Wall clock time and date at job start Tue Mar 31 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29315 * 126.06706 * 2 1 4 4 N 1.26100 * 117.96979 * 179.76403 * 3 2 1 5 5 C 1.30239 * 117.62172 * 0.55105 * 4 3 2 6 6 N 1.38702 * 126.17175 * 179.70669 * 5 4 3 7 7 C 1.46900 * 110.99746 * 124.30540 * 6 5 4 8 8 C 1.53233 * 109.34038 * 172.75058 * 7 6 5 9 9 N 1.47082 * 108.52029 * 53.82876 * 8 7 6 10 10 C 1.34778 * 120.87605 * 128.83982 * 9 8 7 11 11 O 1.21688 * 119.99657 * 174.81285 * 10 9 8 12 12 C 1.46371 * 120.00400 * 354.80954 * 10 9 8 13 13 H 1.08005 * 120.00124 * 351.62370 * 12 10 9 14 14 C 1.40049 * 120.00402 * 171.62593 * 12 10 9 15 15 N 1.30675 * 119.99844 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00158 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47015 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47222 * 120.00046 * 16 14 12 19 19 H 1.48505 * 109.46833 * 239.99722 * 16 14 12 20 20 C 1.47073 * 118.24232 * 308.81879 * 9 8 7 21 21 C 1.46904 * 110.99711 * 0.02562 * 6 5 4 22 22 S 1.76481 * 126.06213 * 180.31985 * 2 1 3 23 23 H 1.09004 * 109.46740 * 269.68606 * 1 2 3 24 24 H 1.09000 * 109.47103 * 29.68146 * 1 2 3 25 25 H 1.08995 * 109.47426 * 149.68908 * 1 2 3 26 26 H 1.08995 * 109.49547 * 292.71584 * 7 6 5 27 27 H 1.08998 * 109.49252 * 52.79039 * 7 6 5 28 28 H 1.09009 * 109.62877 * 294.12248 * 8 7 6 29 29 H 1.09001 * 109.63342 * 173.54236 * 8 7 6 30 30 H 0.96996 * 120.00299 * 180.02562 * 15 14 12 31 31 H 1.09006 * 109.62685 * 291.47788 * 20 9 8 32 32 H 1.08997 * 109.63470 * 170.89477 * 20 9 8 33 33 H 1.09003 * 109.49170 * 307.20806 * 21 6 5 34 34 H 1.08994 * 109.49359 * 67.26379 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2683 1.0453 0.0000 4 7 3.5167 0.8677 0.0046 5 6 3.9521 -0.3598 -0.0021 6 7 5.2810 -0.7571 -0.0044 7 6 5.5640 -1.6545 1.1236 8 6 6.9845 -2.2122 0.9844 9 7 7.9169 -1.0842 0.8379 10 6 9.0112 -0.9855 1.6184 11 8 9.8210 -0.0988 1.4215 12 6 9.2256 -1.9448 2.7030 13 1 8.4471 -2.6458 2.9656 14 6 10.4402 -1.9537 3.4002 15 7 11.3823 -1.1058 3.0822 16 14 10.7139 -3.1784 4.7838 17 1 9.5027 -4.0223 4.9448 18 1 11.8787 -4.0403 4.4588 19 1 10.9779 -2.4458 6.0483 20 6 7.6238 -0.0670 -0.1832 21 6 6.1781 0.4061 0.0023 22 16 2.5459 -1.4266 -0.0080 23 1 -0.3633 -0.0056 1.0277 24 1 -0.3633 0.8928 -0.5089 25 1 -0.3634 -0.8871 -0.5186 26 1 5.4806 -1.1008 2.0587 27 1 4.8487 -2.4769 1.1225 28 1 7.0421 -2.8516 0.1035 29 1 7.2414 -2.7864 1.8746 30 1 12.2236 -1.1121 3.5648 31 1 7.7428 -0.5003 -1.1764 32 1 8.3033 0.7770 -0.0651 33 1 5.9082 1.0784 -0.8122 34 1 6.0859 0.9311 0.9530 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170516148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:25 Heat of formation + Delta-G solvation = 45.898770 kcal Electronic energy + Delta-G solvation = -19707.820551 eV Core-core repulsion = 16575.523094 eV Total energy + Delta-G solvation = -3132.297457 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11046 -39.14507 -36.85295 -33.93106 -32.65943 -32.33113 -31.00691 -28.81758 -26.87282 -26.05291 -24.30923 -23.45119 -21.38760 -19.98016 -19.14433 -18.61449 -17.18031 -16.40216 -15.86190 -15.55640 -14.92855 -14.60851 -14.47972 -14.25968 -14.05515 -13.87356 -13.30189 -13.13344 -12.85196 -12.65913 -12.02851 -11.67622 -11.46334 -11.24591 -11.06673 -11.00376 -10.90506 -10.50654 -10.44077 -10.30974 -10.16933 -9.99374 -9.63958 -8.95154 -8.44883 -7.70344 -7.41069 -6.29399 -4.74768 0.39537 0.64662 1.22354 2.53483 3.07200 3.15521 3.19145 3.39880 3.99741 4.14747 4.37269 4.46653 4.60067 4.88622 5.11154 5.13323 5.17051 5.32696 5.40871 5.46483 5.53568 5.61523 5.72281 5.84092 5.97315 6.24092 6.33530 6.50713 6.61740 6.67737 7.35737 7.41652 7.99074 8.21926 8.61847 8.92777 9.28979 10.46481 10.64981 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.003989 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.755329 B = 7017.727853 C = 7510.277715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.005 3.995 3 N -0.244 5.244 4 N -0.314 5.314 5 C 0.229 3.771 6 N -0.436 5.436 7 C 0.040 3.960 8 C 0.128 3.872 9 N -0.646 5.646 10 C 0.560 3.440 11 O -0.574 6.574 12 C -0.545 4.545 13 H 0.073 0.927 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.907 3.093 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.276 1.276 20 C 0.124 3.876 21 C 0.053 3.947 22 S 0.054 5.946 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.269 0.731 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.748 -3.827 -4.442 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.278 4.278 3 N -0.079 5.079 4 N -0.156 5.156 5 C -0.142 4.142 6 N -0.157 5.157 7 C -0.087 4.087 8 C 0.003 3.997 9 N -0.385 5.385 10 C 0.367 3.633 11 O -0.456 6.456 12 C -0.582 4.582 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.732 3.268 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.001 4.001 21 C -0.076 4.076 22 S 0.294 5.706 23 H 0.106 0.894 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.854 -3.231 -4.930 18.802 hybrid contribution -0.053 -0.360 1.113 1.171 sum -17.907 -3.592 -3.818 18.658 Atomic orbital electron populations 1.20314 0.84000 1.04366 1.04084 1.29573 1.02519 0.89032 1.06664 1.70749 0.97042 1.26894 1.13218 1.71644 1.05555 1.16582 1.21869 1.28305 0.96741 0.90377 0.98743 1.58938 0.96648 1.18903 1.41232 1.23032 1.00675 0.95195 0.89812 1.21544 0.84992 0.90043 1.03101 1.48366 1.27042 1.24428 1.38694 1.18290 0.78260 0.85570 0.81229 1.90604 1.44219 1.37771 1.72971 1.20953 1.01308 1.19257 1.16675 0.90860 1.25728 0.95393 0.95133 0.96982 1.70003 1.04058 1.30105 1.35339 0.86317 0.79013 0.80608 0.80862 1.18714 1.20081 1.20110 1.21310 0.92221 0.94351 0.92236 1.22732 0.92431 0.89400 1.03036 1.85700 1.00185 1.11920 1.72764 0.89360 0.88948 0.89898 0.92131 0.89726 0.92465 0.87392 0.91978 0.92736 0.88491 0.89041 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.51 36.01 0.38 -0.07 16 2 C 0.01 0.06 7.79 -13.34 -0.10 -0.04 16 3 N -0.24 -3.68 11.55 33.57 0.39 -3.29 16 4 N -0.31 -5.21 10.56 31.00 0.33 -4.88 16 5 C 0.23 3.45 7.04 -87.14 -0.61 2.83 16 6 N -0.44 -6.78 4.70 -173.15 -0.81 -7.59 16 7 C 0.04 0.60 5.52 -3.70 -0.02 0.58 16 8 C 0.13 2.22 6.52 -3.60 -0.02 2.20 16 9 N -0.65 -14.10 3.01 -174.12 -0.52 -14.62 16 10 C 0.56 15.38 7.61 -12.99 -0.10 15.28 16 11 O -0.57 -18.09 14.55 5.20 0.08 -18.02 16 12 C -0.55 -14.62 8.84 -35.63 -0.32 -14.93 16 13 H 0.07 1.76 5.74 -52.48 -0.30 1.46 16 14 C 0.09 2.36 5.50 -17.37 -0.10 2.27 16 15 N -0.77 -22.38 11.86 55.55 0.66 -21.72 16 16 Si 0.91 19.36 29.56 -169.99 -5.02 14.33 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 C 0.12 2.37 6.58 -3.60 -0.02 2.35 16 21 C 0.05 0.89 5.05 -3.70 -0.02 0.87 16 22 S 0.05 0.62 22.75 -107.50 -2.45 -1.82 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.03 7.41 -51.93 -0.38 0.64 16 28 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 29 H 0.11 1.90 5.39 -51.93 -0.28 1.62 16 30 H 0.27 7.12 8.29 -40.82 -0.34 6.79 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.10 2.05 7.10 -51.93 -0.37 1.68 16 33 H 0.09 1.45 7.86 -51.93 -0.41 1.04 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 299.59 15.07 4.51 4.51 Total: -1.00 -34.27 299.59 -7.61 -41.88 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -3.84 Total: -0.12 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -0.93 Total: 11.34 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.04 Total: -52.11 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.08 Total: -18.02 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.45 Total: -1.82 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.27 -7.61 -41.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170516148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.780 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds