Wall clock time and date at job start Tue Mar 31 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47072 * 2 1 4 4 N 1.46502 * 109.46745 * 119.99741 * 2 1 3 5 5 C 1.46499 * 119.99647 * 123.72037 * 4 2 1 6 6 C 1.50699 * 109.47064 * 262.88893 * 5 4 2 7 7 H 1.08003 * 119.99931 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00240 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99748 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00205 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46672 * 89.99912 * 10 8 6 12 12 H 1.48497 * 109.47271 * 210.00066 * 10 8 6 13 13 H 1.48500 * 109.47354 * 330.00301 * 10 8 6 14 14 C 1.34778 * 120.00196 * 303.71506 * 4 2 1 15 15 O 1.21527 * 119.99781 * 3.21151 * 14 4 2 16 16 C 1.48110 * 119.99953 * 183.21102 * 14 4 2 17 17 C 1.39347 * 119.70309 * 172.95022 * 16 14 4 18 18 C 1.38524 * 119.07416 * 179.97438 * 17 16 14 19 19 C 1.38775 * 118.47969 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.33887 * 179.97438 * 19 18 17 21 21 C 1.38721 * 119.32131 * 359.97438 * 19 18 17 22 22 N 1.31487 * 120.87858 * 359.72796 * 21 19 18 23 23 H 1.08994 * 109.47597 * 305.55683 * 1 2 3 24 24 H 1.09003 * 109.46878 * 65.55963 * 1 2 3 25 25 H 1.09000 * 109.47057 * 185.55457 * 1 2 3 26 26 H 1.08999 * 109.47439 * 239.99519 * 2 1 3 27 27 H 1.08997 * 109.46990 * 184.91465 * 3 2 1 28 28 H 1.08996 * 109.47004 * 304.91888 * 3 2 1 29 29 H 1.08999 * 109.46930 * 64.91578 * 3 2 1 30 30 H 1.08994 * 109.47824 * 22.89183 * 5 4 2 31 31 H 1.09006 * 109.46781 * 142.89126 * 5 4 2 32 32 H 0.97007 * 119.99383 * 180.02562 * 9 8 6 33 33 H 1.08002 * 120.46590 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.76201 * 180.02562 * 18 17 16 35 35 H 1.07998 * 119.55830 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.9264 -1.8324 1.0634 6 6 2.1369 -3.1137 1.1400 7 1 1.0658 -3.0808 1.2747 8 6 2.7821 -4.3281 1.0393 9 7 4.0865 -4.3682 0.8768 10 14 1.8035 -5.9164 1.1350 11 1 1.3708 -6.3141 -0.2288 12 1 2.6527 -6.9867 1.7168 13 1 0.6090 -5.7110 1.9930 14 6 1.6321 -0.2754 2.4189 15 8 0.8334 0.6342 2.5275 16 6 2.1809 -0.9276 3.6301 17 6 1.8941 -0.4011 4.8880 18 6 2.4138 -1.0219 6.0120 19 6 3.2042 -2.1493 5.8394 20 17 3.8808 -2.9648 7.2146 21 6 3.4483 -2.6180 4.5568 22 7 2.9369 -2.0118 3.5081 23 1 -0.3634 0.5975 0.8360 24 1 -0.3633 0.4252 -0.9356 25 1 -0.3633 -1.0228 0.0995 26 1 1.8934 -0.5139 -0.8899 27 1 3.1264 1.4438 -0.0880 28 1 1.6065 1.9812 -0.8426 29 1 1.7504 1.9303 0.9307 30 1 3.4397 -1.7788 0.1033 31 1 3.6600 -1.8088 1.8693 32 1 4.5403 -5.2226 0.8056 33 1 1.2752 0.4786 4.9852 34 1 2.2085 -0.6372 7.0001 35 1 4.0626 -3.4954 4.4181 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079729396.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:41 Heat of formation + Delta-G solvation = 11.420651 kcal Electronic energy + Delta-G solvation = -20464.058155 eV Core-core repulsion = 17295.929157 eV Total energy + Delta-G solvation = -3168.128997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31286 -38.68804 -36.48061 -35.47626 -33.23585 -32.21638 -31.51331 -30.29545 -26.89526 -26.65288 -24.37542 -23.40576 -22.65799 -21.48508 -18.98570 -16.84526 -16.55460 -16.28908 -16.11474 -15.03017 -14.79362 -14.52602 -14.22457 -13.73068 -13.56845 -13.19608 -12.93616 -12.71334 -12.25376 -12.11756 -11.80525 -11.71871 -11.47924 -11.40126 -11.08006 -10.89926 -10.85564 -10.69941 -10.45450 -10.08122 -9.66085 -9.54833 -9.14839 -8.67971 -8.61563 -8.15518 -7.62803 -6.01133 -4.00045 0.89023 1.48002 2.13891 3.25562 3.29324 3.35908 3.40441 3.77545 4.27876 4.44165 4.74784 4.91754 5.01725 5.17900 5.35047 5.39074 5.53756 5.67208 5.80457 5.95566 6.06931 6.10265 6.11411 6.21541 6.33387 6.41863 6.68323 6.71379 6.82437 6.94547 7.53761 7.76929 7.91196 8.21502 8.29396 8.35064 8.89450 9.03216 9.59756 11.06834 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.011952 B = 0.008395 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.113902 B = 3334.466662 C = 5129.280201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.143 3.857 3 C -0.164 4.164 4 N -0.568 5.568 5 C 0.226 3.774 6 C -0.496 4.496 7 H 0.051 0.949 8 C 0.069 3.931 9 N -0.890 5.890 10 Si 0.883 3.117 11 H -0.282 1.282 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.567 3.433 15 O -0.565 6.565 16 C 0.084 3.916 17 C -0.112 4.112 18 C -0.089 4.089 19 C -0.078 4.078 20 Cl -0.068 7.068 21 C 0.109 3.891 22 N -0.362 5.362 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.083 0.917 32 H 0.260 0.740 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 6.367 6.857 9.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 C -0.222 4.222 4 N -0.296 5.296 5 C 0.107 3.893 6 C -0.535 4.535 7 H 0.069 0.931 8 C -0.133 4.133 9 N -0.530 5.530 10 Si 0.711 3.289 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.353 3.647 15 O -0.446 6.446 16 C -0.054 4.054 17 C -0.133 4.133 18 C -0.115 4.115 19 C -0.108 4.108 20 Cl -0.040 7.040 21 C -0.051 4.051 22 N -0.073 5.073 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.821 6.305 6.105 8.814 hybrid contribution -0.565 -1.071 1.000 1.571 sum -1.386 5.234 7.105 8.933 Atomic orbital electron populations 1.22197 0.95400 1.02668 1.02095 1.20963 0.94480 0.92400 0.88180 1.22166 1.00649 0.96709 1.02670 1.48390 1.45857 1.31691 1.03677 1.20163 0.89241 0.81088 0.98792 1.21238 0.93515 0.90447 1.48330 0.93103 1.24744 0.94669 0.98319 0.95551 1.69923 1.07382 1.25504 1.50156 0.86744 0.80142 0.83809 0.78188 1.20841 1.21188 1.20202 1.17739 0.81501 0.82396 0.83021 1.90621 1.35650 1.31651 1.86707 1.21547 0.96584 0.93440 0.93833 1.22045 0.99132 1.00889 0.91239 1.21349 0.96252 0.94063 0.99862 1.22513 1.01151 0.97085 0.90014 1.98356 1.84011 1.78614 1.42971 1.23221 0.97270 0.99262 0.85330 1.69050 1.04397 1.04573 1.29245 0.90350 0.93019 0.92534 0.89590 0.93027 0.92380 0.91236 0.95747 0.90040 0.93025 0.83384 0.83974 0.81642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 8.94 37.16 0.33 -2.55 16 2 C 0.14 2.63 3.27 -67.92 -0.22 2.41 16 3 C -0.16 -2.60 9.24 37.16 0.34 -2.26 16 4 N -0.57 -12.01 2.43 -168.47 -0.41 -12.42 16 5 C 0.23 5.40 4.76 -5.19 -0.02 5.37 16 6 C -0.50 -12.86 7.95 -34.44 -0.27 -13.13 16 7 H 0.05 1.38 7.81 -52.48 -0.41 0.97 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -24.10 13.29 55.43 0.74 -23.37 16 10 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.57 11.84 6.98 -12.21 -0.09 11.76 16 15 O -0.56 -11.88 12.64 5.34 0.07 -11.81 16 16 C 0.08 1.65 6.62 -83.02 -0.55 1.10 16 17 C -0.11 -1.79 9.63 -39.06 -0.38 -2.16 16 18 C -0.09 -1.23 9.97 -39.28 -0.39 -1.62 16 19 C -0.08 -1.18 6.35 -39.20 -0.25 -1.43 16 20 Cl -0.07 -0.89 28.99 -51.86 -1.50 -2.39 16 21 C 0.11 1.95 10.98 -17.52 -0.19 1.76 16 22 N -0.36 -7.49 4.98 -9.77 -0.05 -7.54 16 23 H 0.08 1.46 6.02 -51.93 -0.31 1.14 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.09 1.56 7.73 -51.93 -0.40 1.16 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.20 6.45 -51.93 -0.33 0.86 16 30 H 0.02 0.62 7.81 -51.93 -0.41 0.21 16 31 H 0.08 2.03 5.25 -52.17 -0.27 1.75 16 32 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.15 2.14 7.66 -52.49 -0.40 1.73 16 34 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.17 2.92 8.06 -52.49 -0.42 2.50 16 LS Contribution 309.04 15.07 4.66 4.66 Total: -1.00 -27.80 309.04 -7.52 -35.32 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.21 Total: 0.78 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.79 Total: 0.94 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.28 Total: -43.32 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.80 -7.52 -35.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729396.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.739 kcal (2) G-P(sol) polarization free energy of solvation -27.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds