Wall clock time and date at job start Tue Mar 31 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 111.00376 * 2 1 4 4 C 1.50700 * 109.47167 * 66.04666 * 3 2 1 5 5 O 1.21288 * 119.99624 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99893 * 179.97438 * 4 3 2 7 7 C 1.37102 * 119.99740 * 180.02562 * 6 4 3 8 8 H 1.07999 * 119.99857 * 0.02562 * 7 6 4 9 9 C 1.38943 * 120.00056 * 179.97438 * 7 6 4 10 10 N 1.31413 * 119.99948 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00299 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46971 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47303 * 120.00221 * 11 9 7 14 14 H 1.48503 * 109.47110 * 240.00239 * 11 9 7 15 15 C 1.46909 * 110.99581 * 236.04785 * 2 1 3 16 16 C 1.50699 * 109.46961 * 293.95307 * 15 2 1 17 17 C 1.38237 * 120.00455 * 104.99910 * 16 15 2 18 18 C 1.38224 * 120.01313 * 179.74163 * 17 16 15 19 19 C 1.38264 * 120.02445 * 0.26351 * 18 17 16 20 20 C 1.38190 * 120.01695 * 0.02562 * 19 18 17 21 21 C 1.38328 * 120.01174 * 285.27645 * 16 15 2 22 22 Cl 1.73603 * 120.01189 * 0.02562 * 21 16 15 23 23 H 1.08993 * 109.47534 * 183.95445 * 1 2 3 24 24 H 1.09002 * 109.46770 * 303.95615 * 1 2 3 25 25 H 1.09006 * 109.47418 * 63.94914 * 1 2 3 26 26 H 1.08999 * 109.47131 * 186.04751 * 3 2 1 27 27 H 1.09000 * 109.47084 * 306.04639 * 3 2 1 28 28 H 0.96995 * 120.00344 * 359.97438 * 6 4 3 29 29 H 0.96999 * 120.00213 * 180.02562 * 10 9 7 30 30 H 1.08993 * 109.47031 * 173.95800 * 15 2 1 31 31 H 1.08991 * 109.47270 * 53.95292 * 15 2 1 32 32 H 1.08002 * 119.99593 * 0.02780 * 17 16 15 33 33 H 1.07996 * 119.98813 * 180.23496 * 18 17 16 34 34 H 1.08004 * 119.98845 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.00844 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0055 1.4452 2.1411 6 7 2.0191 3.3198 1.5237 7 6 1.6934 3.9343 2.7052 8 1 1.1311 3.3984 3.4555 9 6 2.0877 5.2462 2.9377 10 7 2.7724 5.8981 2.0249 11 14 1.6447 6.0833 4.5478 12 1 0.8761 5.1411 5.4004 13 1 2.8869 6.4892 5.2529 14 1 0.8180 7.2853 4.2696 15 6 1.9954 -0.7660 -1.1377 16 6 1.6368 -2.2204 -0.9730 17 6 0.6295 -2.7753 -1.7401 18 6 0.3041 -4.1106 -1.5929 19 6 0.9821 -4.8907 -0.6746 20 6 1.9852 -4.3358 0.0972 21 6 2.3116 -2.9991 -0.0500 22 17 3.5713 -2.3011 0.9193 23 1 -0.3634 -1.0251 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3634 0.4513 -0.9233 26 1 3.0798 1.3442 -0.1083 27 1 1.5612 1.9273 -0.8309 28 1 2.5251 3.8007 0.8503 29 1 3.0480 6.8138 2.1873 30 1 3.0796 -0.6612 -1.1757 31 1 1.5610 -0.3873 -2.0628 32 1 0.0998 -2.1665 -2.4579 33 1 -0.4803 -4.5445 -2.1952 34 1 0.7271 -5.9339 -0.5597 35 1 2.5149 -4.9454 0.8142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076667933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:25 Heat of formation + Delta-G solvation = -9.139470 kcal Electronic energy + Delta-G solvation = -19397.948324 eV Core-core repulsion = 16228.927773 eV Total energy + Delta-G solvation = -3169.020551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.65856 -38.37907 -36.22616 -36.20348 -33.82534 -31.75338 -31.17024 -30.76304 -27.78162 -26.87240 -24.69159 -22.80441 -22.61612 -20.83148 -19.10691 -17.79965 -17.08697 -16.07432 -15.86743 -15.47444 -15.01616 -14.63876 -14.54247 -13.92986 -13.80323 -13.52452 -13.40587 -13.07205 -12.77688 -12.05945 -11.90880 -11.59320 -11.47398 -11.37822 -11.28507 -11.19870 -11.11741 -10.91225 -10.52499 -10.31161 -10.18458 -9.44185 -9.02056 -8.66476 -8.39381 -7.92423 -7.77454 -6.37630 -3.78040 1.10547 1.15794 2.34096 3.19069 3.29285 3.36625 3.49581 3.96543 4.13374 4.33838 4.64629 4.69545 4.86418 5.05741 5.17580 5.26620 5.29879 5.42916 5.49516 5.65619 5.76922 5.77792 5.84014 6.01794 6.03673 6.14617 6.27417 6.32641 6.34703 6.60581 6.69874 7.32590 7.42764 7.59519 8.11499 8.67069 9.23053 9.59763 10.12097 10.80387 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032922 B = 0.003699 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.296343 B = 7567.642243 C = 7817.114993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.506 5.506 3 C 0.047 3.953 4 C 0.447 3.553 5 O -0.574 6.574 6 N -0.567 5.567 7 C -0.296 4.296 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.928 3.072 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.089 3.911 16 C -0.065 4.065 17 C -0.103 4.103 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.010 4.010 22 Cl -0.051 7.051 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.013 0.987 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.391 0.609 29 H 0.270 0.730 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -17.178 -10.217 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.229 5.229 3 C -0.084 4.084 4 C 0.232 3.768 5 O -0.458 6.458 6 N -0.204 5.204 7 C -0.425 4.425 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.545 5.545 11 Si 0.755 3.245 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.039 4.039 16 C -0.067 4.067 17 C -0.122 4.122 18 C -0.140 4.140 19 C -0.131 4.131 20 C -0.136 4.136 21 C -0.037 4.037 22 Cl -0.022 7.022 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.031 0.969 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.225 0.775 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.184 -17.530 -9.108 19.790 hybrid contribution -0.012 1.242 -0.333 1.286 sum -1.195 -16.288 -9.441 18.864 Atomic orbital electron populations 1.22545 0.86747 1.01920 1.01252 1.61560 1.08586 1.12573 1.40225 1.21859 1.00698 0.88712 0.97174 1.19713 0.85312 0.82853 0.88910 1.90490 1.43729 1.64546 1.47029 1.41869 1.49604 1.10823 1.18071 1.19741 1.32693 0.95410 0.94704 0.87902 1.25242 0.96928 0.96671 0.99179 1.69622 1.38294 1.12190 1.34384 0.85818 0.78181 0.79011 0.81444 1.19239 1.20792 1.20833 1.21099 1.01000 0.89180 0.92598 1.19693 0.95763 0.95709 0.95490 1.21046 0.96430 0.95335 0.99393 1.21159 1.00025 0.93974 0.98844 1.21067 0.95873 1.00033 0.96101 1.21073 0.98634 0.93373 1.00482 1.20832 0.94372 0.93245 0.95271 1.98401 1.49840 1.84537 1.69419 0.92297 0.88586 0.96899 0.89409 0.93508 0.77547 0.92009 0.89528 0.94003 0.85514 0.85705 0.85474 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.98 60.06 0.54 0.93 16 2 N -0.51 -8.64 4.37 -245.83 -1.07 -9.72 16 3 C 0.05 0.85 5.45 -4.98 -0.03 0.83 16 4 C 0.45 10.68 7.47 -10.98 -0.08 10.59 16 5 O -0.57 -15.64 13.91 5.55 0.08 -15.57 16 6 N -0.57 -14.52 5.29 -10.96 -0.06 -14.58 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 11 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.09 1.21 4.43 -4.97 -0.02 1.18 16 16 C -0.07 -0.84 4.42 -104.59 -0.46 -1.30 16 17 C -0.10 -1.10 9.12 -39.59 -0.36 -1.47 16 18 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 19 C -0.11 -1.06 10.05 -39.59 -0.40 -1.45 16 20 C -0.12 -1.30 9.83 -39.55 -0.39 -1.69 16 21 C -0.01 -0.13 6.31 -39.50 -0.25 -0.38 16 22 Cl -0.05 -0.75 27.55 -51.86 -1.43 -2.18 16 23 H 0.06 0.92 6.88 -51.93 -0.36 0.57 16 24 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 1.47 7.93 -51.93 -0.41 1.06 16 27 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.09 1.15 7.39 -51.93 -0.38 0.76 16 31 H 0.04 0.50 7.93 -51.93 -0.41 0.09 16 32 H 0.13 1.14 8.00 -52.49 -0.42 0.72 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -31.48 314.09 -8.37 -39.85 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.23 Total: 7.58 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.09 Total: -2.30 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.41 Total: -48.40 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.08 Total: -15.57 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.43 Total: -2.18 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.48 -8.37 -39.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076667933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.711 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds