Wall clock time and date at job start Tue Mar 31 2020 05:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47083 * 2 1 4 4 H 1.08994 * 109.47198 * 304.89742 * 3 2 1 5 5 C 1.50703 * 109.46781 * 184.89993 * 3 2 1 6 6 H 1.08001 * 119.99991 * 245.45001 * 5 3 2 7 7 C 1.37877 * 119.99806 * 65.45372 * 5 3 2 8 8 N 1.31507 * 120.00311 * 9.46869 * 7 5 3 9 9 Si 1.86801 * 119.99696 * 189.46675 * 7 5 3 10 10 H 1.48506 * 109.47088 * 84.99590 * 9 7 5 11 11 H 1.48501 * 109.47229 * 204.99070 * 9 7 5 12 12 H 1.48493 * 109.47490 * 324.99524 * 9 7 5 13 13 N 1.46494 * 109.47045 * 64.90193 * 3 2 1 14 14 C 1.34778 * 119.99879 * 274.99554 * 13 3 2 15 15 O 1.21505 * 120.00138 * 0.02562 * 14 13 3 16 16 C 1.48154 * 120.00021 * 180.02562 * 14 13 3 17 17 C 1.39867 * 120.91583 * 180.02562 * 16 14 13 18 18 C 1.38087 * 119.03147 * 179.97438 * 17 16 14 19 19 C 1.50708 * 119.53793 * 180.02562 * 18 17 16 20 20 N 1.31846 * 120.92469 * 0.02562 * 18 17 16 21 21 C 1.31893 * 122.02381 * 359.97438 * 20 18 17 22 22 Cl 1.73608 * 119.56619 * 180.02562 * 21 20 18 23 23 C 1.38342 * 120.86187 * 359.73760 * 21 20 18 24 24 H 1.09001 * 109.47454 * 300.00314 * 1 2 3 25 25 H 1.09003 * 109.47159 * 60.00074 * 1 2 3 26 26 H 1.08999 * 109.47464 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46976 * 239.99453 * 2 1 3 28 28 H 1.09003 * 109.47159 * 119.99926 * 2 1 3 29 29 H 0.97006 * 120.00367 * 180.02562 * 8 7 5 30 30 H 0.97002 * 120.00094 * 95.00061 * 13 3 2 31 31 H 1.07995 * 120.48479 * 359.95080 * 17 16 14 32 32 H 1.09000 * 109.46728 * 89.99883 * 19 18 17 33 33 H 1.09001 * 109.46996 * 210.00101 * 19 18 17 34 34 H 1.09001 * 109.46822 * 329.99975 * 19 18 17 35 35 H 1.08001 * 120.50788 * 180.26267 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 -0.8428 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6939 7 6 4.1411 0.9800 -1.2732 8 7 3.4097 0.7114 -2.3325 9 14 5.9919 0.7327 -1.3289 10 1 6.3289 -0.6069 -0.7835 11 1 6.4618 0.8272 -2.7344 12 1 6.6562 1.7807 -0.5132 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6652 1.3636 15 8 -0.3417 2.6322 0.4280 16 6 0.0391 3.3288 2.6283 17 6 -1.2196 3.9228 2.7665 18 6 -1.5463 4.5302 3.9628 19 6 -2.8996 5.1733 4.1243 20 7 -0.6908 4.5554 4.9657 21 6 0.5059 4.0078 4.8781 22 17 1.5816 4.0777 6.2389 23 6 0.9128 3.3733 3.7181 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8311 0.3845 -3.1428 30 1 2.2687 2.1243 1.9977 31 1 -1.9256 3.9070 1.9494 32 1 -3.6068 4.4393 4.5106 33 1 -2.8245 6.0076 4.8218 34 1 -3.2463 5.5381 3.1574 35 1 1.8924 2.9231 3.6541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125792586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:20 Heat of formation + Delta-G solvation = -21.596044 kcal Electronic energy + Delta-G solvation = -19579.488241 eV Core-core repulsion = 16409.927532 eV Total energy + Delta-G solvation = -3169.560709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.67242 -38.86439 -36.80536 -35.22777 -33.53808 -32.36961 -32.25965 -30.93243 -27.84356 -27.20353 -24.53754 -23.01557 -22.86826 -20.48162 -19.55299 -18.09706 -16.90489 -16.30917 -15.79761 -15.40928 -15.18889 -15.09393 -14.47422 -14.26822 -13.82188 -13.22201 -13.12613 -12.78144 -12.53271 -12.28041 -12.02878 -11.63282 -11.50070 -11.44181 -11.42407 -11.08290 -10.85540 -10.45749 -10.30682 -10.04797 -9.93324 -9.75675 -9.27715 -9.20641 -9.00124 -8.56029 -8.03308 -6.21806 -4.27914 0.64278 0.75641 1.63168 3.06474 3.21490 3.28695 3.29553 3.69644 3.83079 4.09973 4.30007 4.65864 4.75402 4.91828 5.05943 5.11758 5.21095 5.38659 5.42642 5.67724 5.77821 5.97335 6.26015 6.28340 6.29799 6.49525 6.89525 7.05399 7.17440 7.25286 7.48183 7.52219 7.60991 7.72191 7.96722 8.45826 8.66225 8.89355 9.37942 10.86337 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.004617 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.913220 B = 6063.137050 C = 7104.972383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.268 3.732 4 H 0.060 0.940 5 C -0.541 4.541 6 H 0.062 0.938 7 C 0.071 3.929 8 N -0.878 5.878 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.693 5.693 14 C 0.542 3.458 15 O -0.531 6.531 16 C -0.058 4.058 17 C -0.117 4.117 18 C 0.139 3.861 19 C -0.102 4.102 20 N -0.473 5.473 21 C 0.176 3.824 22 Cl -0.031 7.031 23 C -0.134 4.134 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.266 0.734 30 H 0.389 0.611 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 5.498 12.868 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.166 3.834 4 H 0.078 0.922 5 C -0.579 4.579 6 H 0.080 0.920 7 C -0.133 4.133 8 N -0.515 5.515 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.341 5.341 14 C 0.325 3.675 15 O -0.410 6.410 16 C -0.069 4.069 17 C -0.138 4.138 18 C 0.002 3.998 19 C -0.160 4.160 20 N -0.185 5.185 21 C 0.012 3.988 22 Cl -0.002 7.002 23 C -0.155 4.155 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.223 0.777 31 H 0.173 0.827 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.975 5.786 12.833 16.180 hybrid contribution 1.792 -0.615 -0.254 1.912 sum -6.183 5.171 12.579 14.940 Atomic orbital electron populations 1.21857 0.98008 0.98404 1.01436 1.21868 0.92993 0.99640 1.01450 1.18914 0.94685 0.89018 0.80744 0.92237 1.21139 0.90295 1.44482 1.01995 0.91978 1.24868 0.98571 0.94972 0.94891 1.69973 1.35873 1.43447 1.02167 0.86517 0.84815 0.78791 0.77344 1.20349 1.21118 1.19848 1.46502 1.13973 1.54743 1.18881 1.17938 0.83479 0.79864 0.86176 1.90765 1.51491 1.59628 1.39090 1.20817 0.94294 0.97042 0.94740 1.22227 0.96516 0.96146 0.98879 1.21152 0.95558 0.95066 0.88049 1.20753 0.90514 1.00964 1.03721 1.66660 1.02024 1.17778 1.32087 1.21431 0.90779 0.97560 0.89063 1.98408 1.60674 1.97004 1.44123 1.22072 1.01686 1.00095 0.91672 0.94203 0.92827 0.95548 0.89964 0.94526 0.92437 0.77735 0.82725 0.89949 0.90147 0.90003 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.12 -2.77 5.50 -26.73 -0.15 -2.91 16 3 C 0.27 6.42 2.11 -69.08 -0.15 6.28 16 4 H 0.06 1.67 7.52 -51.93 -0.39 1.28 16 5 C -0.54 -13.75 8.66 -34.44 -0.30 -14.04 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.77 16 8 N -0.88 -24.10 12.16 55.43 0.67 -23.42 16 9 Si 0.90 20.07 29.55 -169.99 -5.02 15.05 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.69 -13.67 4.98 -55.79 -0.28 -13.95 16 14 C 0.54 10.29 6.36 -12.19 -0.08 10.21 16 15 O -0.53 -11.64 13.58 5.36 0.07 -11.56 16 16 C -0.06 -0.88 5.91 -104.65 -0.62 -1.50 16 17 C -0.12 -1.58 9.31 -39.03 -0.36 -1.94 16 18 C 0.14 1.70 6.78 -82.64 -0.56 1.14 16 19 C -0.10 -0.85 10.16 36.01 0.37 -0.49 16 20 N -0.47 -6.41 10.22 -6.66 -0.07 -6.48 16 21 C 0.18 2.36 7.27 -17.49 -0.13 2.23 16 22 Cl -0.03 -0.36 29.10 -51.86 -1.51 -1.87 16 23 C -0.13 -1.82 9.38 -38.98 -0.37 -2.19 16 24 H 0.04 0.81 5.65 -51.93 -0.29 0.52 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 2.08 6.80 -51.93 -0.35 1.73 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 6.64 6.67 -40.82 -0.27 6.36 16 31 H 0.16 1.96 7.74 -52.49 -0.41 1.55 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 35 H 0.15 1.80 6.54 -52.49 -0.34 1.46 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -28.96 311.46 -7.67 -36.63 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.12 Total: 4.99 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.11 Total: -4.08 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.33 Total: -43.85 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.96 -7.67 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125792586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.034 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds