Wall clock time and date at job start Tue Mar 31 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.93626 * 2 1 4 4 C 1.50971 * 109.95648 * 121.28961 * 2 1 3 5 5 N 1.29724 * 128.67447 * 288.70683 * 4 2 1 6 6 N 1.28933 * 109.42590 * 179.62485 * 5 4 2 7 7 C 1.30820 * 109.73990 * 0.11541 * 6 5 4 8 8 N 1.34788 * 107.12220 * 0.12421 * 7 6 5 9 9 C 1.46224 * 128.60490 * 179.54129 * 8 7 6 10 10 C 1.53340 * 109.17425 * 161.74629 * 9 8 7 11 11 N 1.47078 * 109.23803 * 45.65397 * 10 9 8 12 12 C 1.34779 * 120.94812 * 116.39772 * 11 10 9 13 13 O 1.21276 * 120.00103 * 180.02562 * 12 11 10 14 14 C 1.50699 * 119.99710 * 0.02607 * 12 11 10 15 15 S 1.81001 * 109.47050 * 179.97438 * 14 12 11 16 16 C 1.76202 * 99.99888 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00142 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99651 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99828 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00073 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47365 * 90.00091 * 20 18 16 22 22 H 1.48510 * 109.47120 * 209.99828 * 20 18 16 23 23 H 1.48500 * 109.47436 * 329.99648 * 20 18 16 24 24 H 1.09001 * 109.47002 * 181.19247 * 1 2 3 25 25 H 1.08993 * 109.46955 * 301.19684 * 1 2 3 26 26 H 1.09000 * 109.47050 * 61.19513 * 1 2 3 27 27 H 1.08003 * 126.43761 * 180.11136 * 7 6 5 28 28 H 1.08990 * 109.52188 * 41.83423 * 9 8 7 29 29 H 1.09001 * 109.51796 * 281.65111 * 9 8 7 30 30 H 1.09001 * 109.50386 * 285.72776 * 10 9 8 31 31 H 1.08994 * 109.51023 * 165.58698 * 10 9 8 32 32 H 1.08998 * 109.47381 * 299.99895 * 14 12 11 33 33 H 1.09005 * 109.47112 * 59.99722 * 14 12 11 34 34 H 0.97006 * 120.00415 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9017 1.0247 0.0000 4 6 2.0453 -0.7370 1.2127 5 7 2.0167 -0.3706 2.4567 6 7 2.5532 -1.2882 3.1865 7 6 2.9488 -2.2794 2.4299 8 7 2.6416 -1.9551 1.1582 9 6 2.8836 -2.7222 -0.0629 10 6 1.9801 -2.1880 -1.1807 11 7 2.0335 -0.7182 -1.1862 12 6 2.5289 -0.0466 -2.2445 13 8 2.5653 1.1655 -2.2306 14 6 3.0376 -0.8020 -3.4452 15 16 3.6323 0.3713 -4.6886 16 6 4.1533 -0.7506 -5.9434 17 1 4.0493 -1.8150 -5.7932 18 6 4.6973 -0.2663 -7.1250 19 7 5.0869 -1.1044 -8.0622 20 14 4.8778 1.5747 -7.3845 21 1 6.2037 2.0176 -6.8833 22 1 4.7678 1.8836 -8.8329 23 1 3.8055 2.2865 -6.6438 24 1 -0.3633 -1.0275 0.0214 25 1 -0.3633 0.5323 0.8790 26 1 -0.3633 0.4952 -0.9005 27 1 3.4311 -3.1869 2.7619 28 1 2.6581 -3.7733 0.1167 29 1 3.9278 -2.6180 -0.3575 30 1 0.9546 -2.5143 -1.0070 31 1 2.3261 -2.5685 -2.1416 32 1 3.8548 -1.4570 -3.1430 33 1 2.2299 -1.3999 -3.8673 34 1 5.4668 -0.7660 -8.8882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277014180.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:58 Heat of formation + Delta-G solvation = 57.597977 kcal Electronic energy + Delta-G solvation = -19763.610278 eV Core-core repulsion = 16631.820137 eV Total energy + Delta-G solvation = -3131.790141 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.54437 -40.00892 -37.13097 -34.84481 -32.91508 -32.54000 -30.30085 -29.69423 -28.65161 -25.73162 -24.66878 -24.20117 -22.73585 -20.94167 -18.92278 -18.22432 -17.46577 -17.23799 -16.67346 -16.00709 -15.69558 -15.17608 -15.05841 -14.59842 -14.20501 -14.11143 -13.68037 -13.14210 -13.08338 -12.86540 -12.53043 -12.27394 -12.26225 -11.82319 -11.54674 -11.35833 -11.09107 -10.77873 -10.65198 -10.44759 -9.96310 -9.76035 -9.50952 -9.14487 -9.08678 -8.62961 -7.05172 -6.38909 -4.12379 1.54880 2.01866 2.41777 2.60863 2.65846 2.91891 3.26161 3.42846 3.44791 3.77538 3.91834 4.21821 4.23864 4.33223 4.45061 4.54976 4.80363 4.81319 4.88322 5.00436 5.07431 5.10463 5.16780 5.36167 5.46187 5.51415 5.66557 5.74797 5.79218 5.90868 6.11689 6.51647 7.04835 7.83621 8.09841 8.29973 8.47066 9.07085 10.70104 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034702 B = 0.004071 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.673792 B = 6875.504860 C = 7212.833089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.230 3.770 3 H 0.130 0.870 4 C 0.174 3.826 5 N -0.283 5.283 6 N -0.301 5.301 7 C 0.155 3.845 8 N -0.470 5.470 9 C 0.086 3.914 10 C 0.093 3.907 11 N -0.625 5.625 12 C 0.540 3.460 13 O -0.503 6.503 14 C -0.124 4.124 15 S -0.137 6.137 16 C -0.524 4.524 17 H 0.089 0.911 18 C 0.098 3.902 19 N -0.878 5.878 20 Si 0.855 3.145 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.235 1.235 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.220 0.780 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.166 -6.694 15.541 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.124 3.876 3 H 0.148 0.852 4 C -0.095 4.095 5 N -0.122 5.122 6 N -0.140 5.140 7 C -0.133 4.133 8 N -0.161 5.161 9 C -0.038 4.038 10 C -0.031 4.031 11 N -0.363 5.363 12 C 0.328 3.672 13 O -0.375 6.375 14 C -0.274 4.274 15 S 0.089 5.911 16 C -0.672 4.672 17 H 0.107 0.893 18 C -0.111 4.111 19 N -0.514 5.514 20 Si 0.680 3.320 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.159 1.159 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.237 0.763 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.255 -4.095 16.581 18.556 hybrid contribution 0.632 -1.918 -1.443 2.482 sum -6.623 -6.014 15.138 17.584 Atomic orbital electron populations 1.22062 0.92146 1.02776 1.04009 1.19608 0.94795 0.96335 0.76816 0.85230 1.24976 1.00720 0.86602 0.97215 1.74059 1.17889 1.21331 0.98931 1.74504 1.14044 0.99267 1.26202 1.26343 1.04043 1.02741 0.80148 1.46125 1.44524 1.16712 1.08725 1.22518 1.02726 0.96412 0.82171 1.22066 1.00549 0.80745 0.99787 1.48402 1.64542 1.06162 1.17205 1.20385 0.76004 0.88026 0.82779 1.90734 1.53382 1.13556 1.79818 1.23330 1.04060 1.03370 0.96653 1.84910 1.80864 1.11566 1.13725 1.22273 1.47918 0.94806 1.02196 0.89337 1.24696 0.93378 0.98554 0.94516 1.69927 1.39720 1.34861 1.06931 0.86756 0.81088 0.85256 0.78893 1.19146 1.19808 1.15893 0.92360 0.90129 0.90406 0.76329 0.87154 0.88317 0.89494 0.86181 0.88436 0.88102 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.43 37.16 0.35 -1.11 16 2 C 0.23 2.75 3.25 -68.39 -0.22 2.53 16 3 H 0.13 1.79 7.23 -51.93 -0.38 1.42 16 4 C 0.17 2.16 7.16 -155.30 -1.11 1.05 16 5 N -0.28 -4.18 12.21 32.79 0.40 -3.78 16 6 N -0.30 -4.15 12.23 29.60 0.36 -3.79 16 7 C 0.15 1.49 12.81 -90.34 -1.16 0.33 16 8 N -0.47 -4.55 3.11 -115.47 -0.36 -4.91 16 9 C 0.09 0.53 7.18 -4.02 -0.03 0.51 16 10 C 0.09 0.69 6.23 -3.55 -0.02 0.67 16 11 N -0.63 -7.36 2.63 -165.83 -0.44 -7.79 16 12 C 0.54 8.66 7.73 -10.98 -0.08 8.57 16 13 O -0.50 -10.05 15.40 5.56 0.09 -9.96 16 14 C -0.12 -2.11 4.51 36.01 0.16 -1.94 16 15 S -0.14 -3.26 18.55 -107.50 -1.99 -5.25 16 16 C -0.52 -14.27 10.04 30.94 0.31 -13.96 16 17 H 0.09 2.49 8.03 -52.49 -0.42 2.07 16 18 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 19 N -0.88 -25.52 13.97 55.49 0.78 -24.74 16 20 Si 0.86 20.99 27.74 -169.99 -4.71 16.28 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.23 -5.75 6.74 56.52 0.38 -5.37 16 24 H 0.06 0.50 7.54 -51.93 -0.39 0.11 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.22 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.52 7.53 -51.93 -0.39 0.13 16 31 H 0.12 0.79 5.95 -51.93 -0.31 0.48 16 32 H 0.10 1.49 7.90 -51.92 -0.41 1.08 16 33 H 0.10 1.54 7.76 -51.91 -0.40 1.14 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 301.52 15.07 4.54 4.54 Total: -1.00 -35.63 301.52 -7.21 -42.83 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -3.97 Total: -2.71 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.90 Total: -0.72 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.74 Total: -45.02 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.71 Total: 16.28 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -1.99 Total: -5.25 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.63 -7.21 -42.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277014180.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.432 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds