Wall clock time and date at job start Tue Mar 31 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00006 * 2 1 4 4 C 1.50699 * 109.47303 * 66.04550 * 3 2 1 5 5 O 1.21291 * 119.99900 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00042 * 179.97438 * 4 3 2 7 7 C 1.37096 * 119.99857 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00518 * 0.02562 * 7 6 4 9 9 C 1.38957 * 120.00107 * 180.02562 * 7 6 4 10 10 N 1.31412 * 119.99501 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00162 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47147 * 89.99808 * 11 9 7 13 13 H 1.48501 * 109.46968 * 209.99874 * 11 9 7 14 14 H 1.48494 * 109.47104 * 329.99819 * 11 9 7 15 15 C 1.46896 * 111.00109 * 236.04341 * 2 1 3 16 16 C 1.50702 * 109.47203 * 293.95809 * 15 2 1 17 17 C 1.38270 * 119.99101 * 270.27514 * 16 15 2 18 18 C 1.38215 * 120.02537 * 180.27948 * 17 16 15 19 19 C 1.38238 * 120.01126 * 359.44038 * 18 17 16 20 20 C 1.38325 * 119.98878 * 0.28199 * 19 18 17 21 21 Cl 1.73606 * 120.01335 * 179.97438 * 20 19 18 22 22 C 1.38193 * 119.99765 * 89.99917 * 16 15 2 23 23 H 1.08997 * 109.47014 * 183.95648 * 1 2 3 24 24 H 1.08999 * 109.47279 * 303.95454 * 1 2 3 25 25 H 1.09000 * 109.47184 * 63.95525 * 1 2 3 26 26 H 1.09003 * 109.47147 * 186.04708 * 3 2 1 27 27 H 1.08997 * 109.47056 * 306.04082 * 3 2 1 28 28 H 0.97001 * 119.99991 * 359.97438 * 6 4 3 29 29 H 0.97003 * 119.99774 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.47506 * 173.95314 * 15 2 1 31 31 H 1.09000 * 109.47057 * 53.95215 * 15 2 1 32 32 H 1.07997 * 119.98420 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.99636 * 179.72646 * 18 17 16 34 34 H 1.07999 * 120.00577 * 180.25936 * 19 18 17 35 35 H 1.08003 * 120.00423 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0046 1.4456 2.1407 6 7 2.0189 3.3198 1.5237 7 6 1.6923 3.9347 2.7047 8 1 1.1293 3.3992 3.4547 9 6 2.0856 5.2471 2.9367 10 7 2.7711 5.8986 2.0243 11 14 1.6412 6.0847 4.5462 12 1 2.7179 5.8480 5.5411 13 1 1.4891 7.5443 4.3190 14 1 0.3634 5.5275 5.0578 15 6 1.9955 -0.7660 -1.1375 16 6 1.6369 -2.2204 -0.9728 17 6 2.4914 -3.0706 -0.2953 18 6 2.1660 -4.4058 -0.1489 19 6 0.9804 -4.8897 -0.6696 20 6 0.1224 -4.0385 -1.3424 21 17 -1.3664 -4.6457 -1.9972 22 6 0.4514 -2.7031 -1.4938 23 1 -0.3633 -1.0252 0.0709 24 1 -0.3634 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0798 1.3444 -0.1083 27 1 1.5612 1.9273 -0.8309 28 1 2.5249 3.8008 0.8502 29 1 3.0454 6.8149 2.1861 30 1 3.0797 -0.6611 -1.1756 31 1 1.5611 -0.3873 -2.0627 32 1 3.4154 -2.6919 0.1159 33 1 2.8359 -5.0704 0.3765 34 1 0.7242 -5.9322 -0.5514 35 1 -0.2179 -2.0381 -2.0194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076667960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:28 Heat of formation + Delta-G solvation = -11.697242 kcal Electronic energy + Delta-G solvation = -19051.306039 eV Core-core repulsion = 15882.174575 eV Total energy + Delta-G solvation = -3169.131465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72697 -38.44431 -36.77357 -36.09683 -33.86845 -31.75605 -31.21275 -30.86809 -27.83248 -26.99819 -24.73786 -22.80563 -22.67575 -20.90980 -19.16164 -17.84463 -17.08807 -16.13386 -15.85342 -15.58260 -15.18557 -14.69444 -14.59469 -14.00515 -13.81874 -13.57141 -13.51790 -13.28190 -12.80249 -12.12996 -11.93841 -11.66114 -11.59653 -11.49418 -11.37354 -11.23616 -11.20625 -10.93036 -10.86997 -10.38982 -10.21406 -9.47155 -9.06117 -8.79853 -8.45814 -7.97328 -7.85141 -6.41363 -3.81995 1.05313 1.12162 1.98000 3.18231 3.26831 3.32522 3.44335 3.91174 4.10904 4.31844 4.61357 4.65719 4.89338 5.04194 5.15746 5.20265 5.25402 5.33520 5.47404 5.62793 5.71456 5.73333 5.79588 5.95835 5.98170 6.06633 6.20454 6.28294 6.43977 6.57019 6.67157 7.24940 7.34671 7.55795 8.07027 8.62564 9.18858 9.55075 10.07137 10.76459 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036695 B = 0.003001 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.860703 B = 9328.058629 C = 9487.569334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.513 5.513 3 C 0.045 3.955 4 C 0.444 3.556 5 O -0.576 6.576 6 N -0.565 5.565 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.089 3.911 16 C -0.056 4.056 17 C -0.091 4.091 18 C -0.109 4.109 19 C -0.115 4.115 20 C -0.036 4.036 21 Cl -0.078 7.078 22 C -0.103 4.103 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.014 0.986 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.392 0.608 29 H 0.271 0.729 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.851 -17.024 -10.174 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.236 5.236 3 C -0.086 4.086 4 C 0.230 3.770 5 O -0.460 6.460 6 N -0.201 5.201 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.038 4.038 16 C -0.057 4.057 17 C -0.110 4.110 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.063 4.063 21 Cl -0.049 7.049 22 C -0.122 4.122 23 H 0.080 0.920 24 H 0.115 0.885 25 H 0.033 0.967 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.225 0.775 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.187 -17.487 -9.225 19.807 hybrid contribution -0.270 1.140 -0.452 1.255 sum -1.457 -16.347 -9.677 19.053 Atomic orbital electron populations 1.22613 0.86635 1.02212 1.01410 1.61595 1.08915 1.12702 1.40414 1.21884 1.00706 0.88699 0.97290 1.19713 0.85474 0.82935 0.88922 1.90492 1.43812 1.64626 1.47096 1.41862 1.49441 1.10764 1.18076 1.19699 1.32881 0.95436 0.94763 0.87920 1.25256 0.96845 0.96643 0.99206 1.69613 1.38104 1.12268 1.34415 0.85861 0.79107 0.78039 0.81314 1.20403 1.20962 1.19423 1.21122 1.00802 0.89346 0.92566 1.19730 0.93649 0.95600 0.96711 1.21183 1.00041 0.92954 0.96809 1.21113 0.96320 0.95827 0.99483 1.21014 0.94174 0.99721 0.98500 1.20858 0.89388 0.94284 1.01734 1.98363 1.33610 1.87997 1.84941 1.20971 0.97022 0.93456 1.00796 0.91955 0.88506 0.96745 0.89296 0.93357 0.77502 0.91896 0.89581 0.93942 0.85090 0.85113 0.85245 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.78 60.07 0.53 0.84 16 2 N -0.51 -8.46 4.49 -245.83 -1.10 -9.56 16 3 C 0.05 0.79 5.45 -4.98 -0.03 0.77 16 4 C 0.44 10.40 7.47 -10.99 -0.08 10.31 16 5 O -0.58 -15.48 13.91 5.55 0.08 -15.40 16 6 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 10 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 11 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.09 1.12 5.12 -4.98 -0.03 1.09 16 16 C -0.06 -0.68 4.88 -104.63 -0.51 -1.19 16 17 C -0.09 -1.02 9.70 -39.58 -0.38 -1.40 16 18 C -0.11 -1.07 10.05 -39.59 -0.40 -1.47 16 19 C -0.12 -1.16 9.83 -39.55 -0.39 -1.55 16 20 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 21 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 22 C -0.10 -1.21 7.75 -39.55 -0.31 -1.51 16 23 H 0.06 0.97 6.17 -51.93 -0.32 0.65 16 24 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 27 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.09 0.95 7.88 -51.93 -0.41 0.55 16 31 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.13 1.43 8.03 -52.48 -0.42 1.01 16 LS Contribution 314.79 15.07 4.74 4.74 Total: -1.00 -30.76 314.79 -8.46 -39.21 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.23 Total: 8.03 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.09 Total: -2.70 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.44 Total: -47.57 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.08 Total: -15.40 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.76 -8.46 -39.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076667960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.516 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds