Wall clock time and date at job start Tue Mar 31 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47231 * 2 1 4 4 C 1.50700 * 109.47299 * 120.00053 * 2 1 3 5 5 O 1.21283 * 120.00290 * 120.00090 * 4 2 1 6 6 N 1.34784 * 119.99714 * 300.00222 * 4 2 1 7 7 C 1.39973 * 119.99744 * 184.81724 * 6 4 2 8 8 C 1.38850 * 120.07720 * 332.14903 * 7 6 4 9 9 C 1.38118 * 119.94361 * 180.02562 * 8 7 6 10 10 C 1.38299 * 120.09140 * 359.97438 * 9 8 7 11 11 C 1.38257 * 120.15208 * 0.02562 * 10 9 8 12 12 C 1.38235 * 120.05559 * 0.02562 * 11 10 9 13 13 Cl 1.73603 * 120.04575 * 180.02562 * 12 11 10 14 14 N 1.46508 * 109.47279 * 239.99819 * 2 1 3 15 15 C 1.46495 * 119.99965 * 300.00031 * 14 2 1 16 16 C 1.36929 * 119.99810 * 120.00017 * 14 2 1 17 17 H 1.08007 * 120.00470 * 19.26505 * 16 14 2 18 18 C 1.38817 * 120.00253 * 199.26688 * 16 14 2 19 19 N 1.31625 * 119.99215 * 19.75381 * 18 16 14 20 20 Si 1.86798 * 120.00294 * 199.75943 * 18 16 14 21 21 H 1.48497 * 109.47079 * 94.98982 * 20 18 16 22 22 H 1.48502 * 109.46859 * 214.98340 * 20 18 16 23 23 H 1.48495 * 109.47124 * 334.98682 * 20 18 16 24 24 H 1.09004 * 109.46859 * 60.00421 * 1 2 3 25 25 H 1.08999 * 109.46553 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46929 * 300.00198 * 1 2 3 27 27 H 0.96997 * 120.00115 * 4.80969 * 6 4 2 28 28 H 1.07999 * 120.02678 * 0.02562 * 8 7 6 29 29 H 1.07995 * 119.95485 * 179.97438 * 9 8 7 30 30 H 1.07997 * 119.92384 * 179.73971 * 10 9 8 31 31 H 1.07999 * 119.97694 * 179.97438 * 11 10 9 32 32 H 1.09000 * 109.46864 * 95.75963 * 15 14 2 33 33 H 1.08992 * 109.47068 * 215.76147 * 15 14 2 34 34 H 1.09002 * 109.47091 * 335.75795 * 15 14 2 35 35 H 0.97001 * 119.99047 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.2542 -0.8478 3.5957 8 6 2.6307 -2.1840 3.5685 9 6 3.1702 -2.7713 4.6962 10 6 3.3363 -2.0302 5.8520 11 6 2.9627 -0.6994 5.8833 12 6 2.4212 -0.1057 4.7586 13 17 1.9529 1.5655 4.7980 14 7 2.0184 -0.6907 -1.1962 15 6 1.6645 -2.0932 -1.4280 16 6 2.8057 -0.0252 -2.0975 17 1 3.3213 0.8766 -1.8018 18 6 2.9410 -0.5095 -3.3914 19 7 2.0496 -1.3474 -3.8769 20 14 4.3882 0.0278 -4.4432 21 1 5.4791 -0.9736 -4.3330 22 1 3.9570 0.1360 -5.8602 23 1 4.8788 1.3481 -3.9729 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.0931 0.4958 2.5448 28 1 2.5018 -2.7636 2.6664 29 1 3.4627 -3.8107 4.6754 30 1 3.7545 -2.4933 6.7335 31 1 3.0933 -0.1235 6.7875 32 1 0.7960 -2.1450 -2.0846 33 1 2.5044 -2.6074 -1.8951 34 1 1.4299 -2.5707 -0.4766 35 1 2.1444 -1.6861 -4.7809 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120738019.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:40 Heat of formation + Delta-G solvation = 16.063368 kcal Electronic energy + Delta-G solvation = -19906.915741 eV Core-core repulsion = 16738.988067 eV Total energy + Delta-G solvation = -3167.927674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40814 -38.50413 -36.51594 -35.60270 -34.49797 -32.20268 -30.73778 -29.90503 -28.65846 -25.99333 -24.38545 -23.23337 -22.65188 -21.30045 -19.40387 -17.88282 -17.01498 -16.46903 -16.34681 -15.30728 -14.94137 -14.48960 -14.37349 -13.89229 -13.76605 -13.61402 -13.23969 -12.76570 -12.44428 -12.16178 -11.77205 -11.63327 -11.53607 -11.37440 -11.03428 -10.92932 -10.81657 -10.70362 -10.46099 -10.26473 -9.99869 -9.87456 -9.16995 -8.81892 -8.52479 -8.02432 -6.86634 -5.77157 -3.18673 1.09963 1.28288 2.04155 3.05151 3.23439 3.40624 3.46938 3.47530 3.72148 4.47843 4.73665 4.91339 5.09939 5.22048 5.31304 5.39439 5.43280 5.49829 5.79637 5.87171 5.90233 6.13442 6.16139 6.17393 6.41528 6.44793 6.54249 6.75665 6.88030 6.97744 7.44765 7.60857 7.71229 7.80236 8.29649 8.57133 9.17173 9.79832 10.26561 11.27763 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.004441 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.254337 B = 6303.946056 C = 6571.219776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.161 3.839 3 H 0.094 0.906 4 C 0.493 3.507 5 O -0.500 6.500 6 N -0.679 5.679 7 C 0.174 3.826 8 C -0.126 4.126 9 C -0.094 4.094 10 C -0.139 4.139 11 C -0.092 4.092 12 C -0.078 4.078 13 Cl -0.073 7.073 14 N -0.569 5.569 15 C 0.166 3.834 16 C -0.264 4.264 17 H 0.070 0.930 18 C 0.008 3.992 19 N -0.897 5.897 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.409 0.591 28 H 0.160 0.840 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.029 0.971 33 H 0.039 0.961 34 H 0.008 0.992 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 1.682 18.693 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.112 0.888 4 C 0.280 3.720 5 O -0.372 6.372 6 N -0.325 5.325 7 C 0.076 3.924 8 C -0.146 4.146 9 C -0.113 4.113 10 C -0.159 4.159 11 C -0.111 4.111 12 C -0.108 4.108 13 Cl -0.044 7.044 14 N -0.289 5.289 15 C 0.022 3.978 16 C -0.393 4.393 17 H 0.088 0.912 18 C -0.191 4.191 19 N -0.541 5.541 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.204 1.204 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.246 0.754 28 H 0.178 0.822 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.027 0.973 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.887 1.048 18.241 18.368 hybrid contribution 0.510 0.777 -0.448 1.032 sum -1.377 1.824 17.793 17.939 Atomic orbital electron populations 1.22276 0.95919 1.02070 1.01374 1.20248 0.93640 0.96172 0.85263 0.88836 1.23331 0.79279 0.85150 0.84285 1.90566 1.35889 1.25010 1.85785 1.44226 1.47262 1.36522 1.04502 1.17764 0.96863 0.91802 0.85984 1.21708 0.99868 0.92652 1.00389 1.21216 0.97565 1.00210 0.92304 1.21022 1.02493 0.93636 0.98727 1.20805 0.98312 0.95349 0.96669 1.20724 1.08183 0.85642 0.96244 1.98349 1.91023 1.16426 1.98598 1.43694 1.57804 1.08535 1.18828 1.20755 0.99464 0.82740 0.94824 1.19203 1.20626 1.08996 0.90445 0.91203 1.24863 0.98282 0.99701 0.96259 1.70144 1.32830 1.35478 1.15659 0.86257 0.82703 0.78258 0.79445 1.21439 1.21778 1.20385 0.90948 0.92668 0.93750 0.75443 0.82238 0.85325 0.85441 0.85047 0.95267 0.94185 0.97302 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.09 37.16 0.34 -2.27 16 2 C 0.16 3.19 3.13 -69.08 -0.22 2.97 16 3 H 0.09 1.77 7.84 -51.93 -0.41 1.36 16 4 C 0.49 9.30 6.73 -10.98 -0.07 9.23 16 5 O -0.50 -11.07 11.63 5.55 0.06 -11.00 16 6 N -0.68 -10.26 5.08 -9.83 -0.05 -10.31 16 7 C 0.17 2.57 6.42 -83.65 -0.54 2.03 16 8 C -0.13 -1.88 8.77 -39.40 -0.35 -2.23 16 9 C -0.09 -1.13 10.04 -39.60 -0.40 -1.52 16 10 C -0.14 -1.45 10.04 -39.55 -0.40 -1.84 16 11 C -0.09 -1.00 9.82 -39.58 -0.39 -1.39 16 12 C -0.08 -1.00 6.34 -39.32 -0.25 -1.25 16 13 Cl -0.07 -0.83 27.83 -51.86 -1.44 -2.28 16 14 N -0.57 -14.31 2.59 -174.81 -0.45 -14.77 16 15 C 0.17 4.25 7.48 59.84 0.45 4.70 16 16 C -0.26 -7.26 9.59 -15.06 -0.14 -7.41 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C 0.01 0.23 4.96 -17.43 -0.09 0.14 16 19 N -0.90 -26.13 10.89 55.49 0.60 -25.53 16 20 Si 0.90 22.02 29.60 -169.99 -5.03 16.99 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16 26 H 0.04 0.56 7.46 -51.93 -0.39 0.18 16 27 H 0.41 5.19 7.14 -40.82 -0.29 4.90 16 28 H 0.16 2.74 5.66 -52.49 -0.30 2.45 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.03 0.78 7.38 -51.93 -0.38 0.40 16 33 H 0.04 1.12 7.31 -51.93 -0.38 0.74 16 34 H 0.01 0.20 6.45 -51.93 -0.34 -0.13 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 306.75 15.07 4.62 4.62 Total: -1.00 -31.23 306.75 -7.85 -39.08 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.12 Total: 2.03 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.05 Total: 1.15 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.10 Total: -50.60 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.06 Total: -11.00 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.44 Total: -2.28 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.23 -7.85 -39.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120738019.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.143 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds