Wall clock time and date at job start Tue Mar 31 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46836 * 2 1 4 4 N 1.46508 * 109.47132 * 179.97438 * 3 2 1 5 5 C 1.36881 * 119.99731 * 96.70222 * 4 3 2 6 6 H 1.08000 * 120.00050 * 160.39528 * 5 4 3 7 7 C 1.39045 * 120.00383 * 340.40027 * 5 4 3 8 8 N 1.31370 * 119.99816 * 357.54408 * 7 5 4 9 9 Si 1.86796 * 120.00145 * 177.54120 * 7 5 4 10 10 H 1.48503 * 109.46709 * 90.00154 * 9 7 5 11 11 H 1.48494 * 109.47217 * 210.00144 * 9 7 5 12 12 H 1.48505 * 109.47377 * 330.00176 * 9 7 5 13 13 C 1.34778 * 120.00220 * 276.71064 * 4 3 2 14 14 O 1.21592 * 119.99864 * 184.38651 * 13 4 3 15 15 C 1.47664 * 119.99744 * 4.38302 * 13 4 3 16 16 C 1.40156 * 120.55467 * 305.22470 * 15 13 4 17 17 C 1.38235 * 118.30085 * 180.30012 * 16 15 13 18 18 C 1.38566 * 119.30221 * 359.93143 * 17 16 15 19 19 Cl 1.73598 * 119.46783 * 180.02562 * 18 17 16 20 20 N 1.32052 * 121.06131 * 0.06285 * 18 17 16 21 21 C 1.31675 * 121.86553 * 359.97438 * 20 18 17 22 22 C 1.50700 * 119.70945 * 179.97438 * 21 20 18 23 23 H 1.09004 * 109.47252 * 60.00047 * 1 2 3 24 24 H 1.09003 * 109.47148 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47625 * 299.99477 * 1 2 3 26 26 H 1.09006 * 109.46973 * 239.99973 * 2 1 3 27 27 H 1.08996 * 109.47141 * 120.00259 * 2 1 3 28 28 H 1.09000 * 109.47043 * 60.00507 * 3 2 1 29 29 H 1.08996 * 109.47467 * 300.00060 * 3 2 1 30 30 H 0.96998 * 120.00129 * 179.97438 * 8 7 5 31 31 H 1.07995 * 120.84594 * 0.24937 * 16 15 13 32 32 H 1.08002 * 120.34390 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.47437 * 273.51618 * 22 21 20 34 34 H 1.09000 * 109.47177 * 33.52377 * 22 21 20 35 35 H 1.09005 * 109.46607 * 153.51672 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1898 1.5808 -1.1765 6 1 5.2228 1.8957 -1.1664 7 6 3.5555 1.3159 -2.3851 8 7 2.3140 0.8866 -2.3952 9 14 4.4688 1.5705 -3.9946 10 1 5.1676 0.3154 -4.3710 11 1 3.5014 1.9371 -5.0600 12 1 5.4633 2.6613 -3.8324 13 6 4.1784 1.3064 1.1601 14 8 5.3916 1.3863 1.1715 15 6 3.4428 1.0603 2.4166 16 6 2.4206 1.9277 2.8254 17 6 1.7669 1.6566 4.0129 18 6 2.1383 0.5458 4.7532 19 17 1.3197 0.2008 6.2447 20 7 3.1055 -0.2542 4.3429 21 6 3.7576 -0.0372 3.2198 22 6 4.8537 -0.9816 2.7981 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6765 1.9564 -0.8899 30 1 1.8714 0.7022 -3.2383 31 1 2.1513 2.7864 2.2284 32 1 0.9739 2.3029 4.3590 33 1 5.7939 -0.6748 3.2563 34 1 4.6056 -1.9930 3.1198 35 1 4.9543 -0.9599 1.7129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160236128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:29 Heat of formation + Delta-G solvation = 3.891033 kcal Electronic energy + Delta-G solvation = -20552.325108 eV Core-core repulsion = 17383.869601 eV Total energy + Delta-G solvation = -3168.455506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36687 -38.29275 -36.51240 -35.49017 -33.00257 -32.49302 -31.71296 -31.26631 -27.61578 -25.96123 -24.99086 -23.42532 -22.16407 -20.76929 -19.66335 -17.22601 -16.92606 -16.53815 -16.10878 -15.08607 -14.64131 -14.11769 -13.95019 -13.76742 -13.53312 -13.32645 -13.00534 -12.63967 -12.27394 -12.01042 -11.89033 -11.71955 -11.33227 -11.27260 -11.21145 -11.10971 -10.83260 -10.51262 -10.44690 -10.28550 -9.87087 -9.56128 -9.52513 -8.96497 -8.65364 -8.42863 -7.79337 -6.40477 -4.01847 1.00847 1.35834 1.91159 3.06840 3.17234 3.21647 3.53182 3.89528 4.06662 4.52299 4.67012 4.95571 4.96875 5.13666 5.22643 5.51561 5.69582 5.85330 5.94227 5.98846 6.04414 6.11509 6.20623 6.34920 6.35677 6.42697 6.62939 6.73834 6.78723 6.86397 7.24309 7.40670 7.62825 7.89471 7.98829 8.35914 8.99808 9.23043 9.78449 10.51311 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026038 B = 0.005451 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.074165 B = 5135.195048 C = 5701.230006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.115 3.885 4 N -0.424 5.424 5 C -0.295 4.295 6 H 0.104 0.896 7 C 0.028 3.972 8 N -0.869 5.869 9 Si 0.933 3.067 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.478 3.522 14 O -0.580 6.580 15 C -0.127 4.127 16 C -0.046 4.046 17 C -0.164 4.164 18 C 0.174 3.826 19 Cl -0.046 7.046 20 N -0.482 5.482 21 C 0.179 3.821 22 C -0.098 4.098 23 H 0.056 0.944 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.024 0.976 28 H 0.035 0.965 29 H 0.116 0.884 30 H 0.269 0.731 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 0.004 7.501 9.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C -0.008 4.008 4 N -0.140 5.140 5 C -0.423 4.423 6 H 0.122 0.878 7 C -0.175 4.175 8 N -0.509 5.509 9 Si 0.759 3.241 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.266 3.734 14 O -0.466 6.466 15 C -0.133 4.133 16 C -0.072 4.072 17 C -0.185 4.185 18 C 0.009 3.991 19 Cl -0.018 7.018 20 N -0.194 5.194 21 C 0.040 3.960 22 C -0.156 4.156 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.117 0.883 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.793 -0.738 7.929 9.295 hybrid contribution -0.285 0.715 -1.014 1.273 sum -5.079 -0.023 6.915 8.580 Atomic orbital electron populations 1.21579 0.97250 1.00023 1.00533 1.21873 0.94111 0.98108 1.01624 1.21936 0.80167 0.97450 1.01282 1.43748 1.05776 1.59203 1.05303 1.19814 0.98048 1.42465 0.81998 0.87812 1.25400 0.96225 0.96013 0.99847 1.70004 1.10908 1.42923 1.27021 0.85811 0.78942 0.78982 0.80335 1.20226 1.20797 1.19388 1.17571 0.87060 0.85645 0.83168 1.90643 1.13071 1.56828 1.86044 1.21259 0.97324 0.96396 0.98289 1.21819 0.92597 0.98629 0.94189 1.21627 1.02953 0.98111 0.95812 1.21551 0.94434 0.93091 0.89993 1.98372 1.76093 1.95376 1.31921 1.66732 1.07156 1.29899 1.15603 1.21150 0.94218 0.93145 0.87476 1.20735 0.94974 0.96743 1.03110 0.92527 0.94195 0.94583 0.88350 0.95724 0.94719 0.86650 0.92032 0.83295 0.83910 0.89853 0.90936 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.91 37.15 0.37 -1.93 16 2 C -0.12 -2.40 5.57 -26.73 -0.15 -2.55 16 3 C 0.11 2.40 4.29 -4.04 -0.02 2.38 16 4 N -0.42 -10.14 2.64 -115.94 -0.31 -10.44 16 5 C -0.30 -7.58 9.40 -15.00 -0.14 -7.73 16 6 H 0.10 2.81 7.30 -52.49 -0.38 2.43 16 7 C 0.03 0.67 5.29 -17.45 -0.09 0.58 16 8 N -0.87 -20.42 7.85 55.50 0.44 -19.99 16 9 Si 0.93 19.32 29.55 -169.99 -5.02 14.30 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 13 C 0.48 11.23 5.98 -12.41 -0.07 11.16 16 14 O -0.58 -15.36 15.70 5.28 0.08 -15.28 16 15 C -0.13 -2.51 4.25 -104.82 -0.45 -2.96 16 16 C -0.05 -0.77 7.99 -38.86 -0.31 -1.08 16 17 C -0.16 -2.39 9.86 -39.46 -0.39 -2.78 16 18 C 0.17 2.78 7.27 -17.34 -0.13 2.65 16 19 Cl -0.05 -0.62 29.10 -51.86 -1.51 -2.13 16 20 N -0.48 -8.68 10.24 -6.26 -0.06 -8.74 16 21 C 0.18 3.40 6.82 -82.15 -0.56 2.83 16 22 C -0.10 -1.74 9.42 36.01 0.34 -1.40 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.10 2.26 6.22 -51.93 -0.32 1.94 16 27 H 0.02 0.50 7.31 -51.93 -0.38 0.12 16 28 H 0.03 0.64 4.15 -51.93 -0.22 0.43 16 29 H 0.12 2.61 5.88 -51.93 -0.31 2.31 16 30 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 31 H 0.15 2.25 6.64 -52.49 -0.35 1.90 16 32 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.71 6.67 -51.93 -0.35 1.37 16 LS Contribution 303.70 15.07 4.58 4.58 Total: -1.00 -27.16 303.70 -7.38 -34.54 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.97 Total: 3.96 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.60 Total: -0.80 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.07 Total: -39.17 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.08 Total: -15.28 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.51 Total: -2.13 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.16 -7.38 -34.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160236128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.428 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds