Wall clock time and date at job start Tue Mar 31 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 120.00186 * 2 1 4 4 H 1.07992 * 120.00528 * 204.89641 * 3 2 1 5 5 C 1.38816 * 119.99656 * 24.89401 * 3 2 1 6 6 N 1.31621 * 120.00321 * 5.59875 * 5 3 2 7 7 Si 1.86796 * 119.99892 * 185.59899 * 5 3 2 8 8 H 1.48503 * 109.47117 * 90.00189 * 7 5 3 9 9 H 1.48506 * 109.47236 * 210.00074 * 7 5 3 10 10 H 1.48497 * 109.47256 * 330.00066 * 7 5 3 11 11 C 1.46501 * 119.99732 * 180.02562 * 2 1 3 12 12 C 1.52989 * 109.47228 * 269.99620 * 11 2 1 13 13 C 1.50693 * 109.47578 * 180.02562 * 12 11 2 14 14 O 1.21296 * 119.99995 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00410 * 180.02562 * 13 12 11 16 16 C 1.39929 * 119.99996 * 175.66663 * 15 13 12 17 17 C 1.38898 * 120.06640 * 214.87886 * 16 15 13 18 18 C 1.38100 * 119.95607 * 179.72315 * 17 16 15 19 19 C 1.38277 * 120.08016 * 0.58151 * 18 17 16 20 20 C 1.38380 * 120.13292 * 359.69950 * 19 18 17 21 21 Cl 1.73592 * 119.97899 * 180.02562 * 20 19 18 22 22 C 1.38248 * 120.03884 * 359.97438 * 20 19 18 23 23 H 1.09001 * 109.47522 * 275.01323 * 1 2 3 24 24 H 1.08999 * 109.47259 * 35.01315 * 1 2 3 25 25 H 1.09003 * 109.47443 * 155.01303 * 1 2 3 26 26 H 0.96997 * 120.00238 * 180.02562 * 6 5 3 27 27 H 1.09007 * 109.46677 * 149.99567 * 11 2 1 28 28 H 1.09000 * 109.47107 * 30.00441 * 11 2 1 29 29 H 1.09000 * 109.47746 * 300.00429 * 12 11 2 30 30 H 1.09007 * 109.47335 * 60.00350 * 12 11 2 31 31 H 0.96996 * 120.00254 * 355.66787 * 15 13 12 32 32 H 1.08003 * 120.01846 * 0.02562 * 17 16 15 33 33 H 1.07995 * 119.95780 * 180.27749 * 18 17 16 34 34 H 1.08007 * 119.93409 * 179.71921 * 19 18 17 35 35 H 1.08001 * 120.03913 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1544 1.2294 -0.3937 5 6 1.5523 2.3322 0.5061 6 7 0.3728 2.2587 1.0856 7 14 2.4224 3.9791 0.3646 8 1 2.0322 4.6373 -0.9081 9 1 2.0348 4.8436 1.5081 10 1 3.8918 3.7656 0.3812 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4416 13 6 3.2064 -3.0158 1.4411 14 8 3.5104 -3.5402 0.3905 15 7 3.5431 -3.6001 2.6081 16 6 4.1624 -4.8549 2.6092 17 6 3.8868 -5.7661 3.6207 18 6 4.4950 -7.0059 3.6164 19 6 5.3870 -7.3369 2.6130 20 6 5.6686 -6.4297 1.6068 21 17 6.7886 -6.8496 0.3487 22 6 5.0576 -5.1895 1.6022 23 1 -0.3634 0.0898 1.0237 24 1 -0.3634 0.8417 -0.5896 25 1 -0.3634 -0.9315 -0.4341 26 1 -0.0447 3.0597 1.4389 27 1 3.1499 -1.1382 -0.5145 28 1 1.6083 -2.0281 -0.5148 29 1 3.0416 -0.9517 1.9559 30 1 1.5001 -1.8416 1.9555 31 1 3.3560 -3.1509 3.4472 32 1 3.1936 -5.5068 4.4073 33 1 4.2773 -7.7161 4.4004 34 1 5.8647 -8.3056 2.6145 35 1 5.2771 -4.4816 0.8167 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103472669.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:54 Heat of formation + Delta-G solvation = 4.982759 kcal Electronic energy + Delta-G solvation = -19046.458329 eV Core-core repulsion = 15878.050164 eV Total energy + Delta-G solvation = -3168.408165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.52244 -38.62286 -36.61334 -35.68126 -34.64408 -32.04115 -30.92365 -30.29441 -28.91770 -25.90266 -24.55749 -23.11830 -22.43712 -20.78368 -19.90067 -18.00723 -17.04696 -16.58146 -16.37351 -15.60133 -14.94614 -14.87553 -14.69933 -13.95747 -13.78820 -13.65901 -13.38277 -12.93525 -12.40031 -12.20140 -12.16299 -11.84637 -11.62961 -11.22112 -11.09345 -10.88660 -10.83056 -10.53956 -10.35701 -10.15547 -9.98499 -9.82808 -9.59618 -8.93662 -8.57722 -8.30571 -6.78838 -5.75497 -3.24714 0.94300 1.11050 1.98947 2.75260 3.08876 3.36513 3.42841 3.43941 3.52361 4.46834 4.63088 4.87447 4.91719 4.98346 5.23549 5.26345 5.39462 5.60444 5.73291 5.78589 5.94749 6.03670 6.11345 6.14483 6.23608 6.35937 6.67954 6.75943 6.78374 6.93832 7.37386 7.41898 7.73106 7.79877 8.24269 8.39429 9.22217 9.83893 10.33740 11.28743 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028204 B = 0.003252 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.539927 B = 8607.091586 C = 8949.657155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.602 5.602 3 C -0.257 4.257 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.910 5.910 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.169 3.831 12 C -0.157 4.157 13 C 0.517 3.483 14 O -0.522 6.522 15 N -0.682 5.682 16 C 0.167 3.833 17 C -0.147 4.147 18 C -0.090 4.090 19 C -0.135 4.135 20 C -0.016 4.016 21 Cl -0.070 7.070 22 C -0.117 4.117 23 H 0.029 0.971 24 H 0.045 0.955 25 H -0.004 1.004 26 H 0.252 0.748 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.414 0.586 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 -17.632 7.065 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.324 5.324 3 C -0.386 4.386 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.555 5.555 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.040 3.960 12 C -0.200 4.200 13 C 0.306 3.694 14 O -0.397 6.397 15 N -0.328 5.328 16 C 0.072 3.928 17 C -0.168 4.168 18 C -0.108 4.108 19 C -0.155 4.155 20 C -0.043 4.043 21 Cl -0.041 7.041 22 C -0.138 4.138 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.015 0.985 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.250 0.750 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.802 -17.791 6.198 20.391 hybrid contribution 0.353 1.132 0.528 1.298 sum 8.155 -16.659 6.726 19.730 Atomic orbital electron populations 1.20855 0.82419 0.95568 0.99395 1.44019 1.02045 1.00700 1.85655 1.19268 0.99399 0.86064 1.33907 0.91326 1.25124 0.97323 0.98742 0.98270 1.70051 1.15988 1.27601 1.41846 0.86234 0.79133 0.83838 0.77217 1.21419 1.21668 1.20437 1.20609 0.96681 0.87972 0.90727 1.22653 1.00056 0.91444 1.05883 1.21778 0.78084 0.87069 0.82446 1.90666 1.53262 1.64548 1.31183 1.43952 1.60144 1.17827 1.10902 1.17701 0.92812 0.86560 0.95739 1.21052 1.02127 0.93459 1.00176 1.20856 0.95927 0.96007 0.98050 1.20991 1.00431 0.99611 0.94435 1.20753 0.95876 0.95523 0.92127 1.98370 1.60618 1.93296 1.51847 1.21238 0.95382 0.96581 1.00589 0.95238 0.93587 0.98534 0.93721 0.93005 0.93663 0.88420 0.89255 0.74991 0.85073 0.84838 0.85090 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 8.99 59.85 0.54 4.51 16 2 N -0.60 -15.07 2.92 -181.12 -0.53 -15.60 16 3 C -0.26 -6.97 9.67 -15.06 -0.15 -7.11 16 4 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 5 C 0.00 0.10 5.24 -17.43 -0.09 0.01 16 6 N -0.91 -25.85 10.45 55.49 0.58 -25.27 16 7 Si 0.91 21.51 29.56 -169.99 -5.02 16.48 16 8 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 C 0.17 3.54 5.00 -4.05 -0.02 3.52 16 12 C -0.16 -2.72 6.02 -27.89 -0.17 -2.89 16 13 C 0.52 8.21 7.67 -10.99 -0.08 8.12 16 14 O -0.52 -9.82 13.43 5.54 0.07 -9.75 16 15 N -0.68 -8.44 5.34 -9.87 -0.05 -8.50 16 16 C 0.17 2.09 6.30 -83.70 -0.53 1.56 16 17 C -0.15 -1.43 9.97 -39.39 -0.39 -1.83 16 18 C -0.09 -0.78 10.04 -39.62 -0.40 -1.18 16 19 C -0.14 -1.33 9.83 -39.51 -0.39 -1.72 16 20 C -0.02 -0.19 6.32 -39.53 -0.25 -0.44 16 21 Cl -0.07 -0.82 28.95 -51.86 -1.50 -2.32 16 22 C -0.12 -1.62 8.48 -39.36 -0.33 -1.95 16 23 H 0.03 0.76 7.35 -51.93 -0.38 0.38 16 24 H 0.05 1.22 7.26 -51.93 -0.38 0.84 16 25 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 26 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.05 1.12 7.99 -51.93 -0.42 0.70 16 28 H 0.04 0.93 7.82 -51.93 -0.41 0.52 16 29 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.41 3.86 8.82 -40.82 -0.36 3.50 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.15 2.41 6.24 -52.49 -0.33 2.08 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -30.91 315.39 -8.29 -39.20 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.33 Total: 0.39 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.26 Total: 0.61 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.00 Total: -49.37 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.91 -8.29 -39.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472669.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.187 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds