Wall clock time and date at job start Tue Mar 31 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33482 * 125.49845 * 2 1 4 4 C 1.30221 * 109.67524 * 180.12641 * 3 2 1 5 5 N 1.34695 * 108.19851 * 359.71564 * 4 3 2 6 6 N 1.30964 * 125.49369 * 180.02562 * 2 1 3 7 7 C 1.46265 * 125.43243 * 180.62363 * 5 4 3 8 8 C 1.53329 * 109.20739 * 341.44606 * 7 5 4 9 9 N 1.47095 * 109.12922 * 45.56728 * 8 7 5 10 10 C 1.34780 * 120.97679 * 116.66751 * 9 8 7 11 11 O 1.21285 * 119.99700 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00239 * 180.02562 * 10 9 8 13 13 S 1.81003 * 109.47075 * 179.97438 * 12 10 9 14 14 C 1.76192 * 100.00194 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99905 * 0.02562 * 14 13 12 16 16 C 1.38803 * 120.00451 * 180.02562 * 14 13 12 17 17 N 1.31632 * 119.99475 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00403 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46840 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47143 * 120.00015 * 18 16 14 21 21 H 1.48497 * 109.47099 * 240.00093 * 18 16 14 22 22 C 1.47486 * 118.05490 * 296.68458 * 9 8 7 23 23 H 1.09000 * 109.46789 * 269.95472 * 1 2 3 24 24 H 1.08995 * 109.47261 * 29.95231 * 1 2 3 25 25 H 1.08998 * 109.47687 * 149.96068 * 1 2 3 26 26 H 1.08999 * 109.51557 * 221.53184 * 7 5 4 27 27 H 1.08994 * 109.51834 * 101.36857 * 7 5 4 28 28 H 1.08996 * 109.52881 * 285.67372 * 8 7 5 29 29 H 1.09003 * 109.52753 * 165.45854 * 8 7 5 30 30 H 1.08995 * 109.47187 * 299.99771 * 12 10 9 31 31 H 1.09003 * 109.47348 * 60.00335 * 12 10 9 32 32 H 0.96996 * 119.99663 * 179.97438 * 17 16 14 33 33 H 1.08993 * 109.94198 * 283.66072 * 22 9 8 34 34 H 1.09003 * 109.94223 * 162.41988 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5349 0.7316 -0.0027 5 7 3.5908 -0.6141 0.0018 6 7 2.2674 -1.0663 -0.0005 7 6 4.8166 -1.4119 0.0137 8 6 5.9917 -0.5380 -0.4406 9 7 5.9224 0.7594 0.2490 10 6 6.8966 1.1481 1.0954 11 8 7.8486 0.4244 1.2975 12 6 6.8029 2.4818 1.7908 13 16 8.2507 2.7116 2.8526 14 6 7.8908 4.3016 3.5208 15 1 6.9869 4.8171 3.2313 16 6 8.7688 4.8919 4.4193 17 7 9.8702 4.2634 4.7725 18 14 8.3869 6.5774 5.1282 19 1 7.0974 7.0656 4.5769 20 1 8.2879 6.4816 6.6068 21 1 9.4714 7.5245 4.7650 22 6 4.7553 1.6225 -0.0125 23 1 -0.3633 -0.0008 1.0277 24 1 -0.3633 0.8904 -0.5131 25 1 -0.3634 -0.8896 -0.5144 26 1 4.7076 -2.2572 -0.6658 27 1 5.0036 -1.7772 1.0235 28 1 5.9343 -0.3815 -1.5177 29 1 6.9309 -1.0326 -0.1927 30 1 6.7675 3.2776 1.0469 31 1 5.8986 2.5120 2.3986 32 1 10.4839 4.6761 5.4000 33 1 4.8580 2.1016 -0.9861 34 1 4.6698 2.3787 0.7679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267658664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:49 Heat of formation + Delta-G solvation = 62.520537 kcal Electronic energy + Delta-G solvation = -19334.386764 eV Core-core repulsion = 16202.810081 eV Total energy + Delta-G solvation = -3131.576683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.53345 -39.74680 -36.69576 -34.16114 -32.48785 -32.43235 -31.03688 -29.10867 -28.78095 -26.16360 -25.53118 -23.93246 -21.38878 -20.63598 -19.05194 -17.75116 -17.45755 -16.83216 -16.52832 -15.74801 -15.62830 -14.84721 -14.58105 -14.30338 -13.93340 -13.90134 -13.55114 -13.30699 -13.04497 -12.78440 -12.64694 -12.46880 -12.15398 -11.94824 -11.79074 -11.10148 -11.07872 -10.79897 -10.22803 -9.99268 -9.87177 -9.69266 -9.49989 -9.13004 -9.05621 -8.32806 -6.58523 -6.27299 -3.99039 1.36785 1.93953 2.52745 2.65890 2.75240 3.18654 3.19355 3.28072 3.41660 3.62677 4.03937 4.13769 4.34475 4.44562 4.62895 4.83450 4.90038 4.96488 5.08655 5.09985 5.27797 5.32266 5.35052 5.51175 5.52875 5.56621 5.72251 5.96239 5.99664 6.17983 6.25843 6.51163 7.09027 7.55401 7.90713 8.20715 8.30337 9.18671 10.80187 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.003930 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.337150 B = 7123.213806 C = 8029.162514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.217 3.783 3 N -0.530 5.530 4 C 0.268 3.732 5 N -0.371 5.371 6 N -0.316 5.316 7 C 0.113 3.887 8 C 0.099 3.901 9 N -0.632 5.632 10 C 0.544 3.456 11 O -0.503 6.503 12 C -0.156 4.156 13 S -0.058 6.058 14 C -0.536 4.536 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.279 1.279 22 C 0.193 3.807 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.268 0.732 33 H 0.109 0.891 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.119 -8.271 -12.171 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.064 4.064 3 N -0.259 5.259 4 C -0.010 4.010 5 N -0.162 5.162 6 N -0.145 5.145 7 C -0.010 4.010 8 C -0.026 4.026 9 N -0.370 5.370 10 C 0.333 3.667 11 O -0.375 6.375 12 C -0.306 4.306 13 S 0.169 5.831 14 C -0.684 4.684 15 H 0.093 0.907 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.746 3.254 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.205 1.205 22 C 0.067 3.933 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.144 0.856 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.815 -9.824 -11.738 19.963 hybrid contribution -1.154 1.811 0.260 2.163 sum -13.969 -8.014 -11.478 19.776 Atomic orbital electron populations 1.20077 0.83724 1.03953 1.03786 1.24431 0.98265 0.85385 0.98363 1.70124 0.99405 1.30884 1.25499 1.24432 0.95147 0.84313 0.97105 1.50128 1.05755 1.05787 1.54548 1.77929 0.86607 1.22603 1.27338 1.22340 0.79359 0.94603 1.04718 1.21956 0.98972 0.84352 0.97276 1.48323 1.22548 1.19169 1.46946 1.20419 0.80896 0.88244 0.77138 1.90721 1.31107 1.54733 1.60984 1.23611 1.08051 0.95475 1.03480 1.85411 1.21573 1.24610 1.51522 1.22896 1.10743 1.03487 1.31285 0.90695 1.24998 0.94423 0.98576 0.95533 1.70020 1.10400 1.37848 1.31984 0.86100 0.78515 0.82059 0.78758 1.19506 1.20551 1.20518 1.20376 0.77124 0.90411 1.05364 0.89826 0.89490 0.90088 0.87534 0.88797 0.89841 0.85638 0.88595 0.88888 0.92169 0.87316 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.00 0.38 -0.09 16 2 C 0.22 2.79 8.15 -156.43 -1.27 1.52 16 3 N -0.53 -7.36 11.18 -7.99 -0.09 -7.45 16 4 C 0.27 3.44 7.85 -155.77 -1.22 2.22 16 5 N -0.37 -4.71 4.03 -58.26 -0.23 -4.94 16 6 N -0.32 -4.34 12.73 32.50 0.41 -3.92 16 7 C 0.11 1.09 7.46 -4.00 -0.03 1.06 16 8 C 0.10 0.96 6.44 -3.55 -0.02 0.94 16 9 N -0.63 -7.95 2.97 -173.34 -0.52 -8.47 16 10 C 0.54 9.29 7.73 -10.99 -0.08 9.21 16 11 O -0.50 -10.31 15.30 5.55 0.08 -10.23 16 12 C -0.16 -2.93 4.59 36.00 0.17 -2.77 16 13 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 14 C -0.54 -14.80 9.50 30.94 0.29 -14.51 16 15 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 16 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 17 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 18 Si 0.92 21.00 29.55 -169.99 -5.02 15.98 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.19 2.10 6.65 -4.46 -0.03 2.08 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.13 1.28 7.02 -51.93 -0.36 0.91 16 30 H 0.10 1.62 8.13 -51.92 -0.42 1.20 16 31 H 0.09 1.65 7.56 -51.91 -0.39 1.26 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.13 1.37 6.26 -51.93 -0.33 1.05 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -35.47 307.31 -8.14 -43.61 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.01 Total: -2.27 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.92 Total: 1.63 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.31 Total: -49.64 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.47 -8.14 -43.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267658664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.131 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds