Wall clock time and date at job start Tue Mar 31 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36932 * 119.99825 * 2 1 4 4 H 1.08008 * 119.99564 * 202.35534 * 3 2 1 5 5 C 1.38803 * 120.00408 * 22.35400 * 3 2 1 6 6 N 1.31628 * 119.99890 * 11.44002 * 5 3 2 7 7 Si 1.86802 * 120.00418 * 191.43581 * 5 3 2 8 8 H 1.48500 * 109.46627 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47143 * 119.99981 * 7 5 3 10 10 H 1.48495 * 109.47164 * 240.00314 * 7 5 3 11 11 C 1.46499 * 119.99644 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.47325 * 269.99514 * 11 2 1 13 13 O 1.21277 * 119.99803 * 0.02562 * 12 11 2 14 14 N 1.34778 * 120.00371 * 180.02562 * 12 11 2 15 15 C 1.46495 * 120.00053 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46931 * 179.97438 * 15 14 12 17 17 C 1.38239 * 119.99127 * 269.72549 * 16 15 14 18 18 C 1.38213 * 120.01581 * 179.72662 * 17 16 15 19 19 C 1.38351 * 119.98610 * 0.54697 * 18 17 16 20 20 Cl 1.73597 * 120.01459 * 179.70256 * 19 18 17 21 21 C 1.38355 * 119.97149 * 359.73345 * 19 18 17 22 22 C 1.38217 * 119.98732 * 359.97438 * 21 19 18 23 23 H 1.09006 * 109.47311 * 274.11888 * 1 2 3 24 24 H 1.09001 * 109.47606 * 34.11977 * 1 2 3 25 25 H 1.09002 * 109.47739 * 154.12034 * 1 2 3 26 26 H 0.96992 * 120.00094 * 180.02562 * 6 5 3 27 27 H 1.09005 * 109.46887 * 149.99568 * 11 2 1 28 28 H 1.09000 * 109.47828 * 30.00108 * 11 2 1 29 29 H 0.97003 * 119.99319 * 359.97438 * 14 12 11 30 30 H 1.09001 * 109.46767 * 60.00296 * 15 14 12 31 31 H 1.08996 * 109.47611 * 300.00313 * 15 14 12 32 32 H 1.08006 * 119.98839 * 0.02562 * 17 16 15 33 33 H 1.07998 * 120.00683 * 180.27559 * 18 17 16 34 34 H 1.08003 * 120.00631 * 179.97438 * 21 19 18 35 35 H 1.08003 * 119.98959 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2210 -0.3558 5 6 1.5339 2.3428 0.4572 6 7 0.3851 2.2688 1.0955 7 14 2.3354 4.0049 0.1666 8 1 3.6116 3.8171 -0.5691 9 1 1.4240 4.8607 -0.6346 10 1 2.6077 4.6582 1.4721 11 6 2.1974 -1.2688 -0.0006 12 6 2.4487 -1.7044 1.4200 13 8 2.0543 -1.0225 2.3421 14 7 3.1116 -2.8519 1.6658 15 6 3.3563 -3.2750 3.0468 16 6 4.1097 -4.5802 3.0462 17 6 3.4181 -5.7772 3.0520 18 6 4.1085 -6.9746 3.0458 19 6 5.4920 -6.9751 3.0451 20 17 6.3598 -8.4786 3.0450 21 6 6.1836 -5.7768 3.0451 22 6 5.4921 -4.5800 3.0453 23 1 -0.3634 0.0738 1.0251 24 1 -0.3634 0.8508 -0.5764 25 1 -0.3635 -0.9246 -0.4485 26 1 -0.0453 3.0772 1.4147 27 1 3.1498 -1.1382 -0.5144 28 1 1.6084 -2.0282 -0.5147 29 1 3.4267 -3.3974 0.9282 30 1 2.4041 -3.4058 3.5608 31 1 3.9453 -2.5154 3.5607 32 1 2.3381 -5.7767 3.0566 33 1 3.5680 -7.9096 3.0458 34 1 7.2636 -5.7765 3.0450 35 1 6.0319 -3.6446 3.0457 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120762522.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:10 Heat of formation + Delta-G solvation = 9.097616 kcal Electronic energy + Delta-G solvation = -18950.142376 eV Core-core repulsion = 15781.912644 eV Total energy + Delta-G solvation = -3168.229732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.82742 -38.57956 -36.81888 -35.21474 -34.21633 -31.45678 -31.36588 -30.94365 -27.58067 -25.85563 -25.29472 -23.12655 -21.89115 -21.23334 -19.68030 -17.50824 -16.75440 -16.43846 -15.93348 -15.58976 -15.14118 -14.58729 -14.43939 -13.81744 -13.77505 -13.58166 -13.38105 -13.07260 -12.86007 -12.33078 -11.80805 -11.71445 -11.63302 -11.50441 -11.12877 -11.08287 -10.83222 -10.62364 -10.33217 -9.96218 -9.86273 -9.34233 -9.22676 -8.79764 -8.53890 -8.44647 -6.73065 -5.66394 -3.12861 0.77532 0.99759 1.82345 3.22690 3.41537 3.47568 3.50248 3.60219 3.96224 4.48223 4.53990 4.55161 4.59855 5.02588 5.04749 5.34931 5.49033 5.50877 5.60870 5.71279 5.72024 5.91738 5.92156 6.05727 6.17397 6.31195 6.33709 6.49098 6.76327 6.94198 7.41946 7.79045 7.88234 8.11801 8.42927 9.13380 9.26855 9.87950 10.35268 11.38316 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.039897 B = 0.002899 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.643429 B = 9656.744048 C = 9935.574893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.573 5.573 3 C -0.258 4.258 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.896 5.896 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.133 3.867 12 C 0.469 3.531 13 O -0.508 6.508 14 N -0.747 5.747 15 C 0.157 3.843 16 C -0.091 4.091 17 C -0.091 4.091 18 C -0.112 4.112 19 C -0.034 4.034 20 Cl -0.076 7.076 21 C -0.112 4.112 22 C -0.090 4.090 23 H 0.033 0.967 24 H 0.049 0.951 25 H -0.004 1.004 26 H 0.251 0.749 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.392 0.608 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.408 -20.302 2.129 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.292 5.292 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.540 5.540 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.000 4.000 12 C 0.253 3.747 13 O -0.379 6.379 14 N -0.404 5.404 15 C 0.033 3.967 16 C -0.091 4.091 17 C -0.110 4.110 18 C -0.131 4.131 19 C -0.061 4.061 20 Cl -0.047 7.047 21 C -0.131 4.131 22 C -0.109 4.109 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.015 0.985 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.225 0.775 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.004 -19.680 2.859 21.830 hybrid contribution 0.726 0.384 -0.084 0.826 sum 9.729 -19.296 2.775 21.787 Atomic orbital electron populations 1.20864 0.81912 0.95554 0.99794 1.43889 1.02140 0.99816 1.83389 1.19196 0.98300 0.84880 1.36395 0.91234 1.25096 0.97689 0.98657 0.97737 1.70111 1.17688 1.26846 1.39314 0.86171 0.78657 0.84209 0.77378 1.20288 1.21575 1.21699 1.21027 0.97983 0.90328 0.90651 1.23765 0.76463 0.78939 0.95553 1.90708 1.48537 1.52357 1.46292 1.46700 1.61413 1.25884 1.06432 1.20087 0.99000 0.91320 0.86275 1.20182 0.93934 0.95363 0.99664 1.21122 1.00513 0.90983 0.98332 1.21059 0.91975 0.99198 1.00884 1.20976 0.92604 0.87107 1.05428 1.98371 1.76835 1.32508 1.96957 1.21069 1.00548 0.90648 1.00818 1.21140 0.93632 0.97934 0.98194 0.94812 0.93247 0.98538 0.93818 0.90899 0.91509 0.77507 0.91172 0.91102 0.84759 0.84885 0.84870 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 9.01 59.85 0.54 4.71 16 2 N -0.57 -14.81 2.41 -182.50 -0.44 -15.25 16 3 C -0.26 -7.29 9.67 -15.06 -0.15 -7.44 16 4 H 0.07 1.90 7.85 -52.48 -0.41 1.49 16 5 C 0.01 0.22 5.13 -17.43 -0.09 0.13 16 6 N -0.90 -27.27 10.59 55.49 0.59 -26.68 16 7 Si 0.91 22.40 29.57 -169.99 -5.03 17.37 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 C 0.13 2.67 6.19 -5.20 -0.03 2.63 16 12 C 0.47 9.53 7.90 -10.99 -0.09 9.44 16 13 O -0.51 -13.29 16.43 5.56 0.09 -13.20 16 14 N -0.75 -10.93 5.55 -61.48 -0.34 -11.28 16 15 C 0.16 2.09 5.80 -5.19 -0.03 2.06 16 16 C -0.09 -0.94 5.25 -104.62 -0.55 -1.49 16 17 C -0.09 -0.85 9.70 -39.59 -0.38 -1.23 16 18 C -0.11 -0.98 9.83 -39.55 -0.39 -1.37 16 19 C -0.03 -0.32 6.32 -39.50 -0.25 -0.56 16 20 Cl -0.08 -0.65 28.96 -51.86 -1.50 -2.16 16 21 C -0.11 -1.00 9.83 -39.55 -0.39 -1.39 16 22 C -0.09 -0.86 9.70 -39.59 -0.38 -1.24 16 23 H 0.03 0.97 7.42 -51.93 -0.39 0.58 16 24 H 0.05 1.33 7.18 -51.93 -0.37 0.95 16 25 H 0.00 -0.09 7.85 -51.93 -0.41 -0.49 16 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 28 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 29 H 0.39 4.56 8.46 -40.82 -0.35 4.22 16 30 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 32 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -34.39 320.52 -8.40 -42.80 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.41 Total: -0.69 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -2.19 Total: 4.26 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.19 Total: -53.21 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.39 -8.40 -42.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120762522.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.895 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds