Wall clock time and date at job start Tue Mar 31 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.94146 * 2 1 4 4 C 1.50971 * 110.02429 * 238.76029 * 2 1 3 5 5 N 1.29731 * 128.68084 * 49.81649 * 4 2 1 6 6 N 1.28922 * 109.43024 * 179.63042 * 5 4 2 7 7 C 1.30827 * 109.74350 * 0.11171 * 6 5 4 8 8 N 1.34795 * 107.11743 * 0.14333 * 7 6 5 9 9 C 1.46217 * 128.60476 * 179.38174 * 8 7 6 10 10 C 1.53810 * 109.15618 * 161.71768 * 9 8 7 11 11 N 1.47086 * 108.98232 * 45.82065 * 10 9 8 12 12 C 1.34771 * 120.94249 * 116.47684 * 11 10 9 13 13 O 1.21282 * 120.00130 * 174.20875 * 12 11 10 14 14 C 1.50703 * 120.00096 * 354.20569 * 12 11 10 15 15 S 1.80999 * 109.47185 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99940 * 179.97438 * 15 14 12 17 17 H 1.07990 * 120.00307 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99943 * 180.27558 * 16 15 14 19 19 N 1.31624 * 120.00002 * 179.72592 * 18 16 15 20 20 Si 1.86806 * 119.99925 * 359.72268 * 18 16 15 21 21 H 1.48504 * 109.46519 * 90.00235 * 20 18 16 22 22 H 1.48494 * 109.47099 * 209.99852 * 20 18 16 23 23 H 1.48493 * 109.47032 * 330.00435 * 20 18 16 24 24 H 1.09001 * 109.46395 * 309.41097 * 1 2 3 25 25 H 1.08991 * 109.47228 * 69.41560 * 1 2 3 26 26 H 1.08996 * 109.47067 * 189.41522 * 1 2 3 27 27 H 1.08001 * 126.44436 * 180.12847 * 7 6 5 28 28 H 1.09002 * 109.52164 * 281.73337 * 9 8 7 29 29 H 1.09003 * 109.52172 * 41.91149 * 9 8 7 30 30 H 1.08999 * 109.63272 * 285.97542 * 10 9 8 31 31 H 1.09000 * 109.64192 * 165.67374 * 10 9 8 32 32 H 1.08996 * 109.47221 * 60.00367 * 14 12 11 33 33 H 1.08999 * 109.47461 * 300.00009 * 14 12 11 34 34 H 0.97003 * 119.99947 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9018 1.0246 0.0000 4 6 2.0470 -0.7356 -1.2128 5 7 1.7107 -0.5852 -2.4567 6 7 2.3908 -1.4018 -3.1866 7 6 3.1898 -2.1099 -2.4305 8 7 2.9902 -1.7102 -1.1587 9 6 3.6286 -2.1996 0.0623 10 6 3.4353 -1.1640 1.1829 11 7 2.0336 -0.7184 1.1859 12 6 1.2336 -0.9547 2.2445 13 8 0.1139 -0.4897 2.2742 14 6 1.7305 -1.7967 3.3914 15 16 0.4347 -1.9294 4.6481 16 6 1.2614 -2.9358 5.8349 17 1 2.2721 -3.2684 5.6505 18 6 0.6116 -3.3053 7.0045 19 7 1.2273 -4.0616 7.8885 20 14 -1.1364 -2.7293 7.3239 21 1 -2.0932 -3.7221 6.7724 22 1 -1.3531 -2.5926 8.7866 23 1 -1.3525 -1.4155 6.6665 24 1 -0.3632 0.6525 0.7940 25 1 -0.3633 0.3613 -0.9620 26 1 -0.3633 -1.0138 0.1681 27 1 3.8795 -2.8717 -2.7627 28 1 3.1748 -3.1461 0.3564 29 1 4.6939 -2.3457 -0.1170 30 1 4.0886 -0.3092 1.0083 31 1 3.6756 -1.6162 2.1451 32 1 2.6140 -1.3311 3.8279 33 1 1.9863 -2.7917 3.0275 34 1 0.7731 -4.3202 8.7057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277014178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:55 Heat of formation + Delta-G solvation = 68.216232 kcal Electronic energy + Delta-G solvation = -19877.494093 eV Core-core repulsion = 16746.164394 eV Total energy + Delta-G solvation = -3131.329699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.52632 -40.14529 -37.01106 -34.74419 -33.05150 -32.54167 -30.30054 -29.68316 -28.22167 -25.72646 -25.00281 -23.89025 -22.52753 -21.08066 -19.15379 -18.14361 -17.44102 -16.86976 -16.68362 -16.15868 -15.84957 -15.07770 -15.03658 -14.70500 -14.17240 -13.95387 -13.65165 -13.26719 -12.88903 -12.64784 -12.43042 -12.29566 -12.07380 -11.77156 -11.54279 -11.35291 -11.09215 -10.76864 -10.63955 -10.43573 -9.94733 -9.55637 -9.26199 -9.10343 -9.02664 -8.63109 -7.04847 -6.38980 -4.12298 1.55738 2.03103 2.42168 2.62972 2.67103 2.92691 3.25975 3.42431 3.44932 3.81449 3.90513 4.22216 4.23979 4.33748 4.46145 4.55283 4.78455 4.89194 4.95132 5.00386 5.06846 5.16332 5.19871 5.49489 5.52245 5.66730 5.75363 5.83111 5.99440 6.12897 6.43976 6.52959 7.09040 7.83569 8.14596 8.30007 8.48500 9.07019 10.70068 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034882 B = 0.004218 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.523558 B = 6636.169738 C = 7135.565544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.238 3.762 3 H 0.103 0.897 4 C 0.170 3.830 5 N -0.281 5.281 6 N -0.301 5.301 7 C 0.154 3.846 8 N -0.470 5.470 9 C 0.085 3.915 10 C 0.094 3.906 11 N -0.629 5.629 12 C 0.540 3.460 13 O -0.496 6.496 14 C -0.125 4.125 15 S -0.136 6.136 16 C -0.525 4.525 17 H 0.088 0.912 18 C 0.098 3.902 19 N -0.878 5.878 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.235 1.235 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.220 0.780 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.004 4.573 -15.082 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.133 3.867 3 H 0.120 0.880 4 C -0.099 4.099 5 N -0.121 5.121 6 N -0.141 5.141 7 C -0.133 4.133 8 N -0.161 5.161 9 C -0.039 4.039 10 C -0.030 4.030 11 N -0.367 5.367 12 C 0.329 3.671 13 O -0.368 6.368 14 C -0.276 4.276 15 S 0.090 5.910 16 C -0.672 4.672 17 H 0.106 0.894 18 C -0.112 4.112 19 N -0.515 5.515 20 Si 0.680 3.320 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.159 1.159 24 H 0.117 0.883 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.236 0.764 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.638 5.665 -16.069 17.947 hybrid contribution 1.662 -1.350 1.380 2.547 sum 7.300 4.314 -14.689 16.960 Atomic orbital electron populations 1.22153 0.89777 1.04657 1.03158 1.19742 0.97045 0.93309 0.76625 0.87968 1.25148 0.93334 0.94032 0.97383 1.74041 1.20390 1.18717 0.98945 1.74502 1.07172 1.06155 1.26230 1.26347 1.03508 1.03305 0.80172 1.46131 1.31746 1.29549 1.08713 1.22598 0.99607 0.99470 0.82201 1.22169 0.83253 0.97794 0.99755 1.48406 1.11547 1.59606 1.17132 1.20312 0.84834 0.79959 0.82035 1.90731 1.19164 1.48997 1.77932 1.23367 1.04992 1.01657 0.97565 1.84870 1.20223 1.68956 1.16936 1.22276 1.03914 1.35869 1.05156 0.89375 1.24701 0.98345 0.93519 0.94589 1.69926 1.37829 1.34245 1.09453 0.86752 0.84400 0.81991 0.78822 1.19158 1.19825 1.15894 0.88292 0.91562 0.91866 0.76358 0.88337 0.87217 0.89470 0.86195 0.88267 0.88551 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.71 37.16 0.29 -1.59 16 2 C 0.24 2.84 3.83 -68.39 -0.26 2.58 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.17 2.13 7.17 -155.29 -1.11 1.01 16 5 N -0.28 -4.18 12.15 32.79 0.40 -3.78 16 6 N -0.30 -4.19 12.23 29.60 0.36 -3.83 16 7 C 0.15 1.50 12.81 -90.33 -1.16 0.35 16 8 N -0.47 -4.60 3.11 -115.19 -0.36 -4.96 16 9 C 0.09 0.54 7.20 -3.77 -0.03 0.51 16 10 C 0.09 0.70 6.36 -3.30 -0.02 0.68 16 11 N -0.63 -7.35 2.96 -165.54 -0.49 -7.84 16 12 C 0.54 8.46 7.41 -10.99 -0.08 8.38 16 13 O -0.50 -9.34 12.04 5.56 0.07 -9.28 16 14 C -0.13 -2.12 4.56 36.01 0.16 -1.95 16 15 S -0.14 -3.20 18.55 -107.50 -1.99 -5.20 16 16 C -0.52 -14.25 10.04 30.94 0.31 -13.94 16 17 H 0.09 2.48 8.03 -52.49 -0.42 2.06 16 18 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 19 N -0.88 -25.51 13.97 55.49 0.78 -24.74 16 20 Si 0.86 20.93 27.73 -169.99 -4.71 16.22 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.23 -5.71 6.74 56.52 0.38 -5.33 16 24 H 0.10 1.43 6.39 -51.93 -0.33 1.10 16 25 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.06 0.98 7.41 -51.93 -0.38 0.60 16 27 H 0.22 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.12 0.79 5.97 -51.93 -0.31 0.48 16 32 H 0.10 1.50 7.52 -51.92 -0.39 1.11 16 33 H 0.10 1.49 8.09 -51.92 -0.42 1.07 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 296.75 15.07 4.47 4.47 Total: -1.00 -34.99 296.75 -7.43 -42.41 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -3.95 Total: -2.15 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.00 Total: -1.34 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.69 Total: -45.14 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.71 Total: 16.22 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -1.99 Total: -5.20 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.99 -7.43 -42.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277014178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.630 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds