Wall clock time and date at job start Tue Mar 31 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47072 * 2 1 4 4 N 1.46502 * 109.46745 * 119.99741 * 2 1 3 5 5 C 1.46499 * 119.99647 * 123.72037 * 4 2 1 6 6 C 1.50699 * 109.47064 * 262.88893 * 5 4 2 7 7 H 1.08003 * 119.99931 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00240 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99748 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00205 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46672 * 89.99912 * 10 8 6 12 12 H 1.48497 * 109.47271 * 210.00066 * 10 8 6 13 13 H 1.48500 * 109.47354 * 330.00301 * 10 8 6 14 14 C 1.34778 * 120.00196 * 303.71506 * 4 2 1 15 15 O 1.21527 * 119.99781 * 3.21151 * 14 4 2 16 16 C 1.48110 * 119.99953 * 183.21102 * 14 4 2 17 17 C 1.39347 * 119.70309 * 172.95022 * 16 14 4 18 18 C 1.38524 * 119.07416 * 179.97438 * 17 16 14 19 19 C 1.38775 * 118.47969 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.33887 * 179.97438 * 19 18 17 21 21 C 1.38721 * 119.32131 * 359.97438 * 19 18 17 22 22 N 1.31487 * 120.87858 * 359.72796 * 21 19 18 23 23 H 1.08994 * 109.47597 * 305.55683 * 1 2 3 24 24 H 1.09003 * 109.46878 * 65.55963 * 1 2 3 25 25 H 1.09000 * 109.47057 * 185.55457 * 1 2 3 26 26 H 1.08999 * 109.47439 * 239.99519 * 2 1 3 27 27 H 1.08997 * 109.46990 * 184.91465 * 3 2 1 28 28 H 1.08996 * 109.47004 * 304.91888 * 3 2 1 29 29 H 1.08999 * 109.46930 * 64.91578 * 3 2 1 30 30 H 1.08994 * 109.47824 * 22.89183 * 5 4 2 31 31 H 1.09006 * 109.46781 * 142.89126 * 5 4 2 32 32 H 0.97007 * 119.99383 * 180.02562 * 9 8 6 33 33 H 1.08002 * 120.46590 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.76201 * 180.02562 * 18 17 16 35 35 H 1.07998 * 119.55830 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.9264 -1.8324 1.0634 6 6 2.1369 -3.1137 1.1400 7 1 1.0658 -3.0808 1.2747 8 6 2.7821 -4.3281 1.0393 9 7 4.0865 -4.3682 0.8768 10 14 1.8035 -5.9164 1.1350 11 1 1.3708 -6.3141 -0.2288 12 1 2.6527 -6.9867 1.7168 13 1 0.6090 -5.7110 1.9930 14 6 1.6321 -0.2754 2.4189 15 8 0.8334 0.6342 2.5275 16 6 2.1809 -0.9276 3.6301 17 6 1.8941 -0.4011 4.8880 18 6 2.4138 -1.0219 6.0120 19 6 3.2042 -2.1493 5.8394 20 17 3.8808 -2.9648 7.2146 21 6 3.4483 -2.6180 4.5568 22 7 2.9369 -2.0118 3.5081 23 1 -0.3634 0.5975 0.8360 24 1 -0.3633 0.4252 -0.9356 25 1 -0.3633 -1.0228 0.0995 26 1 1.8934 -0.5139 -0.8899 27 1 3.1264 1.4438 -0.0880 28 1 1.6065 1.9812 -0.8426 29 1 1.7504 1.9303 0.9307 30 1 3.4397 -1.7788 0.1033 31 1 3.6600 -1.8088 1.8693 32 1 4.5403 -5.2226 0.8056 33 1 1.2752 0.4786 4.9852 34 1 2.2085 -0.6372 7.0001 35 1 4.0626 -3.4954 4.4181 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079729396.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:41 Heat of formation + Delta-G solvation = -2.770988 kcal Electronic energy + Delta-G solvation = -20464.673550 eV Core-core repulsion = 17295.929157 eV Total energy + Delta-G solvation = -3168.744393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.75703 -40.16087 -37.65046 -37.09401 -34.96948 -33.76308 -33.00704 -31.71102 -28.78262 -28.01264 -25.86061 -24.72538 -24.49516 -22.93764 -20.44518 -18.59861 -18.07851 -17.87480 -17.53827 -16.50722 -16.39126 -16.22739 -15.83463 -15.09040 -14.96583 -14.55163 -14.43652 -14.23386 -13.93230 -13.53712 -13.29793 -13.14971 -13.03852 -12.75960 -12.71033 -12.62918 -12.27099 -12.15771 -12.09029 -11.83329 -11.54915 -10.88256 -10.72164 -10.48684 -10.00267 -9.77194 -9.31384 -8.02839 -6.07534 -0.45737 0.22882 0.93813 1.38946 1.42335 1.49325 1.76949 2.25785 2.49069 2.85279 3.29240 3.31003 3.67692 3.74158 3.91668 4.04920 4.16482 4.27654 4.40419 4.69051 4.74275 4.80543 4.81653 4.89103 4.99210 5.01796 5.16873 5.32164 5.36779 5.42084 5.61921 5.92220 6.02466 6.30693 6.59353 6.83390 7.01058 7.33664 7.56018 9.04185 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.011952 B = 0.008395 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.113902 B = 3334.466662 C = 5129.280201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.131 3.869 3 C -0.151 4.151 4 N -0.577 5.577 5 C 0.243 3.757 6 C -0.496 4.496 7 H 0.032 0.968 8 C 0.034 3.966 9 N -0.913 5.913 10 Si 0.933 3.067 11 H -0.279 1.279 12 H -0.280 1.280 13 H -0.282 1.282 14 C 0.561 3.439 15 O -0.571 6.571 16 C 0.052 3.948 17 C -0.101 4.101 18 C -0.070 4.070 19 C -0.068 4.068 20 Cl -0.043 7.043 21 C 0.092 3.908 22 N -0.401 5.401 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.033 0.967 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.003 0.997 31 H 0.075 0.925 32 H 0.261 0.739 33 H 0.166 0.834 34 H 0.186 0.814 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 6.963 8.319 10.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 C -0.209 4.209 4 N -0.305 5.305 5 C 0.122 3.878 6 C -0.535 4.535 7 H 0.050 0.950 8 C -0.165 4.165 9 N -0.554 5.554 10 Si 0.760 3.240 11 H -0.205 1.205 12 H -0.205 1.205 13 H -0.208 1.208 14 C 0.349 3.651 15 O -0.453 6.453 16 C -0.085 4.085 17 C -0.122 4.122 18 C -0.096 4.096 19 C -0.097 4.097 20 Cl -0.014 7.014 21 C -0.068 4.068 22 N -0.112 5.112 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.183 0.817 34 H 0.203 0.797 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.367 6.912 7.562 10.336 hybrid contribution -0.389 -1.236 0.667 1.457 sum -1.756 5.676 8.229 10.150 Atomic orbital electron populations 1.22094 0.94626 1.01207 1.03327 1.21237 0.95151 0.93657 0.87178 1.22054 1.00733 0.94946 1.03192 1.48385 1.45835 1.31371 1.04909 1.19773 0.89331 0.81461 0.97200 1.21242 0.92568 0.91627 1.48095 0.94991 1.25243 0.95345 1.00487 0.95467 1.70000 1.08284 1.26014 1.51098 0.85965 0.78835 0.81185 0.78000 1.20549 1.20522 1.20793 1.18043 0.81313 0.82370 0.83400 1.90596 1.35858 1.31914 1.86928 1.21543 0.98167 0.94193 0.94633 1.22240 0.98576 1.01031 0.90391 1.21768 0.94130 0.92631 1.01029 1.22477 1.00345 0.97080 0.89792 1.98371 1.83601 1.78214 1.41191 1.23154 0.97881 0.99489 0.86320 1.68767 1.05576 1.05624 1.31227 0.91486 0.89767 0.94774 0.89896 0.93026 0.89371 0.92582 0.97861 0.90759 0.92969 0.81663 0.79671 0.82334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 8.94 71.98 0.64 -4.69 16 2 C 0.13 4.80 3.27 44.99 0.15 4.95 16 3 C -0.15 -4.66 9.24 71.98 0.66 -4.00 16 4 N -0.58 -24.97 2.43 -805.21 -1.95 -26.92 16 5 C 0.24 12.00 4.76 85.63 0.41 12.41 16 6 C -0.50 -26.44 7.95 25.60 0.20 -26.24 16 7 H 0.03 1.79 7.81 -2.91 -0.02 1.77 16 8 C 0.03 1.81 5.46 84.65 0.46 2.27 16 9 N -0.91 -50.33 13.29 21.45 0.28 -50.05 16 10 Si 0.93 43.20 29.54 68.60 2.03 45.22 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 C 0.56 23.71 6.98 86.86 0.61 24.32 16 15 O -0.57 -23.91 12.64 -3.80 -0.05 -23.96 16 16 C 0.05 2.05 6.62 41.90 0.28 2.33 16 17 C -0.10 -3.04 9.63 22.61 0.22 -2.83 16 18 C -0.07 -1.71 9.97 22.47 0.22 -1.49 16 19 C -0.07 -1.90 6.35 22.51 0.14 -1.76 16 20 Cl -0.04 -1.00 28.99 -2.72 -0.08 -1.08 16 21 C 0.09 3.29 10.98 84.86 0.93 4.22 16 22 N -0.40 -16.89 4.98 -184.83 -0.92 -17.81 16 23 H 0.07 2.46 6.02 -2.39 -0.01 2.45 16 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 3.05 7.73 -2.39 -0.02 3.03 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 1.89 6.45 -2.39 -0.02 1.87 16 30 H 0.00 0.18 7.81 -2.39 -0.02 0.16 16 31 H 0.08 3.85 5.25 -2.86 -0.02 3.83 16 32 H 0.26 13.77 8.31 -92.70 -0.77 12.99 16 33 H 0.17 4.35 7.66 -2.91 -0.02 4.33 16 34 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.16 5.72 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -60.57 309.04 5.34 -55.23 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.10 Total: 9.87 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 4.93 Total: 9.50 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -2.59 Total: -94.78 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -60.57 5.34 -55.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729396.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.460 kcal (2) G-P(sol) polarization free energy of solvation -60.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds