Wall clock time and date at job start Tue Mar 31 2020 06:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 111.00376 * 2 1 4 4 C 1.50700 * 109.47167 * 66.04666 * 3 2 1 5 5 O 1.21288 * 119.99624 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99893 * 179.97438 * 4 3 2 7 7 C 1.37102 * 119.99740 * 180.02562 * 6 4 3 8 8 H 1.07999 * 119.99857 * 0.02562 * 7 6 4 9 9 C 1.38943 * 120.00056 * 179.97438 * 7 6 4 10 10 N 1.31413 * 119.99948 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00299 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46971 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47303 * 120.00221 * 11 9 7 14 14 H 1.48503 * 109.47110 * 240.00239 * 11 9 7 15 15 C 1.46909 * 110.99581 * 236.04785 * 2 1 3 16 16 C 1.50699 * 109.46961 * 293.95307 * 15 2 1 17 17 C 1.38237 * 120.00455 * 104.99910 * 16 15 2 18 18 C 1.38224 * 120.01313 * 179.74163 * 17 16 15 19 19 C 1.38264 * 120.02445 * 0.26351 * 18 17 16 20 20 C 1.38190 * 120.01695 * 0.02562 * 19 18 17 21 21 C 1.38328 * 120.01174 * 285.27645 * 16 15 2 22 22 Cl 1.73603 * 120.01189 * 0.02562 * 21 16 15 23 23 H 1.08993 * 109.47534 * 183.95445 * 1 2 3 24 24 H 1.09002 * 109.46770 * 303.95615 * 1 2 3 25 25 H 1.09006 * 109.47418 * 63.94914 * 1 2 3 26 26 H 1.08999 * 109.47131 * 186.04751 * 3 2 1 27 27 H 1.09000 * 109.47084 * 306.04639 * 3 2 1 28 28 H 0.96995 * 120.00344 * 359.97438 * 6 4 3 29 29 H 0.96999 * 120.00213 * 180.02562 * 10 9 7 30 30 H 1.08993 * 109.47031 * 173.95800 * 15 2 1 31 31 H 1.08991 * 109.47270 * 53.95292 * 15 2 1 32 32 H 1.08002 * 119.99593 * 0.02780 * 17 16 15 33 33 H 1.07996 * 119.98813 * 180.23496 * 18 17 16 34 34 H 1.08004 * 119.98845 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.00844 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0055 1.4452 2.1411 6 7 2.0191 3.3198 1.5237 7 6 1.6934 3.9343 2.7052 8 1 1.1311 3.3984 3.4555 9 6 2.0877 5.2462 2.9377 10 7 2.7724 5.8981 2.0249 11 14 1.6447 6.0833 4.5478 12 1 0.8761 5.1411 5.4004 13 1 2.8869 6.4892 5.2529 14 1 0.8180 7.2853 4.2696 15 6 1.9954 -0.7660 -1.1377 16 6 1.6368 -2.2204 -0.9730 17 6 0.6295 -2.7753 -1.7401 18 6 0.3041 -4.1106 -1.5929 19 6 0.9821 -4.8907 -0.6746 20 6 1.9852 -4.3358 0.0972 21 6 2.3116 -2.9991 -0.0500 22 17 3.5713 -2.3011 0.9193 23 1 -0.3634 -1.0251 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3634 0.4513 -0.9233 26 1 3.0798 1.3442 -0.1083 27 1 1.5612 1.9273 -0.8309 28 1 2.5251 3.8007 0.8503 29 1 3.0480 6.8138 2.1873 30 1 3.0796 -0.6612 -1.1757 31 1 1.5610 -0.3873 -2.0628 32 1 0.0998 -2.1665 -2.4579 33 1 -0.4803 -4.5445 -2.1952 34 1 0.7271 -5.9339 -0.5597 35 1 2.5149 -4.9454 0.8142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076667933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:24 Heat of formation + Delta-G solvation = -29.899742 kcal Electronic energy + Delta-G solvation = -19398.848557 eV Core-core repulsion = 16228.927773 eV Total energy + Delta-G solvation = -3169.920784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68763 -40.02333 -37.61743 -37.20930 -35.84640 -33.27300 -32.70302 -31.57514 -29.33712 -27.99178 -26.56538 -23.96586 -23.53563 -21.84310 -20.95881 -19.83848 -18.08295 -17.60220 -16.89526 -16.69171 -16.48777 -16.17456 -15.95359 -15.53756 -15.01342 -14.97008 -14.64987 -14.14836 -13.88893 -13.63490 -13.45084 -13.10196 -12.89271 -12.65588 -12.51790 -12.40883 -12.33803 -12.29911 -12.13029 -12.08070 -11.52831 -11.44827 -10.26129 -9.97567 -9.84480 -9.55115 -9.13026 -8.44960 -5.93168 0.26416 0.34930 1.36760 1.37905 1.41532 1.55817 2.08667 2.29214 2.60954 3.00797 3.22090 3.45683 3.74879 3.88097 4.16075 4.25512 4.28977 4.38730 4.47323 4.50688 4.53962 4.60808 4.70515 4.73528 4.83599 5.03242 5.19326 5.36306 5.42744 5.47002 5.52068 5.88860 5.94844 6.10307 6.21594 6.63462 7.15642 7.59426 8.15990 8.72848 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032922 B = 0.003699 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.296343 B = 7567.642243 C = 7817.114993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.525 5.525 3 C 0.060 3.940 4 C 0.444 3.556 5 O -0.612 6.612 6 N -0.576 5.576 7 C -0.329 4.329 8 H 0.077 0.923 9 C -0.014 4.014 10 N -0.922 5.922 11 Si 0.992 3.008 12 H -0.274 1.274 13 H -0.272 1.272 14 H -0.270 1.270 15 C 0.093 3.907 16 C -0.085 4.085 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.128 4.128 21 C -0.033 4.033 22 Cl -0.078 7.078 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.395 0.605 29 H 0.277 0.723 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -18.158 -11.667 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.249 5.249 3 C -0.071 4.071 4 C 0.232 3.768 5 O -0.498 6.498 6 N -0.214 5.214 7 C -0.459 4.459 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.563 5.563 11 Si 0.815 3.185 12 H -0.199 1.199 13 H -0.197 1.197 14 H -0.195 1.195 15 C -0.034 4.034 16 C -0.086 4.086 17 C -0.124 4.124 18 C -0.135 4.135 19 C -0.126 4.126 20 C -0.146 4.146 21 C -0.060 4.060 22 Cl -0.050 7.050 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.229 0.771 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.163 0.837 33 H 0.174 0.826 34 H 0.175 0.825 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.868 -18.516 -10.591 21.412 hybrid contribution 0.156 1.414 0.056 1.424 sum -1.712 -17.102 -10.534 20.159 Atomic orbital electron populations 1.22349 0.86869 1.01897 1.00364 1.61464 1.08675 1.11911 1.42886 1.21707 1.01843 0.89426 0.94163 1.20740 0.83582 0.82133 0.90385 1.90469 1.45028 1.65273 1.48983 1.41933 1.50216 1.11631 1.17644 1.19673 1.34205 0.96375 0.95644 0.90460 1.26007 0.96356 0.96622 1.02328 1.69680 1.38309 1.12651 1.35674 0.84891 0.78226 0.77905 0.77434 1.19897 1.19693 1.19528 1.21101 1.00948 0.89366 0.91943 1.19744 0.97061 0.95240 0.96578 1.21317 0.95637 0.96308 0.99163 1.21573 1.00099 0.93380 0.98458 1.21469 0.94578 1.01515 0.95001 1.21314 0.99389 0.92754 1.01186 1.21070 0.94664 0.94323 0.95950 1.98384 1.51210 1.85042 1.70319 0.91331 0.92770 0.94785 0.87763 0.91170 0.77097 0.91385 0.89643 0.91826 0.83678 0.82568 0.82472 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 8.98 127.69 1.15 2.24 16 2 N -0.53 -17.56 4.37 -931.67 -4.07 -21.63 16 3 C 0.06 2.14 5.45 85.56 0.47 2.60 16 4 C 0.44 21.69 7.47 87.66 0.66 22.35 16 5 O -0.61 -34.59 13.91 -3.05 -0.04 -34.63 16 6 N -0.58 -30.25 5.29 -306.99 -1.62 -31.87 16 7 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 10 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 11 Si 0.99 43.79 29.55 68.60 2.03 45.81 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 C 0.09 2.38 4.43 85.55 0.38 2.75 16 16 C -0.08 -2.04 4.42 -19.84 -0.09 -2.13 16 17 C -0.11 -1.94 9.12 22.27 0.20 -1.74 16 18 C -0.12 -1.75 10.05 22.27 0.22 -1.52 16 19 C -0.11 -1.68 10.05 22.26 0.22 -1.46 16 20 C -0.13 -2.66 9.83 22.29 0.22 -2.44 16 21 C -0.03 -0.85 6.31 22.32 0.14 -0.71 16 22 Cl -0.08 -2.35 27.55 -2.72 -0.07 -2.42 16 23 H 0.07 2.08 6.88 -2.39 -0.02 2.07 16 24 H 0.05 2.26 5.82 -2.39 -0.01 2.24 16 25 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.10 3.39 7.93 -2.39 -0.02 3.37 16 27 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 28 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 29 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.09 2.17 7.39 -2.39 -0.02 2.15 16 31 H 0.06 1.34 7.93 -2.39 -0.02 1.32 16 32 H 0.15 2.07 8.00 -2.91 -0.02 2.05 16 33 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -69.61 314.09 1.72 -67.89 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.38 Total: 25.69 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 4.85 Total: 1.40 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -5.41 Total: -103.73 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.04 Total: -34.63 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.07 Total: -2.42 kcal Total: -69.61 1.72 -67.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076667933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.987 kcal (2) G-P(sol) polarization free energy of solvation -69.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds