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.329 3.671 15 O -0.390 6.390 16 C -0.070 4.070 17 C -0.158 4.158 18 C -0.061 4.061 19 N -0.175 5.175 20 C -0.049 4.049 21 C -0.086 4.086 22 Cl 0.001 6.999 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.183 0.817 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.162 -5.467 -15.163 16.119 hybrid contribution 0.642 1.088 1.254 1.780 sum 0.480 -4.379 -13.909 14.589 Atomic orbital electron populations 1.22196 0.95369 1.01718 1.02785 1.21233 0.94138 0.94678 0.88091 1.22096 1.01669 0.95129 1.02303 1.48291 1.52643 1.20553 1.09436 1.19320 0.96848 0.94163 0.76808 1.21400 1.06238 1.25859 1.02430 0.92280 1.24897 0.96057 0.96985 0.96037 1.69923 1.30879 1.43036 1.09506 0.86558 0.82757 0.80789 0.77735 1.20629 1.21114 1.19891 1.17900 0.79948 0.82296 0.86917 1.90810 1.52553 1.58244 1.37375 1.20731 0.92512 0.97399 0.96362 1.22440 1.00511 0.99374 0.93492 1.22785 0.93410 0.94676 0.95258 1.67656 1.00785 1.14975 1.34116 1.22754 0.99570 0.95190 0.87373 1.22211 0.90291 1.02630 0.93480 1.98435 1.47197 1.94843 1.59402 0.91175 0.91926 0.92941 0.90498 0.92507 0.93170 0.89996 0.94484 0.93717 0.92727 0.83329 0.81665 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.05 37.16 0.34 -1.84 16 2 C 0.12 1.95 2.54 -67.93 -0.17 1.78 16 3 C -0.15 -2.53 8.34 37.16 0.31 -2.22 16 4 N -0.58 -11.82 2.38 -168.49 -0.40 -12.22 16 5 C 0.25 6.17 4.47 -5.20 -0.02 6.14 16 6 C -0.52 -14.13 7.85 -34.44 -0.27 -14.40 16 7 H 0.06 1.62 7.52 -52.48 -0.39 1.22 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 10 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.55 11.36 6.66 -12.23 -0.08 11.28 16 15 O -0.51 -12.83 15.91 5.34 0.08 -12.74 16 16 C -0.06 -0.95 4.85 -104.62 -0.51 -1.46 16 17 C -0.14 -1.72 7.54 -39.03 -0.29 -2.02 16 18 C 0.09 1.03 11.17 -17.60 -0.20 0.83 16 19 N -0.47 -5.79 10.33 -13.27 -0.14 -5.92 16 20 C 0.11 1.39 10.99 -17.54 -0.19 1.20 16 21 C -0.06 -0.87 6.38 -38.91 -0.25 -1.12 16 22 Cl -0.03 -0.47 27.62 -51.86 -1.43 -1.91 16 23 H 0.07 1.07 6.91 -51.93 -0.36 0.71 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.64 7.33 -51.93 -0.38 0.26 16 26 H 0.08 1.08 4.63 -51.93 -0.24 0.84 16 27 H 0.06 1.01 7.95 -51.93 -0.41 0.59 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.55 6.94 -51.93 -0.36 1.19 16 30 H 0.04 0.93 6.71 -51.93 -0.35 0.58 16 31 H 0.04 1.28 7.37 -51.93 -0.38 0.90 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.15 1.59 6.49 -52.48 -0.34 1.25 16 34 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -31.91 308.25 -7.01 -38.92 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.05 Total: -1.97 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.44 Total: -0.19 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.20 Total: -43.34 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.43 Total: -1.91 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.91 -7.01 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073845807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.780 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds