Wall clock time and date at job start Tue Mar 31 2020 06:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 119.99871 * 2 1 4 4 C 1.50703 * 109.47240 * 270.00360 * 3 2 1 5 5 H 1.08004 * 119.99971 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99918 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00199 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99720 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47072 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46603 * 120.00309 * 8 6 4 11 11 H 1.48498 * 109.47224 * 240.00190 * 8 6 4 12 12 C 1.34771 * 120.00136 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00047 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00031 * 359.97438 * 12 2 1 15 15 N 1.46508 * 109.47117 * 180.02562 * 14 12 2 16 16 C 1.39668 * 119.99761 * 180.02562 * 15 14 12 17 17 C 1.38940 * 120.06905 * 359.97431 * 16 15 14 18 18 C 1.38093 * 119.94924 * 180.02562 * 17 16 15 19 19 C 1.38288 * 120.08810 * 359.97438 * 18 17 16 20 20 C 1.38387 * 120.13771 * 0.04117 * 19 18 17 21 21 Cl 1.73596 * 119.97635 * 180.02562 * 20 19 18 22 22 C 1.38245 * 120.04856 * 359.96022 * 20 19 18 23 23 H 1.09002 * 109.46714 * 269.99688 * 1 2 3 24 24 H 1.08999 * 109.47913 * 29.99473 * 1 2 3 25 25 H 1.08998 * 109.47294 * 150.00363 * 1 2 3 26 26 H 1.08997 * 109.47480 * 30.00238 * 3 2 1 27 27 H 1.09000 * 109.47088 * 150.00733 * 3 2 1 28 28 H 0.96994 * 120.00181 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46745 * 60.00650 * 14 12 2 30 30 H 1.08999 * 109.47113 * 299.99997 * 14 12 2 31 31 H 0.97003 * 119.99842 * 359.97438 * 15 14 12 32 32 H 1.07996 * 120.02748 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.95540 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.92927 * 180.02562 * 19 18 17 35 35 H 1.07995 * 120.04656 * 180.29874 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0972 1.0963 -2.2418 6 6 3.1258 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6731 8 14 3.4377 3.4171 -3.4340 9 1 2.8606 2.4166 -4.3673 10 1 2.7995 4.7375 -3.6678 11 1 4.9002 3.5260 -3.6667 12 6 2.1388 -1.1671 -0.0005 13 8 3.3516 -1.1671 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 7 2.3374 -3.5858 -0.0005 16 6 1.8719 -4.9026 -0.0011 17 6 0.5062 -5.1581 -0.0011 18 6 0.0486 -6.4610 -0.0011 19 6 0.9478 -7.5117 -0.0016 20 6 2.3088 -7.2613 -0.0013 21 17 3.4339 -8.5833 -0.0026 22 6 2.7732 -5.9592 -0.0012 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3635 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5137 28 1 4.0299 4.4441 -0.8503 29 1 0.7585 -2.5298 -0.8903 30 1 0.7590 -2.5302 0.8897 31 1 3.2911 -3.4085 -0.0009 32 1 -0.1970 -4.3385 -0.0011 33 1 -1.0130 -6.6598 -0.0006 34 1 0.5871 -8.5296 -0.0020 35 1 3.8353 -5.7638 -0.0059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078635213.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:56 Heat of formation + Delta-G solvation = -33.957406 kcal Electronic energy + Delta-G solvation = -18928.025647 eV Core-core repulsion = 15757.928909 eV Total energy + Delta-G solvation = -3170.096738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.01070 -40.11708 -37.58392 -36.77577 -35.99035 -34.75135 -31.88477 -31.06757 -29.77450 -27.80693 -27.06693 -24.71902 -23.66278 -22.46155 -20.23969 -18.92775 -18.71340 -17.72039 -17.41231 -16.79862 -16.73825 -16.55845 -15.89789 -15.34082 -15.10218 -14.86671 -14.46541 -14.41941 -14.04600 -13.90511 -13.65217 -13.48012 -13.12188 -12.82594 -12.64946 -12.57314 -12.52171 -12.23771 -12.22641 -11.83933 -11.70373 -11.03193 -10.77891 -10.67235 -9.72005 -9.48734 -8.46138 -8.25158 -6.39875 0.30594 0.58683 1.17314 1.35545 1.37935 1.49290 1.69036 2.05048 2.36544 2.63669 2.83328 3.05094 3.57407 3.96438 4.16553 4.27932 4.30208 4.34886 4.47080 4.52391 4.59729 4.74733 4.88838 4.96062 5.00689 5.19854 5.23608 5.40739 5.51603 5.54828 5.72558 5.79818 6.02403 6.25305 6.58094 6.67504 6.74265 7.22506 7.37088 8.82180 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.003098 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.028290 B = 9034.729161 C = 9479.344315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.604 5.604 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.269 1.269 11 H -0.283 1.283 12 C 0.488 3.512 13 O -0.594 6.594 14 C 0.122 3.878 15 N -0.740 5.740 16 C 0.222 3.778 17 C -0.200 4.200 18 C -0.052 4.052 19 C -0.179 4.179 20 C 0.004 3.996 21 Cl -0.079 7.079 22 C -0.209 4.209 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.027 0.973 27 H -0.002 1.002 28 H 0.267 0.733 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.402 0.598 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 -20.424 1.704 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.334 5.334 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.194 1.194 11 H -0.209 1.209 12 C 0.276 3.724 13 O -0.475 6.475 14 C -0.005 4.005 15 N -0.371 5.371 16 C 0.117 3.883 17 C -0.222 4.222 18 C -0.070 4.070 19 C -0.199 4.199 20 C -0.023 4.023 21 Cl -0.050 7.050 22 C -0.233 4.233 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.045 0.955 27 H 0.016 0.984 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.239 0.761 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.163 0.837 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.111 -20.174 1.756 23.099 hybrid contribution 1.394 0.825 -0.669 1.753 sum -9.717 -19.349 1.087 21.680 Atomic orbital electron populations 1.22059 0.77259 1.04530 1.03130 1.48114 1.08746 1.06064 1.70524 1.18796 0.91207 0.80298 0.96069 1.21732 1.36816 1.06508 0.93055 0.92721 1.25857 0.94935 0.96488 1.01901 1.70048 1.38933 1.14851 1.32982 0.85370 0.77810 0.78457 0.79182 1.19062 1.19387 1.20934 1.21183 0.87920 0.86774 0.76485 1.90642 1.16498 1.87708 1.52699 1.21176 0.91684 0.82242 1.05444 1.44575 1.09248 1.01698 1.81580 1.17807 0.93554 0.83361 0.93529 1.21100 0.92715 0.99061 1.09361 1.21218 1.00891 0.90585 0.94352 1.21079 0.90181 1.01307 1.07382 1.20718 0.91178 0.87725 1.02700 1.98357 1.62397 1.47344 1.96889 1.20466 0.99782 0.90676 1.12374 0.90530 0.91333 0.88183 0.95454 0.98395 0.92379 0.86918 0.86351 0.76106 0.83310 0.81850 0.83726 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.84 10.24 127.77 1.31 3.15 16 2 N -0.60 -23.76 2.86 -851.15 -2.43 -26.19 16 3 C 0.26 13.47 5.16 85.63 0.44 13.92 16 4 C -0.54 -30.59 9.39 25.60 0.24 -30.35 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.41 5.46 84.66 0.46 0.87 16 7 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 8 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 C 0.49 18.77 7.74 87.66 0.68 19.45 16 13 O -0.59 -29.25 15.25 -3.04 -0.05 -29.30 16 14 C 0.12 3.00 3.94 85.63 0.34 3.34 16 15 N -0.74 -19.94 5.70 -343.13 -1.96 -21.90 16 16 C 0.22 5.18 6.65 38.21 0.25 5.43 16 17 C -0.20 -3.51 9.31 22.40 0.21 -3.30 16 18 C -0.05 -0.76 10.04 22.25 0.22 -0.53 16 19 C -0.18 -3.07 9.83 22.32 0.22 -2.85 16 20 C 0.00 0.08 6.32 22.31 0.14 0.23 16 21 Cl -0.08 -1.62 28.95 -2.72 -0.08 -1.70 16 22 C -0.21 -5.03 9.68 22.42 0.22 -4.82 16 23 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.90 8.07 -2.39 -0.02 1.88 16 25 H 0.10 1.72 6.44 -2.39 -0.02 1.70 16 26 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 27 H 0.00 -0.13 7.42 -2.39 -0.02 -0.14 16 28 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.11 2.22 7.21 -2.39 -0.02 2.20 16 30 H 0.12 2.17 7.92 -2.39 -0.02 2.15 16 31 H 0.40 12.71 7.45 -92.71 -0.69 12.02 16 32 H 0.15 1.90 6.73 -2.91 -0.02 1.88 16 33 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.12 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -72.71 318.41 2.95 -69.76 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.42 Total: 13.67 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 4.73 Total: 4.53 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -4.10 Total: -103.35 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.05 Total: -29.30 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -72.71 2.95 -69.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078635213.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.799 kcal (2) G-P(sol) polarization free energy of solvation -72.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds