Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99989 * 2 1 4 4 H 1.07994 * 119.99975 * 201.64499 * 3 2 1 5 5 C 1.38812 * 119.99988 * 21.63718 * 3 2 1 6 6 N 1.31614 * 119.99874 * 14.20275 * 5 3 2 7 7 Si 1.86803 * 120.00000 * 194.20038 * 5 3 2 8 8 H 1.48504 * 109.46911 * 59.99988 * 7 5 3 9 9 H 1.48497 * 109.46882 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46980 * 300.00197 * 7 5 3 11 11 C 1.46504 * 120.00485 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.46797 * 89.99893 * 11 2 1 13 13 C 1.50704 * 109.47305 * 180.02562 * 12 11 2 14 14 O 1.21290 * 119.99718 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00074 * 179.97438 * 13 12 11 16 16 C 1.39970 * 119.99758 * 185.23929 * 15 13 12 17 17 C 1.38864 * 120.06165 * 212.86483 * 16 15 13 18 18 C 1.38108 * 119.94805 * 180.22984 * 17 16 15 19 19 C 1.38383 * 120.05248 * 359.48067 * 18 17 16 20 20 Cl 1.73605 * 119.94181 * 180.29692 * 19 18 17 21 21 C 1.38383 * 120.11910 * 0.26394 * 19 18 17 22 22 C 1.38115 * 120.05743 * 359.97438 * 21 19 18 23 23 H 1.09002 * 109.47181 * 274.53271 * 1 2 3 24 24 H 1.08996 * 109.47272 * 34.53576 * 1 2 3 25 25 H 1.09003 * 109.47266 * 154.53519 * 1 2 3 26 26 H 0.96999 * 119.99887 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.46631 * 330.00389 * 11 2 1 28 28 H 1.08997 * 109.47423 * 210.00397 * 11 2 1 29 29 H 1.09001 * 109.47417 * 60.00411 * 12 11 2 30 30 H 1.08997 * 109.47545 * 300.00429 * 12 11 2 31 31 H 0.96994 * 119.99912 * 5.24719 * 15 13 12 32 32 H 1.08007 * 120.02227 * 0.02562 * 17 16 15 33 33 H 1.07996 * 119.97417 * 179.74461 * 18 17 16 34 34 H 1.08001 * 119.97478 * 180.02562 * 21 19 18 35 35 H 1.07991 * 120.03014 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1725 1.2189 -0.3450 5 6 1.5289 2.3458 0.4433 6 7 0.4008 2.2720 1.1171 7 14 2.2949 4.0111 0.0835 8 1 2.4012 4.2000 -1.3856 9 1 1.4432 5.0825 0.6596 10 1 3.6489 4.0745 0.6899 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4417 13 6 3.2056 -3.0163 -1.4413 14 8 3.5082 -3.5415 -0.3907 15 7 3.5420 -3.6007 -2.6083 16 6 4.1434 -4.8646 -2.6102 17 6 5.0711 -5.1920 -3.5902 18 6 5.6595 -6.4414 -3.5928 19 6 5.3332 -7.3631 -2.6134 20 17 6.0804 -8.9301 -2.6148 21 6 4.4130 -7.0376 -1.6325 22 6 3.8180 -5.7912 -1.6283 23 1 -0.3634 0.0812 1.0245 24 1 -0.3633 0.8465 -0.5826 25 1 -0.3634 -0.9278 -0.4419 26 1 -0.0332 3.0825 1.4265 27 1 1.6085 -2.0281 0.5147 28 1 3.1499 -1.1381 0.5144 29 1 3.0416 -0.9515 -1.9559 30 1 1.5002 -1.8415 -1.9555 31 1 3.3674 -3.1453 -3.4467 32 1 5.3298 -4.4711 -4.3518 33 1 6.3780 -6.6979 -4.3571 34 1 4.1603 -7.7585 -0.8690 35 1 3.1002 -5.5375 -0.8624 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103472647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = 4.633250 kcal Electronic energy + Delta-G solvation = -18867.400087 eV Core-core repulsion = 15698.976766 eV Total energy + Delta-G solvation = -3168.423321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58981 -38.70075 -36.68321 -35.68926 -34.65261 -32.08490 -31.29043 -30.21452 -28.81234 -25.90385 -24.56706 -23.30573 -22.46189 -20.78465 -19.94994 -18.00428 -17.06164 -16.78603 -16.57676 -15.69799 -14.99210 -14.73694 -14.57796 -13.88089 -13.79402 -13.71423 -13.34813 -13.13411 -12.55551 -12.46896 -12.24603 -11.94882 -11.70642 -11.21836 -11.06104 -10.89137 -10.84185 -10.56969 -10.30972 -10.24994 -9.92128 -9.87583 -9.72032 -9.24624 -8.56370 -8.21167 -6.80146 -5.74581 -3.20550 0.88327 1.07882 1.94947 2.66623 3.00240 3.37591 3.42927 3.43642 3.49649 4.46985 4.53963 4.65091 4.88934 5.02787 5.18410 5.29999 5.38022 5.63877 5.66601 5.68810 5.76970 5.89044 6.04177 6.08931 6.21858 6.25561 6.63096 6.70351 6.71986 6.92466 7.30759 7.35828 7.70560 7.78640 8.16398 8.37577 9.21530 9.84944 10.33286 11.30744 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.045792 B = 0.002752 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.308449 B =10173.034223 C =10457.371593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.602 5.602 3 C -0.260 4.260 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.167 3.833 12 C -0.159 4.159 13 C 0.517 3.483 14 O -0.518 6.518 15 N -0.683 5.683 16 C 0.163 3.837 17 C -0.141 4.141 18 C -0.090 4.090 19 C -0.058 4.058 20 Cl -0.078 7.078 21 C -0.088 4.088 22 C -0.113 4.113 23 H 0.031 0.969 24 H 0.043 0.957 25 H -0.002 1.002 26 H 0.253 0.747 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.413 0.587 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.256 -17.746 -11.583 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.324 5.324 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.038 3.962 12 C -0.202 4.202 13 C 0.307 3.693 14 O -0.392 6.392 15 N -0.329 5.329 16 C 0.068 3.932 17 C -0.162 4.162 18 C -0.109 4.109 19 C -0.086 4.086 20 Cl -0.050 7.050 21 C -0.108 4.108 22 C -0.133 4.133 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.249 0.751 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.338 -18.008 -10.677 22.184 hybrid contribution 0.388 1.078 -0.709 1.348 sum 7.726 -16.930 -11.387 21.817 Atomic orbital electron populations 1.20813 0.82539 0.95454 0.99550 1.43966 1.01940 1.00675 1.85850 1.19155 0.97527 0.85289 1.36959 0.91346 1.25009 0.97883 0.98508 0.98236 1.70073 1.19231 1.27164 1.38661 0.86329 0.78455 0.83748 0.77964 1.21105 1.21614 1.20891 1.20440 0.97081 0.88354 0.90305 1.22602 0.99940 0.91846 1.05809 1.21595 0.78073 0.87158 0.82499 1.90689 1.52382 1.65051 1.31089 1.43966 1.61129 1.17005 1.10751 1.17938 0.93476 0.85488 0.96303 1.20866 0.97084 0.97353 1.00918 1.20793 0.99945 0.92302 0.97895 1.20860 1.00378 0.87949 0.99383 1.98358 1.81593 1.26652 1.98366 1.20958 0.95485 0.96816 0.97512 1.21216 1.01098 0.91378 0.99654 0.95106 0.93841 0.98391 0.93642 0.93772 0.92669 0.88687 0.89228 0.75132 0.84765 0.84759 0.84695 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.98 59.84 0.54 4.44 16 2 N -0.60 -14.96 2.92 -181.13 -0.53 -15.49 16 3 C -0.26 -7.04 9.66 -15.06 -0.15 -7.19 16 4 H 0.07 1.79 7.87 -52.49 -0.41 1.38 16 5 C 0.00 0.06 5.07 -17.43 -0.09 -0.03 16 6 N -0.91 -26.36 10.70 55.49 0.59 -25.77 16 7 Si 0.91 21.57 29.58 -169.99 -5.03 16.54 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.17 3.45 4.94 -4.04 -0.02 3.43 16 12 C -0.16 -2.51 6.03 -27.88 -0.17 -2.68 16 13 C 0.52 7.66 7.58 -10.98 -0.08 7.58 16 14 O -0.52 -9.35 13.62 5.55 0.08 -9.27 16 15 N -0.68 -7.69 5.34 -9.85 -0.05 -7.74 16 16 C 0.16 1.89 6.30 -83.67 -0.53 1.36 16 17 C -0.14 -1.33 9.96 -39.40 -0.39 -1.72 16 18 C -0.09 -0.83 9.82 -39.58 -0.39 -1.22 16 19 C -0.06 -0.60 6.32 -39.47 -0.25 -0.85 16 20 Cl -0.08 -0.74 28.95 -51.86 -1.50 -2.24 16 21 C -0.09 -0.96 9.82 -39.57 -0.39 -1.35 16 22 C -0.11 -1.40 8.66 -39.39 -0.34 -1.74 16 23 H 0.03 0.82 7.40 -51.93 -0.38 0.43 16 24 H 0.04 1.12 7.24 -51.93 -0.38 0.74 16 25 H 0.00 -0.05 8.04 -51.93 -0.42 -0.47 16 26 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 27 H 0.04 0.91 8.03 -51.93 -0.42 0.49 16 28 H 0.05 1.21 8.00 -51.93 -0.42 0.80 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.41 3.32 8.82 -40.82 -0.36 2.96 16 32 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.15 2.01 6.36 -52.49 -0.33 1.68 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -31.35 316.08 -8.30 -39.65 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.37 Total: -0.46 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.26 Total: 0.03 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.01 Total: -49.00 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.35 -8.30 -39.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.279 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds